View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0755_low_1 (Length: 603)

Name: NF0755_low_1
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0755_low_1
NF0755_low_1
[»] chr2 (7 HSPs)
chr2 (75-420)||(29637163-29637508)
chr2 (442-598)||(29637500-29637656)
chr2 (302-359)||(24786520-24786577)
chr2 (104-244)||(23653024-23653163)
chr2 (289-348)||(18987136-18987195)
chr2 (542-594)||(32251728-32251779)
chr2 (413-469)||(44586043-44586099)
[»] chr4 (8 HSPs)
chr4 (311-599)||(30275511-30275793)
chr4 (183-285)||(12137502-12137602)
chr4 (212-359)||(11098090-11098238)
chr4 (307-362)||(15890136-15890192)
chr4 (134-213)||(11557255-11557334)
chr4 (134-244)||(18219474-18219583)
chr4 (536-585)||(18556394-18556442)
chr4 (307-362)||(15872544-15872600)
[»] chr3 (6 HSPs)
chr3 (382-578)||(19908101-19908294)
chr3 (92-266)||(14480294-14480466)
chr3 (304-360)||(5943655-5943711)
chr3 (159-214)||(14053794-14053849)
chr3 (536-594)||(14481090-14481147)
chr3 (307-362)||(16359275-16359331)
[»] chr7 (9 HSPs)
chr7 (104-270)||(22613742-22613906)
chr7 (176-244)||(4530437-4530504)
chr7 (240-360)||(13477356-13477476)
chr7 (103-270)||(11656413-11656578)
chr7 (104-257)||(13476315-13476467)
chr7 (159-244)||(16061825-16061909)
chr7 (105-214)||(15866018-15866129)
chr7 (302-350)||(20026347-20026395)
chr7 (159-211)||(48378002-48378054)
[»] scaffold1001 (1 HSPs)
scaffold1001 (134-228)||(2355-2449)
[»] chr8 (1 HSPs)
chr8 (176-228)||(29295211-29295263)
[»] chr5 (3 HSPs)
chr5 (123-205)||(14137094-14137177)
chr5 (413-466)||(13937401-13937454)
chr5 (104-205)||(24830748-24830849)
[»] chr1 (1 HSPs)
chr1 (85-214)||(10388885-10389015)
[»] chr6 (4 HSPs)
chr6 (216-360)||(14970352-14970497)
chr6 (285-360)||(8403493-8403569)
chr6 (104-257)||(7681283-7681434)
chr6 (536-585)||(19546818-19546866)
[»] scaffold0063 (1 HSPs)
scaffold0063 (159-211)||(27012-27064)
[»] scaffold0061 (2 HSPs)
scaffold0061 (159-211)||(17607-17659)
scaffold0061 (159-211)||(26665-26717)
[»] scaffold1269 (1 HSPs)
scaffold1269 (104-214)||(1238-1349)
[»] scaffold0003 (2 HSPs)
scaffold0003 (298-393)||(131141-131236)
scaffold0003 (159-211)||(131824-131876)


Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 75 - 420
Target Start/End: Original strand, 29637163 - 29637508
Alignment:
Q  75 tatacaatgataacttatcatcatcaactaacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactc 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29637163 tatacaatgataacttatcatcatcaactaacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactc 29637262  T
Q  175 atcatttgttctctccattactacatctttcatcctaatatcataccctattcttcattcataatttaagatgtttacttctccattaacattccttaga 274  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  29637263 atcattagttctctccattactacatctttcatcctaatatcataccctattcttcattcataattttagatgtttacttctccattaacatttcttaga 29637362  T
Q  275 acgtcttccatctatacaaccatgttttacctcaccatcgtcattacctctttcatagttattcttctcattaaaacaactttataatatatcacttcat 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |||||||    
T  29637363 acgtcttccatctatacaaccatgttttacctcaccatcgtcattacctctttcataattatttttctcattaaaacaactttatattatattacttcat 29637462  T
Q  375 ctcacgttcatcgtcatttgtaacatcgaccatttcaataatctca 420  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  29637463 ctcacgttcatcgtcatttgtaacatcaaccatttcaataatctca 29637508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 442 - 598
Target Start/End: Original strand, 29637500 - 29637656
Alignment:
Q  442 ataatctcacattatcattactttcaacgtcagaaattttctccactaaaatttcattacactttagggttctaatatctcattaccggtcattattatt 541  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29637500 ataatctcacattatcattactttcaacgtcagaaactttctccactaaaatttcattacactttagggttctaatatctcattaccggtcattactatt 29637599  T
Q  542 attatcgtcaatcattataaactattatctcttatctactttctcattcatctcact 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29637600 attatcgtcaatcattataaactattatctcttatctactttctcattcatctcact 29637656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 359
Target Start/End: Original strand, 24786520 - 24786577
Alignment:
Q  302 tacctcaccatcgtcattacctctttcatagttattcttctcattaaaacaactttat 359  Q
    ||||||||||||||||||| ||| |||||| |||||||||||| ||||||||||||||    
T  24786520 tacctcaccatcgtcattaactccttcatacttattcttctcaataaaacaactttat 24786577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 23653163 - 23653024
Alignment:
Q  104 aacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatctt 203  Q
    ||||||||| | || ||||| |||| ||  |||| ||| |||| ||| |||||||||| ||||| || ||| ||||| ||||||||||| ||||||||||    
T  23653163 aacatcttacacgagcatatgtacacatcacattactttgttattcattactacatttggaatctactctcgtcattcgttctctccatcactacatctt 23653064  T
Q  204 tcatcctaatatcataccctattcttcattcataatttaag 244  Q
    |||| || |||  |||||| ||||  ||||| |||||||||    
T  23653063 tcattctgatagtataccccattccccattc-taatttaag 23653024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 348
Target Start/End: Complemental strand, 18987195 - 18987136
Alignment:
Q  289 tacaaccatgttttacctcaccatcgtcattacctctttcatagttattcttctcattaa 348  Q
    |||||| | ||| |||||||||||| |||||| ||| |||||| ||||||||||||||||    
T  18987195 tacaactaggttctacctcaccatcatcattaactccttcatacttattcttctcattaa 18987136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 542 - 594
Target Start/End: Complemental strand, 32251779 - 32251728
Alignment:
Q  542 attatcgtcaatcattataaactattatctcttatctactttctcattcatct 594  Q
    ||||||||||| |||||||| |||| ||||||||||  |||||||||||||||    
T  32251779 attatcgtcaaacattataa-ctataatctcttatcctctttctcattcatct 32251728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 469
Target Start/End: Complemental strand, 44586099 - 44586043
Alignment:
Q  413 taatctcaaattcattttaatttaaagttataatctcacattatcattactttcaac 469  Q
    |||||| || |||||| |||||||||||||| ||||||| | ||||||| |||||||    
T  44586099 taatcttaacttcattctaatttaaagttattatctcacctcatcattaatttcaac 44586043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 311 - 599
Target Start/End: Complemental strand, 30275793 - 30275511
Alignment:
Q  311 atcgtcattacctctttcatagttattcttctcattaaaacaactttataatatatcacttcatctcacgttcatcgtcatttgtaacatcgaccatttc 410  Q
    |||||||||| |||||||||| |||||  |||||||||||||||||||||   ||  ||||| |||||||||||||||||| | ||||| |||||||| |    
T  30275793 atcgtcattatctctttcataattatt--tctcattaaaacaactttatatcgtagtacttcgtctcacgttcatcgtcatctataacaccgaccattcc 30275696  T
Q  411 aataatctcaaattcattttaatttaaagttataatctcacattatcattactttcaacgtcagaaattttctccactaaaatttcattacactttaggg 510  Q
     ||||||| || |||||| |||||||||||||| || |||| |||||||||||||| ||||||  || |||| ||||||||| ||||||| | |||||||    
T  30275695 tataatcttaacttcattctaatttaaagttattatttcaccttatcattactttcgacgtcatcaactttc-ccactaaaacttcattatattttaggg 30275597  T
Q  511 ttctaatatctcattaccggtcattattattattatcgtcaatcattataaactattatctcttatctactttctcattcatctcactc 599  Q
    || ||||||||| ||||| |||    |||||||||||||||| ||||||| ||||||||||||||||| |||| | |||||||| ||||    
T  30275596 ttttaatatctcgttaccagtc---gttattattatcgtcaaacattatatactattatctcttatcttcttttttattcatcttactc 30275511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 183 - 285
Target Start/End: Original strand, 12137502 - 12137602
Alignment:
Q  183 ttctctccattactacatctttcatcctaatatcataccctattcttcattcataatttaagatgtttacttctccattaacattccttagaacgtcttc 282  Q
    |||||||||||||||||||||||||||| |||  ||||||| |||| ||||| |||| ||| |||||||| |||  ||||| |||||||| |||||||||    
T  12137502 ttctctccattactacatctttcatcctgatagtataccctcttctccattc-taatataa-atgtttacctctttattaatattccttataacgtcttc 12137599  T
Q  283 cat 285  Q
    |||    
T  12137600 cat 12137602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 359
Target Start/End: Complemental strand, 11098238 - 11098090
Alignment:
Q  212 atatcataccctattcttcattcataat-ttaagatgtttacttctccattaacattccttagaacgtcttccatctatacaaccatgttttacctcacc 310  Q
    |||||||||| ||||| |||||| || | ||||||| ||||||| | ||||| |||| | || || |||| |  ||| |||||| | ||  || ||||||    
T  11098238 atatcataccttattcctcattcttagtcttaagatatttacttgttcattatcatttcatataatgtctcctctctttacaactaggtcctaactcacc 11098139  T
Q  311 atcgtcattacctctttcatagttattcttctcattaaaacaactttat 359  Q
    ||||||||||  || |||||| |||||||||||| |||||| |||||||    
T  11098138 atcgtcattaattccttcatacttattcttctcaataaaacgactttat 11098090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 362
Target Start/End: Complemental strand, 15890192 - 15890136
Alignment:
Q  307 caccatcgtcattacctctttcatagttattcttctca-ttaaaacaactttataat 362  Q
    |||||||||||||| ||||||| || |||||||||||| ||||||| ||||||||||    
T  15890192 caccatcgtcattaactctttcgtaattattcttctcatttaaaacgactttataat 15890136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 11557255 - 11557334
Alignment:
Q  134 cattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatctttcatcctaat 213  Q
    ||||| || |||| ||| ||||||||||  |||| || ||| ||||| ||||||||||| |||||||||||||| |||||    
T  11557255 cattcttttgttattcattactacattttaaatctactctcgtcattcgttctctccatcactacatctttcattctaat 11557334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 18219583 - 18219474
Alignment:
Q  134 cattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatctttcatcctaatatcataccctattcttcatt 233  Q
    |||||||| |||| ||| |||||||||| ||||  |  ||| ||||| ||||||||||| ||||||| ||||||  |||||  |||||| ||||| ||||    
T  18219583 cattcctttgttattcattactacatttggaatatattctcgtcattcgttctctccatcactacatttttcattttaatagtataccccattctccatt 18219484  T
Q  234 cataatttaag 244  Q
    | |||||||||    
T  18219483 c-taatttaag 18219474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 585
Target Start/End: Complemental strand, 18556442 - 18556394
Alignment:
Q  536 attattattatcgtcaatcattataaactattatctcttatctactttct 585  Q
    ||||||||||||||||| |||||| |||||||| ||||||||| ||||||    
T  18556442 attattattatcgtcaaacattat-aactattacctcttatctgctttct 18556394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 362
Target Start/End: Complemental strand, 15872600 - 15872544
Alignment:
Q  307 caccatcgtcattacctctttcatagttattcttctca-ttaaaacaactttataat 362  Q
    |||||||||||||| ||||||| || |||||||||||| |||| || ||||||||||    
T  15872600 caccatcgtcattaactctttcgtaattattcttctcatttaatacgactttataat 15872544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 382 - 578
Target Start/End: Complemental strand, 19908294 - 19908101
Alignment:
Q  382 tcatcgtcatttgtaacatcgaccatttcaataatctcaaattcattttaatttaaagttataatctcacattatcattactttcaacgtcagaaatttt 481  Q
    |||| ||||||| ||| |||||||||||| | ||||| || ||  || |||||||||||||| ||||||| ||||| |||||||| | ||||| || |||    
T  19908294 tcattgtcatttataatatcgaccatttccaaaatcttaacttatttctaatttaaagttattatctcaccttatcgttactttcgatgtcagcaacttt 19908195  T
Q  482 ctccactaaaatttcattacactttagggttctaatatctcattaccggtcattattattattatcgtcaatcattataaactattatctcttatct 578  Q
    | ||| ||||| ||||||||| |||||||||||||| ||||||||||  ||   |||||| ||||| ||||||||||||||| ||||| | ||||||    
T  19908194 ccccaataaaacttcattacattttagggttctaatctctcattaccattc---attattgttatcatcaatcattataaaccattatttgttatct 19908101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 266
Target Start/End: Complemental strand, 14480466 - 14480294
Alignment:
Q  92 tcatcatcaactaacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactcatcatttgttctctcca 191  Q
    ||||||| || |||||||||| ||||  |||| || | ||  |||||||| |||| ||| ||||||||||  |||  || ||| ||||| ||||||||||    
T  14480466 tcatcattaaataacatcttacatgagaatatgtatacatcacattcctttgttattcattactacatttgtaatatactctcgtcattcgttctctcca 14480367  T
Q  192 ttactacatctttcatcctaatatcataccctattcttcattcataatttaagatgtttacttctccattaacat 266  Q
    ||||||| ||||||    |||||  |||||||||||| || || ||||||||| ||||||| |||| ||||||||    
T  14480366 ttactacttctttccatttaatagtataccctattctccactc-taatttaag-tgtttacctctctattaacat 14480294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 360
Target Start/End: Complemental strand, 5943711 - 5943655
Alignment:
Q  304 cctcaccatcgtcattacctctttcatagttattcttctcattaaaacaactttata 360  Q
    ||||||||| ||||||| |||||||| | ||||||||||||||||| | ||||||||    
T  5943711 cctcaccattgtcattaactctttcaaacttattcttctcattaaagcgactttata 5943655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 14053849 - 14053794
Alignment:
Q  159 tttagaatccacactcatcatttgttctctccattactacatctttcatcctaata 214  Q
    ||||||||| || ||| |||||  |||||||||||||||| |||||||||||||||    
T  14053849 tttagaatctactctcgtcattcattctctccattactacgtctttcatcctaata 14053794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 536 - 594
Target Start/End: Complemental strand, 14481147 - 14481090
Alignment:
Q  536 attattattatcgtcaatcattataaactattatctcttatctactttctcattcatct 594  Q
    ||||||||||||||||| |||||| |||||||| ||||||||  ||||| |||||||||    
T  14481147 attattattatcgtcaaccattat-aactattacctcttatcctctttcccattcatct 14481090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 362
Target Start/End: Complemental strand, 16359331 - 16359275
Alignment:
Q  307 caccatcgtcattacctctttcatagttattcttctca-ttaaaacaactttataat 362  Q
    |||||||||||||| ||||||| || |||||||||||| |||| || ||||||||||    
T  16359331 caccatcgtcattaactctttcgtaattattcttctcatttaatacgactttataat 16359275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 104 - 270
Target Start/End: Complemental strand, 22613906 - 22613742
Alignment:
Q  104 aacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatctt 203  Q
    ||||||||| | |||||||| |||| ||  |||||||| |||| ||| ||||| |||| ||||| || ||||||||| ||||||||||||||||| ||||    
T  22613906 aacatcttacacgaacatatgtacacatcacattcctttgttattcattactaaatttggaatctactctcatcattcgttctctccattactacctctt 22613807  T
Q  204 tcatcctaatatcataccctattcttcattcataatttaagatgtttacttctccattaacattcct 270  Q
    |||| ||||||  |||||||||||| ||||| ||||||||| ||||||| |||| | ||| ||||||    
T  22613806 tcattctaataatataccctattctccattc-taatttaag-tgtttacctctctactaatattcct 22613742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 4530504 - 4530437
Alignment:
Q  176 tcatttgttctctccattactacatctttcatcctaatatcataccctattcttcattcataatttaag 244  Q
    ||||| |||||||||||||||||||||||||||||||||  ||||| |||||| ||||| |||||||||    
T  4530504 tcattcgttctctccattactacatctttcatcctaatagtataccatattctccattc-taatttaag 4530437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 360
Target Start/End: Complemental strand, 13477476 - 13477356
Alignment:
Q  240 ttaagatgtttacttctccattaacattccttagaacgtcttccatctatacaaccatgttttacctcaccatcgtcattacctctttcatagttattct 339  Q
    ||||||| ||||||||| ||||| |||| | || || |||| |  ||| |||||| | ||  ||||||||||||||||||| ||| |||||| |||||||    
T  13477476 ttaagatatttacttcttcattaccattacatataatgtctcctctctttacaactaggtcctacctcaccatcgtcattaactccttcatacttattct 13477377  T
Q  340 tctcattaaaacaactttata 360  Q
    ||||| |||||  ||||||||    
T  13477376 tctcaataaaatgactttata 13477356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 103 - 270
Target Start/End: Original strand, 11656413 - 11656578
Alignment:
Q  103 taacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatct 202  Q
    |||||||||| | |||||||| |||| ||  |||||||| |||| ||| | ||| |||| ||||| |  ||| |||||  || ||||||||||||| |||    
T  11656413 taacatcttacacgaacatatgtacacatcacattcctttgttattcattgctaaatttggaatctattctcgtcattcattttctccattactacctct 11656512  T
Q  203 ttcatcctaatatcataccctattcttcattcataatttaagatgtttacttctccattaacattcct 270  Q
    ||||| |||| |  |||||||||||| ||||| ||||||||| ||||||| |||| | ||| ||||||    
T  11656513 ttcattctaacagtataccctattctccattc-taatttaag-tgtttacctctctactaatattcct 11656578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 13476467 - 13476315
Alignment:
Q  104 aacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttag-aatccacactcatcatttgttctctccattactacatct 202  Q
    ||||||||| | || ||||| |||| ||  |||||||| |||| ||| |||||||||| | |||| || ||| || || |||||||||||||||||| ||    
T  13476467 aacatcttacacgagcatatgtacacatcacattcctttgttattcattactacattttggaatctactctcgtctttcgttctctccattactacacct 13476368  T
Q  203 ttcatcctaatatcataccctattcttcattcataatttaagatgtttacttctc 257  Q
    ||||| ||||||  |||||| || ||| |||| ||||||||| ||||||| ||||    
T  13476367 ttcattctaatagtataccccatcctttattc-taatttaag-tgtttacctctc 13476315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 16061825 - 16061909
Alignment:
Q  159 tttagaatccacactcatcatttgttctctccattactacatctttcatcctaatatcataccctattcttcattcataatttaag 244  Q
    ||||||||| || |||| |||| ||||||||||||||||| |||||||||||| ||  ||||||| || | ||||| |||||||||    
T  16061825 tttagaatctactctcagcattcgttctctccattactacgtctttcatcctagtagtataccctgttatccattc-taatttaag 16061909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 15866129 - 15866018
Alignment:
Q  105 acatcttatatgaacatatatacatatttcattccttagttaatcaatactaca--tttagaatccacactcatcatttgttctctccattactacatct 202  Q
    |||||||||| || ||||| |||| ||   ||||||| |||| ||| |||| ||  |||||||||  | ||| |||||||||||||||||||| || |||    
T  15866129 acatcttatacgagcatatgtacacatcatattccttcgttagtcattactgcaattttagaatcttctctcgtcatttgttctctccattaccacgtct 15866030  T
Q  203 ttcatcctaata 214  Q
    ||||| ||||||    
T  15866029 ttcattctaata 15866018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 350
Target Start/End: Original strand, 20026347 - 20026395
Alignment:
Q  302 tacctcaccatcgtcattacctctttcatagttattcttctcattaaaa 350  Q
    ||||||||||||||||||| ||| |||||| | |||||||||| |||||    
T  20026347 tacctcaccatcgtcattaactccttcatactgattcttctcaataaaa 20026395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 48378002 - 48378054
Alignment:
Q  159 tttagaatccacactcatcatttgttctctccattactacatctttcatccta 211  Q
    ||||||||| || ||| ||||| ||||||||||||||||| ||||||| ||||    
T  48378002 tttagaatctactctcgtcattcgttctctccattactacgtctttcacccta 48378054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 2355 - 2449
Alignment:
Q  134 cattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatctttcatcctaatatcataccctattct 228  Q
    |||||||| |||| ||| ||||| |||||||||| || ||| |||||  |||||||||||||||| |||||||| ||||||  ||||||||||||    
T  2355 cattcctttgttattcattactaaatttagaatctactctcgtcattcattctctccattactacctctttcattctaatagtataccctattct 2449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 29295211 - 29295263
Alignment:
Q  176 tcatttgttctctccattactacatctttcatcctaatatcataccctattct 228  Q
    ||||| |||||||||||||||||||||||||||||||||  |||||| |||||    
T  29295211 tcattcgttctctccattactacatctttcatcctaatagtataccccattct 29295263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 14137094 - 14137177
Alignment:
Q  123 tatacatatttcattccttagttaatcaatactacattt-agaatccacactcatcatttgttctctccattactacatctttc 205  Q
    |||||||||| ||||||||  |||||||||| | ||||| | |||| || ||| ||||||||||||| ||||||||||||||||    
T  14137094 tatacatattccattccttcattaatcaatattgcattttaaaatctactctcgtcatttgttctcttcattactacatctttc 14137177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 413 - 466
Target Start/End: Original strand, 13937401 - 13937454
Alignment:
Q  413 taatctcaaattcattttaatttaaagttataatctcacattatcattactttc 466  Q
    |||||| || |||||| |||||||||||||| ||||||| ||||||||||||||    
T  13937401 taatcttaacttcattctaatttaaagttattatctcaccttatcattactttc 13937454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 24830849 - 24830748
Alignment:
Q  104 aacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatctt 203  Q
    ||||||||| |||| ||||| || | ||  |||||||| |||| ||| ||||||||||  ||||||| ||| ||| | ||||||||||||||||| ||||    
T  24830849 aacatcttacatgagcatatgtatacatcacattcctttgttattcattactacatttgtaatccactctcgtcaatcgttctctccattactacttctt 24830750  T
Q  204 tc 205  Q
    ||    
T  24830749 tc 24830748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 10388885 - 10389015
Alignment:
Q  85 taacttatcatcatcaactaacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttag-aatccacactcatcatttgt 183  Q
    |||||| ||||||| || |||||||||||  || ||||| |||| ||  |||||||| |||| ||| |||| ||||| | |||| ||  || ||||| ||    
T  10388885 taacttctcatcattaattaacatcttatgcgagcatatttacacatcacattccttcgttattcattactgcattttggaatctaccatcgtcattcgt 10388984  T
Q  184 tctctccattactacatctttcatcctaata 214  Q
    ||| |||||| ||||||||||||||||||||    
T  10388985 tctttccatttctacatctttcatcctaata 10389015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 216 - 360
Target Start/End: Original strand, 14970352 - 14970497
Alignment:
Q  216 cataccctattcttcattcataat-ttaagatgtttacttctccattaacattccttagaacgtcttccatctatacaaccatgttttacctcaccatcg 314  Q
    |||||||||||| | |||| || | ||||||| ||||||| | ||||| |||| | || |||||||||  ||| |||||| |  |  ||| |||||||||    
T  14970352 cataccctattcctaattcttagtcttaagatatttacttgttcattatcattacatataacgtcttctctctttacaactagatactacttcaccatcg 14970451  T
Q  315 tcattacctctttcatagttattcttctcattaaaacaactttata 360  Q
    |||||| ||| |||||| |||||||||||| |||||| ||| ||||    
T  14970452 tcattaactccttcatacttattcttctcaataaaaccactgtata 14970497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 360
Target Start/End: Complemental strand, 8403569 - 8403493
Alignment:
Q  285 tctatacaaccatgttttacctcaccatcgtcattacctctttcatagttattcttctca-ttaaaacaactttata 360  Q
    |||||||||| | ||| | || |||||||||||||| ||||||| || |||||||||||| ||||||| ||||||||    
T  8403569 tctatacaactaggttcttccccaccatcgtcattaactctttcgtaattattcttctcatttaaaactactttata 8403493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 7681434 - 7681283
Alignment:
Q  104 aacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatctt 203  Q
    ||||||||| |||| ||||| || | ||| |||||||| |||| ||| ||||||||||  |||| || ||  ||| |  |||||||||||||||| ||||    
T  7681434 aacatcttacatgagcatatgtatacattacattcctttgttattcattactacatttgtaatctactcttgtcaatcattctctccattactacttctt 7681335  T
Q  204 tcatcctaatatcataccctattcttcattcataatttaagatgtttacttctc 257  Q
    ||   ||||||  ||||||||| || ||||| ||||||||| ||||||| ||||    
T  7681334 tccatctaatagtataccctatcctccattc-taatttaag-tgtttacctctc 7681283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 585
Target Start/End: Complemental strand, 19546866 - 19546818
Alignment:
Q  536 attattattatcgtcaatcattataaactattatctcttatctactttct 585  Q
    ||||||||||||||||| |||||| |||||||| ||||||||| ||||||    
T  19546866 attattattatcgtcaaacattat-aactattacctcttatctgctttct 19546818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 27064 - 27012
Alignment:
Q  159 tttagaatccacactcatcatttgttctctccattactacatctttcatccta 211  Q
    ||||||||| || ||| ||||| ||||||||||||||||| ||||||||||||    
T  27064 tttagaatctactctcgtcattcgttctctccattactacgtctttcatccta 27012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 17659 - 17607
Alignment:
Q  159 tttagaatccacactcatcatttgttctctccattactacatctttcatccta 211  Q
    ||||||||| || ||| ||||| ||||||||||||||||| ||||||||||||    
T  17659 tttagaatctactctcgtcattcgttctctccattactacgtctttcatccta 17607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 26717 - 26665
Alignment:
Q  159 tttagaatccacactcatcatttgttctctccattactacatctttcatccta 211  Q
    ||||||||| || ||| ||||| ||||||||||||||||| ||||||||||||    
T  26717 tttagaatctactctcgtcattcgttctctccattactacgtctttcatccta 26665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 1238 - 1349
Alignment:
Q  104 aacatcttatatgaacatatatacatatttcattccttagttaatcaatactacattt-agaatccacactcatcatttgttctctccattactacatct 202  Q
    ||||||||||| || ||||| |||| ||   ||||||| |||| ||| |||| ||||| |||||| || ||| ||||| |||||||  |||||||| |||    
T  1238 aacatcttatacgagcatatgtacacatcatattccttcgttactcattactgcattttagaatctactctcgtcattcgttctctttattactacgtct 1337  T
Q  203 ttcatcctaata 214  Q
    ||||||||||||    
T  1338 ttcatcctaata 1349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 393
Target Start/End: Original strand, 131141 - 131236
Alignment:
Q  298 gttttacctcaccatcgtcattacctctttcatagttattcttctcattaaaacaactttataatatatcacttcatctcacgttcatcgtcattt 393  Q
    ||||| |||||| || || |||| ||||||| || |||||||||||| |||||| ||||||||   ||| ||||  |||||||||| |||||||||    
T  131141 gtttttcctcacaattgttattaactctttcctacttattcttctcaataaaacgactttatatcttattacttgttctcacgttcgtcgtcattt 131236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 131824 - 131876
Alignment:
Q  159 tttagaatccacactcatcatttgttctctccattactacatctttcatccta 211  Q
    ||||||||| ||  || ||||| ||||||||||||||||| ||||||||||||    
T  131824 tttagaatctactatcgtcattcgttctctccattactacgtctttcatccta 131876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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