View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_112 (Length: 274)
Name: NF0755_low_112
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_112 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 23134875 - 23135127
Alignment:
| Q |
1 |
tggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctt |
100 |
Q |
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| T |
23134875 |
tggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctt |
23134974 |
T |
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| Q |
101 |
taggcacttgaaggatgcatctttggacagtaatggggcatgactggttatttggaaggggtaggccagnnnnnnnnnctagttgttagatgattaaggg |
200 |
Q |
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| T |
23134975 |
tgggcacttgaaggatgcatcttcggacagtaatggggcgtgactggttatttggaaggggtaggccag-ttttgtttctagttgttagatgattaaggg |
23135073 |
T |
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| Q |
201 |
cattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
254 |
Q |
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| T |
23135074 |
cattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
23135127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 11895005 - 11894753
Alignment:
| Q |
1 |
tggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctt |
100 |
Q |
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| T |
11895005 |
tggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctt |
11894906 |
T |
|
| Q |
101 |
taggcacttgaaggatgcatctttggacagtaatggggcatgactggttatttggaaggggtaggccagnnnnnnnnnctagttgttagatgattaaggg |
200 |
Q |
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| T |
11894905 |
tgggcacttgaaggatgcatcttcggacagtaatggggcgtgactggttatttggaaggggtaggccag-ttttgtttctagttgttagatgattaaggg |
11894807 |
T |
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| Q |
201 |
cattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
254 |
Q |
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| T |
11894806 |
cattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
11894753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 20282706 - 20282454
Alignment:
| Q |
1 |
tggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctt |
100 |
Q |
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| T |
20282706 |
tggctgtgtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctacgatgtttcgtgtctt |
20282607 |
T |
|
| Q |
101 |
taggcacttgaaggatgcatctttggacagtaatggggcatgactggttatttggaaggggtaggccagnnnnnnnnnctagttgttagatgattaaggg |
200 |
Q |
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| T |
20282606 |
tgggcacttgaaggatgcatctctggacaataatggggcgtgactggttatttggaaggggtaggccag-ttttgtttctagttgttagatgattaaggg |
20282508 |
T |
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| Q |
201 |
cattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
254 |
Q |
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| T |
20282507 |
cattgaacctgttattttttgttgtaacggttttttggggatttatgatgatgt |
20282454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 14655983 - 14656113
Alignment:
| Q |
8 |
gtgggggcgacaacactaaagggttgacttgggagaagtcaaagactggttcatcagtggccatggtgtcatgtctgcgacgtttcgtgtctttaggcac |
107 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||| | || |||||||||| ||| |||||| ||||||||||| ||||||||||| || |
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| T |
14655983 |
gtgggggcgacaacattaaagggttgacatgggagaagtcaaaaatcggctcatcagtggtgatgtcgtcatgcctgcgacgttttgtgtctttaggaac |
14656082 |
T |
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| Q |
108 |
ttgaaggatgcatctttggacagtaatgggg |
138 |
Q |
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| T |
14656083 |
ttgatgggtgcgtgtttggtcagtagtgggg |
14656113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 14656174 - 14656230
Alignment:
| Q |
194 |
ttaagggcattgaacctgttattttttgttgtaacggttttttggggatttatgatg |
250 |
Q |
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| T |
14656174 |
ttaagggcattgaatttgttaattttttatgtaacggttttttgtggatttatgatg |
14656230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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