View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_high_61 (Length: 251)
Name: NF0755_high_61
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_high_61 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 24195170 - 24195397
Alignment:
| Q |
16 |
aggataagcatacatctcctggtaagtgattactatttcctaaaaaattaatcacgtgatcaattttatatgttaatgcaattgcaaataatttaattgc |
115 |
Q |
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| T |
24195170 |
aggataagcatacatctcctgataagtgattactatttcctaaaaaattaatcacatgatcaattttatatgttaatgaaa------ataatttaattgc |
24195263 |
T |
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| Q |
116 |
atttcagctgcttggtggaagaggtggggatcaaaaacaccaaatttaaagctacttgctattaaaatattgagtttgactgttagtgcatcggggtgtg |
215 |
Q |
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| T |
24195264 |
atttcagctgcttgctggaagaggtggggatcaaaaacaccaaatctaaagctacttgctattaaaatattgagtttgactgttagtgcatcggggtgtg |
24195363 |
T |
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| Q |
216 |
agaggaattggagtacttttgagcatgtatgtcc |
249 |
Q |
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| T |
24195364 |
agaggaattgtagtacttttgagcatgtatgtcc |
24195397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 80 - 251
Target Start/End: Complemental strand, 20010612 - 20010442
Alignment:
| Q |
80 |
tttatatgttaatgcaattgcaaataatttaattgcatttcagctgcttggtggaagaggtggggatcaaaaacaccaaatttaaagctacttgctatta |
179 |
Q |
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| T |
20010612 |
tttatatgttaatgcaattgcaaataatttaattgcatttcagctgcttggtggaaaaggtggggatcaaaa-caccaattctaaagctacttgctatta |
20010514 |
T |
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| Q |
180 |
aaatattgagtttgactgttagtgcatcggggtgtgagaggaattggagtacttttgagcatgtatgtcctt |
251 |
Q |
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| T |
20010513 |
aaatattgagtttgactgctagtgcatcggggtgtgagaggaattggagtacttttgagcatgtatgtcctt |
20010442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 3070983 - 3070756
Alignment:
| Q |
18 |
gataagcatacatctcctggtaagtgattactatttcctaaaaaattaatcacgtgatcaattttatatgttaatgcaattgcaaataatttaattgcat |
117 |
Q |
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| T |
3070983 |
gataagcgtacatctcctagtaagtgattgctatttcgtaaaaaattagtcacatgataaattttatatgttaatgcta------ataatttaattgcat |
3070890 |
T |
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| Q |
118 |
ttcagctgcttggtggaagaggtggggatcaaaaacaccaaatttaaagctacttgctattaaaatattgagtttgactgttagtgcatcggggtgtgag |
217 |
Q |
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| T |
3070889 |
ttcagctgaatggtggaagaggtggggatcgaaaacaccaaatttgcagctacttgctattaaaatattgagtttgacttgtagcgcatcggagtgtgag |
3070790 |
T |
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| Q |
218 |
aggaattggagtacttttgagcatgtatgtcctt |
251 |
Q |
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| T |
3070789 |
aggaattggagtacttttgagcatgtacgtcctt |
3070756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 9445503 - 9445267
Alignment:
| Q |
12 |
agagaggataagcatacatctcctggtaagtgattactatttcct-aaaaaattaatcacgtgatcaattttatatgttaatgcaattgcaaataattta |
110 |
Q |
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| T |
9445503 |
agagaggataagcatacatctcctggtaggtgattggtatttcgttaaaaaattagtcacattatatattttatatgttaatgcga------atactcta |
9445410 |
T |
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| Q |
111 |
attgcatttcagctgcttggtggaagaggtgggg-atcaaaaacaccaaatt-taaagctacttgctattaaaatattgagtttgactgttagtgcatcg |
208 |
Q |
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| T |
9445409 |
attgcatttcagctgagtggtggaagaggtgggggatcaaaaacaccaaaatctgcaactacttactattaaaatattgagtttgacttgtagcgcatcg |
9445310 |
T |
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| Q |
209 |
gggtgtgagaggaattggagtacttttgagcatgtatgtcctt |
251 |
Q |
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| T |
9445309 |
gggcttgagaggaattggtgtactgttgagcatgtatgtcctt |
9445267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 2947729 - 2947962
Alignment:
| Q |
11 |
cagagaggataagcatacatctcctggtaagtgattactatttcctaaaaaa-ttaatcacgtgatcaattttatatgttaatgcaattgcaaataattt |
109 |
Q |
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| T |
2947729 |
cagagaggataagcatacatctcttggtaagttattgctatttcgtaaaaaaattagtcacgtgataaattttatatgttaatgcaa------atacttt |
2947822 |
T |
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| Q |
110 |
aattgcatttcagctgcttggtggaagaggtggggatcaaaaacaccaaatttaaagctacttgctattaaaatattgagtttgactgttagtgcatcgg |
209 |
Q |
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| T |
2947823 |
aattgcatttcagctgagtggtggaagaggtatggatcaaaaacatcaaatttgcagctacttgctattaaaatattgagtttgacttgtagctcatcgg |
2947922 |
T |
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| Q |
210 |
ggtgtgagaggaattggagtacttttgagcatgtatgtcc |
249 |
Q |
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| T |
2947923 |
ggcgtgagaggaattggagtacttttgagcatgtacgtcc |
2947962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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