View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_118 (Length: 270)
Name: NF0755_low_118
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_118 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 7413502 - 7413384
Alignment:
| Q |
27 |
tgatatgaaacaaaagttggaatgggagattaggcaactaaaaggattactaactgcgttgaataacacaaagggacaacaaagagttagaagatgatga |
126 |
Q |
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| T |
7413502 |
tgatatgaaacaaaagttggaatgggagattaggcaactaaaaggattactaactgcgttgaataacacaaagggacaacaaagagttagaagatgatga |
7413403 |
T |
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| Q |
127 |
tgttttggataaaataaat |
145 |
Q |
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| T |
7413402 |
tgttttggataaaataaat |
7413384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 28 - 213
Target Start/End: Original strand, 7413194 - 7413379
Alignment:
| Q |
28 |
gatatgaaacaaaagttggaatgggagattaggcaactaaaaggattactaactgcgttgaataacacaaagggacaacaaagagttagaagatgatgat |
127 |
Q |
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| T |
7413194 |
gatatgaaacaaaagtttgaatgagtgattgggcaactaaaaggatcactaactgcgttgaataacac-aagggacaagaaagatttagaagatgatgaa |
7413292 |
T |
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| Q |
128 |
g-ttttggataaaataaattaattgcagatggaattgaaggaaaagcaagagttccttcaagcctgcgaagagttgaaccaaatgat |
213 |
Q |
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| T |
7413293 |
gtttttggataaaataaattctttgcagatggaattgaaagaaaaggaagagttacttcaagcctgcgagggcctgaaccaaatgat |
7413379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 30495670 - 30495734
Alignment:
| Q |
28 |
gatatgaaacaaaagttggaatgggagattaggcaactaaaaggattactaactgcgttgaataa |
92 |
Q |
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| T |
30495670 |
gatatgaaacaaaagttggaatgggagattgggcaactaaaaggatcactaattgtgttgaataa |
30495734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 30447007 - 30447068
Alignment:
| Q |
28 |
gatatgaaacaaaagttggaatgggagattaggcaactaaaaggattactaactgcgttgaa |
89 |
Q |
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||||||||||||||| ||||| ||||||| |||||||||||||| ||||| || |||||| |
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| T |
30447007 |
gatatgaaacaaaagctggaactggagattcagcaactaaaaggatcactaagtgtgttgaa |
30447068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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