View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_high_43 (Length: 278)
Name: NF0755_high_43
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 19215363 - 19215620
Alignment:
| Q |
14 |
agagagaaacaggaacatagaagatgtttgaaggagaaagaaaagagagcaaggcattcaattctagg-----------------agtgagtgtgatcga |
96 |
Q |
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| T |
19215363 |
agagagaaagaggaacatagaagatgtttgaaggagaaagaaaatagagcaaggcattcaattctaggtaaccaaatattgtaggagtgagtgtgatcga |
19215462 |
T |
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| Q |
97 |
aactcagttggtaaatattgaacttgtgaaggtatagaggtactcaaacaaagactatggtgtgaaaagtgtaggaacttctacggttaaggacttaagg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||| |
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| T |
19215463 |
aactcagttggtaaatattgaacttgtgaaggtatagaggtactcaaacaaagactatggcgtgaaaagtgtaggaacttctattg--------ttaagg |
19215554 |
T |
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| Q |
197 |
taagggaaagggcgctccattgttctattt----tatgtatttactcgttgttaaaatgatgatgt |
258 |
Q |
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| T |
19215555 |
taagggaaagggcgctccatttttctattttatatatgtatttacttgttgttaaaatgatgatgt |
19215620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 29821674 - 29821741
Alignment:
| Q |
14 |
agagagaaacaggaacatagaagatgtttgaaggagaaagaaaagagagcaaggcattcaattctagg |
81 |
Q |
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| T |
29821674 |
agagagaaagagaaacatagaagatgtttgaaggagaaagaaaagagagcaaggcattcaattctagg |
29821741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 454167 - 454096
Alignment:
| Q |
191 |
ttaaggtaagggaaagggcgctccattgttctattt----tatgtatttactcgttgttaaaatgatgatgt |
258 |
Q |
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| T |
454167 |
ttaaggtacgggaaagggcgctccatttttttattttatatatgtagttacttgttgttaaaatgatgatgt |
454096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 7094211 - 7094173
Alignment:
| Q |
191 |
ttaaggtaagggaaagggcgctccattgttctattttat |
229 |
Q |
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| T |
7094211 |
ttaaggtaagggaaagggcgctccatttttttattttat |
7094173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 7097944 - 7097906
Alignment:
| Q |
191 |
ttaaggtaagggaaagggcgctccattgttctattttat |
229 |
Q |
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| T |
7097944 |
ttaaggtaagggaaagggcgctccatttttttattttat |
7097906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 29822683 - 29822720
Alignment:
| Q |
192 |
taaggtaagggaaagggcgctccattgttctattttat |
229 |
Q |
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| T |
29822683 |
taaggtaagggaaagggcgctccatttttttattttat |
29822720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 5187569 - 5187503
Alignment:
| Q |
193 |
aaggtaagggaaagggcgctccattgttctattttat----gtatttactcgttgttaaaatgatga |
255 |
Q |
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| T |
5187569 |
aaggtaagggaaaggtcgctccatttttttattttatatatgtatttacttgttgttaaaatgatga |
5187503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 8377590 - 8377628
Alignment:
| Q |
191 |
ttaaggtaagggaaagggcgctccattgttctattttat |
229 |
Q |
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||||||||||||||||||||||||||| || |||||||| |
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| T |
8377590 |
ttaaggtaagggaaagggcgctccatttttttattttat |
8377628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 41314024 - 41313953
Alignment:
| Q |
192 |
taaggtaagggaaagggcgctccattgtt-ctattttatgtat----ttactcgttgttaaaatgatgatgt |
258 |
Q |
| |
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|||||||||||||| ||||||||||| || ||||||||| ||| ||||| ||||||||||||||||||| |
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| T |
41314024 |
taaggtaagggaaatggcgctccattttttctattttatatatgtagttacttgttgttaaaatgatgatgt |
41313953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 37806590 - 37806553
Alignment:
| Q |
192 |
taaggtaagggaaagggcgctccattgttctattttat |
229 |
Q |
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|||||||||||||||||||||||||| || |||||||| |
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| T |
37806590 |
taaggtaagggaaagggcgctccatttttttattttat |
37806553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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