View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0755_low_114 (Length: 272)

Name: NF0755_low_114
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0755_low_114
NF0755_low_114
[»] chr7 (4 HSPs)
chr7 (30-264)||(1971118-1971360)
chr7 (54-264)||(37362425-37362622)
chr7 (74-162)||(7841360-7841448)
chr7 (210-259)||(7841460-7841508)
[»] chr1 (8 HSPs)
chr1 (30-184)||(40981488-40981640)
chr1 (30-184)||(50290459-50290611)
chr1 (185-264)||(31770889-31770966)
chr1 (186-264)||(7607901-7607977)
chr1 (34-107)||(29836269-29836342)
chr1 (58-153)||(27843642-27843737)
chr1 (58-162)||(6919604-6919708)
chr1 (63-156)||(14184747-14184840)
[»] chr3 (10 HSPs)
chr3 (38-161)||(12812821-12812944)
chr3 (30-259)||(53689267-53689483)
chr3 (54-264)||(52311477-52311676)
chr3 (30-162)||(45458409-45458540)
chr3 (88-184)||(14459162-14459256)
chr3 (63-156)||(52130851-52130943)
chr3 (34-107)||(29129160-29129233)
chr3 (86-181)||(25489560-25489653)
chr3 (197-264)||(52130959-52131024)
chr3 (29-76)||(43399475-43399522)
[»] chr4 (17 HSPs)
chr4 (30-184)||(14209362-14209514)
chr4 (30-184)||(14210313-14210465)
chr4 (30-184)||(14211282-14211434)
chr4 (30-184)||(14212233-14212385)
chr4 (30-184)||(14214170-14214322)
chr4 (30-184)||(14215139-14215291)
chr4 (30-184)||(14216108-14216260)
chr4 (30-184)||(14217059-14217211)
chr4 (30-184)||(14218010-14218162)
chr4 (30-184)||(14219949-14220101)
chr4 (30-184)||(14220900-14221052)
chr4 (30-161)||(14213223-14213354)
chr4 (30-161)||(14219001-14219132)
chr4 (30-184)||(14221869-14222021)
chr4 (30-184)||(14222838-14222990)
chr4 (73-264)||(41810243-41810426)
chr4 (58-139)||(1068910-1068991)
[»] chr2 (1 HSPs)
chr2 (30-184)||(31409598-31409750)
[»] chr8 (3 HSPs)
chr8 (30-157)||(29729269-29729396)
chr8 (58-107)||(16395613-16395662)
chr8 (58-153)||(765562-765657)
[»] scaffold0096 (1 HSPs)
scaffold0096 (58-162)||(32812-32916)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 30 - 264
Target Start/End: Original strand, 1971118 - 1971360
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  |||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| || |||||||||    
T  1971118 atgcttaccctaatttccaaaccctaaatctacttttttggctccaatctatccagaccgttagatcattataattaggggaggttagcacatcagccgt 1971217  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca----atgttactatctcacctctccattaat------ttgttcaa 219  Q
    ||||||||  |||||| ||||||||||||||||| ||||  || ||||||| |||    ||||||||||||||||||||||||| |      ||||||||    
T  1971218 tgatcaaa--tcactctttgaaaattgatacacgcgcatacagagaaacaacacaactgatgttactatctcacctctccattatttatttattgttcaa 1971315  T
Q  220 taccaatgcaaactgtacagagccccatgcttccctcttcatctc 264  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||    
T  1971316 taccaatgcaaactctacagagccccatgcttccctcttcttctc 1971360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 54 - 264
Target Start/End: Complemental strand, 37362622 - 37362425
Alignment:
Q  54 taaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgttgatcaaatctcactcattgaaaa 153  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||  | ||||| || ||||||||||||||||||||||||| |||||||    
T  37362622 taaacctacttttttggctccaatctatccagatcgttagatcattgtaattaggagcggttagcacatcagccgttgatcaaatctcactccttgaaaa 37362523  T
Q  154 ttgatacacgtgcatgtagggaaacaaaacaatgttactatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttcc 253  Q
    |||| ||||| |||  ||||||||||||||       || |    | |||||||| |||||||||||||  ||||||||| |||||||||||||||||||    
T  37362522 ttgacacacgcgca--tagggaaacaaaac-------ctct---tcttctccatt-atttgttcaatactgatgcaaactctacagagccccatgcttcc 37362436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 162
Target Start/End: Original strand, 7841360 - 7841448
Alignment:
Q  74 caatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgttgatcaaatctcactcattgaaaattgatacac 162  Q
    ||||| ||||| |||||||||||||||||| |||  |  |||| |  ||||||||||||||||||||||||| ||||||||||| ||||    
T  7841360 caatcaatccagaccgttagatcattgtaagtaggagctgttagcgcatcagccgttgatcaaatctcactccttgaaaattgaaacac 7841448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 7841460 - 7841508
Alignment:
Q  210 atttgttcaataccaatgcaaactgtacagagccccatgcttccctcttc 259  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||||    
T  7841460 atttgttcaatacca-tgcaaactctacagaaccccatgcttccctcttc 7841508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 40981640 - 40981488
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||  ||||||||    
T  40981640 atgcttaccctaatttccaaaccctaaacctacttttttggctccaatctatccagaccgttagatcattgtaattagaggaggttagcacttcagccgt 40981541  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    |||||||| ||||||| || |||||||||||||| |||  ||||||||| |||||    
T  40981540 tgatcaaaactcactctttaaaaattgatacacgcgca--tagggaaaccaaaca 40981488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 50290459 - 50290611
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    ||||||| ||||| |||| |||  |||||||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||||| || ||||| |||    
T  50290459 atgcttaacctaaattccaaaccctaaacctatttttttggctccaatttatccagaccgttagatcattataattagaggaggttagcacatcagtcgt 50290558  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    |||| ||||||||||| ||||||||||||| |||  ||  |||||||||||||||    
T  50290559 tgataaaatctcactccttgaaaattgatagacgctca--tagggaaacaaaaca 50290611  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 31770966 - 31770889
Alignment:
Q  185 atgttactatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcatctc 264  Q
    |||||| |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||    
T  31770966 atgttattatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctc 31770889  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 7607977 - 7607901
Alignment:
Q  186 tgttactatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcatctc 264  Q
    ||||| |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||    
T  7607977 tgttattatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctc 7607901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 29836269 - 29836342
Alignment:
Q  34 ttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattag 107  Q
    ||||||||||| || |||  ||||||||||||||||||||||||||||||  |||||||||||| | |||||||    
T  29836269 ttaccctaattgccaaaccctaaacctacttttttggctccaatctatcctgaccgttagatcaatctaattag 29836342  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 27843737 - 27843642
Alignment:
Q  58 cctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgtt-gatcaaatctcactcattgaaaa 153  Q
    |||||||||||||||||| | |||||  ||||||||||||||||||||| || || ||| || |||||||||| ||||||||| ||||| |||||||    
T  27843737 cctacttttttggctccattttatcctgaccgttagatcattgtaatta-agaagattagcacatcagccgttagatcaaatcacactccttgaaaa 27843642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 6919604 - 6919708
Alignment:
Q  58 cctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgtt-gatcaaatctcactcattgaaaattg 156  Q
    |||||||||||||||||| | ||| |  |||||||||||||||||||||||  |  ||| || |||||||||| ||||||||| ||||| ||||||| ||    
T  6919604 cctacttttttggctccattttattctgaccgttagatcattgtaattaga-aaaattagcacatcagccgttagatcaaatcacactctttgaaaaatg 6919702  T
Q  157 atacac 162  Q
    | ||||    
T  6919703 aaacac 6919708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 14184747 - 14184840
Alignment:
Q  63 ttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgttgatcaaatctcactcattgaaaattg 156  Q
    ||||| ||| |||||| |||||||| ||||||||||| ||| ||| || ||||| || ||||| | |||||||||| |||||| || |||||||    
T  14184747 tttttaggcgccaatcaatccaaactgttagatcattataagtaggggcggttagcacatcagtcattgatcaaatgtcactccttaaaaattg 14184840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 12812944 - 12812821
Alignment:
Q  38 cctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgttgatcaaa 137  Q
    |||||||||| |||   |||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| || |||||||||||||||||    
T  12812944 cctaatttccaaaccccaaacctacttttttcgctccaatctatccagaccgttagatcattgtaattaggggaggttagcacatcagccgttgatcaaa 12812845  T
Q  138 tctcactcattgaaaattgataca 161  Q
    ||||||||||||||||||||||||    
T  12812844 tctcactcattgaaaattgataca 12812821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 30 - 259
Target Start/End: Original strand, 53689267 - 53689483
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    ||||||||||||||| || |||  ||||||||||||||||||||||||||||||  |||||||||||||||||||||  |||||||| || ||||||| |    
T  53689267 atgcttaccctaattgccaaaccctaaacctacttttttggctccaatctatcctgaccgttagatcattgtaattaagggaggttagcacatcagccat 53689366  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaacaatgttactatctcacctctccattaatttgttcaataccaatgca 229  Q
    |||||||||||||||| ||||||||| | ||||| |||  ||||||||||||||       |  |||    |||| ||| |||||||||||||| |||||    
T  53689367 tgatcaaatctcactccttgaaaattaacacacgcgca--tagggaaacaaaac------cccttct----tctctatt-atttgttcaataccgatgca 53689453  T
Q  230 aactgtacagagccccatgcttccctcttc 259  Q
    |||| |||||||||||||||||||||||||    
T  53689454 aactctacagagccccatgcttccctcttc 53689483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 264
Target Start/End: Complemental strand, 52311676 - 52311477
Alignment:
Q  54 taaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgttgatcaaatctcactcattgaaaa 153  Q
    |||||||||||||||| |||||||||||||  |||||||||| ||||||||||| |||||||| || ||||| ||||||||||||||||||| |||||||    
T  52311676 taaacctacttttttgcctccaatctatcctgaccgttagatgattgtaattaggggaggttagcacatcagtcgttgatcaaatctcactccttgaaaa 52311577  T
Q  154 ttgatacacgtgcatgtagggaaacaaaacaatgttactatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttcc 253  Q
    |||| ||| | |||| | ||||||||||||       || |    | |||||||| |||||||||||||| ||||||||| |||||||||||||| | ||    
T  52311576 ttgacacatgcgcatatggggaaacaaaac-------ctct---tcttctccatt-atttgttcaataccgatgcaaactctacagagccccatgttgcc 52311488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 45458540 - 45458409
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagagga-ggttaacatatcagccg 128  Q
    |||||||||||||||||| ||| ||||| ||||||||||| |||||||| ||||||| ||||||||||||||||||| |||| |||||||| || ||||     
T  45458540 atgcttaccctaatttcc-aaccttaaatctacttttttgactccaatccatccaaatcgttagatcattgtaatta-aggatggttaacacatgagccc 45458443  T
Q  129 ttgatcaaatctcactcattgaaaattgatacac 162  Q
    ||||||||||||||||| ||||||||||| ||||    
T  45458442 ttgatcaaatctcactccttgaaaattgaaacac 45458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 14459256 - 14459162
Alignment:
Q  88 cgttagatcattgtaattagaggaggttaacatatcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    |||||||||||| ||| ||| |||||||| || ||||| ||||||||||||||||||| ||||||||||||||||| |||  |||||||||||||||    
T  14459256 cgttagatcattataactaggggaggttagcacatcagtcgttgatcaaatctcactccttgaaaattgatacacgagca--tagggaaacaaaaca 14459162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 52130851 - 52130943
Alignment:
Q  63 ttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgttgatcaaatctcactcattgaaaattg 156  Q
    ||||| ||| |||||| ||||| |||||||||||||||||| ||| |||||||| || |||| || ||||||||||||||||| ||||||||||    
T  52130851 tttttaggcgccaatcaatccagaccgttagatcattgtaagtaggggaggttagcacatcaaccattgatcaaatctcactc-ttgaaaattg 52130943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 29129160 - 29129233
Alignment:
Q  34 ttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattag 107  Q
    ||||||||||| || |||  ||||||||||||||||||||||||||||||  |||||||||||| | |||||||    
T  29129160 ttaccctaattgccaaaccctaaacctacttttttggctccaatctatcctgaccgttagatcaatctaattag 29129233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 25489560 - 25489653
Alignment:
Q  86 accgttagatcattgtaattagaggaggttaacatatcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaa 181  Q
    ||||||||||||||||||||||  | |||||  | |||||||||| |||||||||||||  || |||||||| |||||||||  ||||||||||||    
T  25489560 accgttagatcattgtaattaggagcggttagtacatcagccgtttatcaaatctcacttcttaaaaattgaaacacgtgca--tagggaaacaaa 25489653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 52130959 - 52131024
Alignment:
Q  197 cacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcatctc 264  Q
    |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||    
T  52130959 cacctctccatta--ttgttcaataccgatgcaaactctacagtgccccatgcttccctcttcttctc 52131024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 43399475 - 43399522
Alignment:
Q  29 aatgcttaccctaatttcctaacattaaacctacttttttggctccaa 76  Q
    ||||||||||||||||||||||| |||| ||||  |||||||||||||    
T  43399475 aatgcttaccctaatttcctaaccttaatcctaagtttttggctccaa 43399522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14209514 - 14209362
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || || |||| |    
T  14209514 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaattaggggaggttagcacatgagccat 14209415  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    ||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14209414 tgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14209362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14210465 - 14210313
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || || |||| |    
T  14210465 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaattaggggaggttagcacatgagccat 14210366  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    ||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14210365 tgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14210313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14211434 - 14211282
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || || |||| |    
T  14211434 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaattaggggaggttagcacatgagccat 14211335  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    ||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14211334 tgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14211282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14212385 - 14212233
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || || |||| |    
T  14212385 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaattaggggaggttagcacatgagccat 14212286  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    ||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14212285 tgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14212233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14214322 - 14214170
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || || |||| |    
T  14214322 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaattaggggaggttagcacatgagccat 14214223  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    ||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14214222 tgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14214170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14215291 - 14215139
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || || |||| |    
T  14215291 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaattaggggaggttagcacatgagccat 14215192  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    ||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14215191 tgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14215139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14216260 - 14216108
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || || |||| |    
T  14216260 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaattaggggaggttagcacatgagccat 14216161  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    ||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14216160 tgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14216108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14217211 - 14217059
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || || |||| |    
T  14217211 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaattaggggaggttagcacatgagccat 14217112  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    ||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14217111 tgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14217059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14218162 - 14218010
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || || |||| |    
T  14218162 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaattaggggaggttagcacatgagccat 14218063  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    ||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14218062 tgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14218010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14220101 - 14219949
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || || |||| |    
T  14220101 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaattaggggaggttagcacatgagccat 14220002  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    ||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14220001 tgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14219949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14221052 - 14220900
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || || |||| |    
T  14221052 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaattaggggaggttagcacatgagccat 14220953  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    ||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14220952 tgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14220900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 14213354 - 14213223
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || || |||| |    
T  14213354 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaattaggggaggttagcacatgagccat 14213255  T
Q  130 tgatcaaatctcactcattgaaaattgataca 161  Q
    ||||||||||||| || |||||||||||||||    
T  14213254 tgatcaaatctcattccttgaaaattgataca 14213223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 14219132 - 14219001
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || || |||| |    
T  14219132 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaattaggggaggttagcacatgagccat 14219033  T
Q  130 tgatcaaatctcactcattgaaaattgataca 161  Q
    ||||||||||||| || |||||||||||||||    
T  14219032 tgatcaaatctcattccttgaaaattgataca 14219001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14222021 - 14221869
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||| || || |||| |    
T  14222021 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattttaattaggggaggttagcacatgagccat 14221922  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    ||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14221921 tgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14221869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 14222990 - 14222838
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| ||| |||||||||||||||||| |||||||| || || |||| |    
T  14222990 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccattagatcattgtaattaggggaggttagcacatgagccat 14222891  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    ||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  14222890 tgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 14222838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 264
Target Start/End: Original strand, 41810243 - 41810426
Alignment:
Q  73 ccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgttgatcaaatctcactcattgaaaattgatacacgtgcatgtag 172  Q
    |||||| ||||| |||||||||||||||||| ||| || ||||| ||||||| || ||||||||||||||||| ||||||||||  ||||| ||  || |    
T  41810243 ccaatcaatccagaccgttagatcattgtaagtaggggcggttagcatatcaaccattgatcaaatctcactccttgaaaattgtaacacgcgc--gtcg 41810340  T
Q  173 ggaaacaaaacaatgttactatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcatctc 264  Q
    | ||||      |||||| |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||    
T  41810341 gaaaac----tgatgttattatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctc 41810426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 1068991 - 1068910
Alignment:
Q  58 cctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgtt-gatcaaatc 139  Q
    |||||||||||||||||| | |||||  || ||||||||||||||||||| | || ||| || |||||||||| |||||||||    
T  1068991 cctacttttttggctccattttatcctgactgttagatcattgtaattag-gaagattagcacatcagccgttagatcaaatc 1068910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 31409750 - 31409598
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    |||||||||||||||||| |||  | ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || || |||| |    
T  31409750 atgcttaccctaatttccaaacccttaacctacttttttggctccaaactatccagaccgttagatcattgtaattaggggaggttagcacatgagccat 31409651  T
Q  130 tgatcaaatctcactcattgaaaattgatacacgtgcatgtagggaaacaaaaca 184  Q
    ||||||||||||| || ||||||||||||||||| |||  |||| ||||||||||    
T  31409650 tgatcaaatctcattccttgaaaattgatacacgcgca--taggaaaacaaaaca 31409598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 29729396 - 29729269
Alignment:
Q  30 atgcttaccctaatttcctaacattaaacctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt 129  Q
    ||||||||||||||| || ||| ||||||||| |||||||||||||||| ||||| ||| ||||||||||||||||||  | |||||||| |||| ||||    
T  29729396 atgcttaccctaattgccaaaccttaaacctaattttttggctccaatcaatccagaccattagatcattgtaattaggagcggttaacacatcaaccgt 29729297  T
Q  130 tgatcaaatctcactcattgaaaattga 157  Q
    ||||||||||||||||  ||||||||||    
T  29729296 tgatcaaatctcactccatgaaaattga 29729269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 16395613 - 16395662
Alignment:
Q  58 cctacttttttggctccaatctatccaaaccgttagatcattgtaattag 107  Q
    |||||||||||||||||| | |||||  ||||||||||||||||||||||    
T  16395613 cctacttttttggctccattttatcctgaccgttagatcattgtaattag 16395662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 765562 - 765657
Alignment:
Q  58 cctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgtt-gatcaaatctcactcattgaaaa 153  Q
    |||||||||||||||||| | |||||  | ||||||||| |||||||||| | || ||| || |||||||||| || |||||| ||||| |||||||    
T  765562 cctacttttttggctccattttatcctgatcgttagatccttgtaattag-gaagattagcacatcagccgttagaccaaatcacactctttgaaaa 765657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 32916 - 32812
Alignment:
Q  58 cctacttttttggctccaatctatccaaaccgttagatcattgtaattagaggaggttaacatatcagccgt-tgatcaaatctcactcattgaaaattg 156  Q
    |||||||||||||||||| | |||||  ||||||||||||||||| ||| || || ||| || |||||||||  ||||||||| ||||| || |||| ||    
T  32916 cctacttttttggctccattttatcctgaccgttagatcattgtattta-agaagattagcacatcagccgtcagatcaaatcacactctttaaaaaatg 32818  T
Q  157 atacac 162  Q
    | ||||    
T  32817 aaacac 32812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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