View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0755_low_105 (Length: 280)

Name: NF0755_low_105
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0755_low_105
NF0755_low_105
[»] chr5 (5 HSPs)
chr5 (47-117)||(21388436-21388506)
chr5 (47-117)||(18694482-18694552)
chr5 (43-77)||(12830262-12830296)
chr5 (43-77)||(12862242-12862276)
chr5 (43-77)||(22818841-22818875)
[»] chr1 (2 HSPs)
chr1 (80-150)||(45570919-45570992)
chr1 (47-117)||(50679113-50679183)
[»] chr2 (1 HSPs)
chr2 (43-107)||(3527533-3527598)
[»] chr7 (3 HSPs)
chr7 (47-114)||(27071467-27071535)
chr7 (47-114)||(27206778-27206846)
chr7 (47-114)||(26006336-26006404)
[»] chr3 (1 HSPs)
chr3 (47-114)||(24376031-24376099)
[»] chr4 (1 HSPs)
chr4 (43-77)||(44159757-44159791)


Alignment Details
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 21388506 - 21388436
Alignment:
Q  47 ttgttgttggaattctgagaatttaaatggaattagagaaagaagaatttcactgttgttgaagatgagtt 117  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  21388506 ttgttgttggaattttgagaatttaaatggaattagagaaaggagaatttcactgttgttgataatgagtt 21388436  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 18694552 - 18694482
Alignment:
Q  47 ttgttgttggaattctgagaatttaaatggaattagagaaagaagaatttcactgttgttgaagatgagtt 117  Q
    ||||||||||||||  |||||||||||||||||||||||||  ||||||||  |||||||||  |||||||    
T  18694552 ttgttgttggaatttggagaatttaaatggaattagagaaatgagaatttcgatgttgttgataatgagtt 18694482  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 12830262 - 12830296
Alignment:
Q  43 gaaattgttgttggaattctgagaatttaaatgga 77  Q
    |||||||||||||||||| ||||||||||||||||    
T  12830262 gaaattgttgttggaattttgagaatttaaatgga 12830296  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 12862242 - 12862276
Alignment:
Q  43 gaaattgttgttggaattctgagaatttaaatgga 77  Q
    |||||||||||||||||| ||||||||||||||||    
T  12862242 gaaattgttgttggaattttgagaatttaaatgga 12862276  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 22818841 - 22818875
Alignment:
Q  43 gaaattgttgttggaattctgagaatttaaatgga 77  Q
    |||||||||||||||||| ||||||||||||||||    
T  22818841 gaaattgttgttggaattttgagaatttaaatgga 22818875  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 45570992 - 45570919
Alignment:
Q  80 tagagaaagaagaatttcactgttgttgaagatgag---ttatatagtggtgatggattttgaattttaaatgg 150  Q
    |||||||| |||||||||||||||||||||||||||   ||||||| |||||||||||||||||||| ||||||    
T  45570992 tagagaaaaaagaatttcactgttgttgaagatgagttattatataatggtgatggattttgaatttcaaatgg 45570919  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 50679183 - 50679113
Alignment:
Q  47 ttgttgttggaattctgagaatttaaatggaattagagaaagaagaatttcactgttgttgaagatgagtt 117  Q
    ||||||||| |||| |||||||||| |||||||||||||||  ||||||||| |||||||||  |||||||    
T  50679183 ttgttgttgaaattttgagaatttatatggaattagagaaatgagaatttcattgttgttgataatgagtt 50679113  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 3527598 - 3527533
Alignment:
Q  43 gaaattgttgttggaatt-ctgagaatttaaatggaattagagaaagaagaatttcactgttgttg 107  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||  ||||||||| ||||||||    
T  3527598 gaaattgttgttggaatttctgagaatttaagtggaattaaagaaatgagaatttcattgttgttg 3527533  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 27071535 - 27071467
Alignment:
Q  47 ttgttgttggaattctgagaa-tttaaatggaattagagaaagaagaatttcactgttgttgaagatga 114  Q
    ||||||||||||||||||||| ||||||| |||||||| |||   || ||||| |||||||||||||||    
T  27071535 ttgttgttggaattctgagaattttaaatagaattagaaaaatgggagtttcagtgttgttgaagatga 27071467  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 27206778 - 27206846
Alignment:
Q  47 ttgttgttggaattctgagaa-tttaaatggaattagagaaagaagaatttcactgttgttgaagatga 114  Q
    ||||||||||||||||||||| ||||||| |||||||| |||   || ||||| |||||||||||||||    
T  27206778 ttgttgttggaattctgagaattttaaatagaattagaaaaatgggagtttcagtgttgttgaagatga 27206846  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 26006336 - 26006404
Alignment:
Q  47 ttgttgttggaattctgagaa-tttaaatggaattagagaaagaagaatttcactgttgttgaagatga 114  Q
    ||||||||||||||||||||| ||||||| |||||||| |||   || ||||| ||||||||| |||||    
T  26006336 ttgttgttggaattctgagaattttaaatagaattagaaaaatgggagtttcagtgttgttgatgatga 26006404  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 24376031 - 24376099
Alignment:
Q  47 ttgttgttggaattctgagaa-tttaaatggaattagagaaagaagaatttcactgttgttgaagatga 114  Q
    ||||||||||||||||||||| ||||||| |||||||| |||   || ||||| |||||||||||||||    
T  24376031 ttgttgttggaattctgagaattttaaatagaattagaaaaatgggagtttcagtgttgttgaagatga 24376099  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 44159791 - 44159757
Alignment:
Q  43 gaaattgttgttggaattctgagaatttaaatgga 77  Q
    |||||||||||||||||| ||||||||||||||||    
T  44159791 gaaattgttgttggaattttgagaatttaaatgga 44159757  T

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