View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0755_low_122 (Length: 267)
Name: NF0755_low_122
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_122 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] scaffold0034 (1 HSPs) |
| | |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0483 (1 HSPs) |
| | |
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| [»] scaffold0008 (1 HSPs) |
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|
| [»] scaffold0192 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0002 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 76 - 267
Target Start/End: Complemental strand, 387297 - 387105
Alignment:
| Q |
76 |
gagggcgttacagccaagatctacatcgtatacgaagaagaactgtacacggacagcgcaacagatcctggaaggaggaacctgctgctgactcctccaa |
175 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
387297 |
gagggcgttacagccaagatctacatcgcatacgaagaagaactgtacacggacagcgcaacagatcctggaaggaggaacctgctgctgactcctccaa |
387198 |
T |
|
| Q |
176 |
aaagctcttccatgag-agaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacggtcacttcaccgagcacacacctttggcc |
267 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
387197 |
aaagctcttccatgagaaaaaaaaagagaaggcaaagtgactcggcaaggcaaacgacctaacggtcacttcaccgagcacacacctttggcc |
387105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 91 - 267
Target Start/End: Complemental strand, 29567126 - 29566950
Alignment:
| Q |
91 |
aagatctacatcgtatacgaagaagaactgtacacggacagcg-caacagatcctggaaggaggaacctgctgctgactcctccaaaaagctcttccatg |
189 |
Q |
| |
|
||||||||||| | ||| |||||||| |||||| |||||||| ||||| |||| |||||||||||||||||||||| ||||||||||| | |||||||| |
|
|
| T |
29567126 |
aagatctacatagcatatgaagaagagctgtacgcggacagcctcaacaaatccaggaaggaggaacctgctgctgaatcctccaaaaatcccttccatg |
29567027 |
T |
|
| Q |
190 |
agagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacggtcacttcaccgagcacacacctttggcc |
267 |
Q |
| |
|
||| |||| || |||||||||| ||||| ||||| ||| |||| |||||||||||||| ||| ||||||| |||||| |
|
|
| T |
29567026 |
aga-aaaagagggaaggcaaagcaactcgtgaaggaaaacgacccaacggtcacttcactgagtacacacccttggcc |
29566950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 267
Target Start/End: Complemental strand, 23928474 - 23928301
Alignment:
| Q |
94 |
atctacatcgtatacgaagaagaactgtacacggacagcg-caacagatcctggaaggaggaacctgctgctgactcctccaaaaagctcttccatgaga |
192 |
Q |
| |
|
|||||||||| ||| |||||||| || || |||||||| ||||| |||| |||||||||| ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
23928474 |
atctacatcgcatatgaagaagagctatatgcggacagcctcaacaaatccaggaaggaggagcctgctgctgaatcctccaaaaagcccttccatgaga |
23928375 |
T |
|
| Q |
193 |
gaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacggtcacttcaccgagcacacacctttggcc |
267 |
Q |
| |
|
|||| || |||||||| || ||||| ||||||||| ||| ||| |||||||||||||| | ||||| |||||| |
|
|
| T |
23928374 |
-aaaagagggaaggcaaggtaactcgtgaaggcaaaatacccaacagtcacttcaccgagtatacacccttggcc |
23928301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 260
Target Start/End: Complemental strand, 27345853 - 27345728
Alignment:
| Q |
134 |
caacagatcctggaaggaggaacctgctgctgactcctccaaaaagctcttccatgagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacc |
233 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||| ||||||||||||| |||||| |||| ||| ||| |||||||| | ||||| | ||||||| |||| |
|
|
| T |
27345853 |
caacaaatccaggaaggaggagcctgctgctgagtcctccaaaaagcccttccacgagaaaaagaag-gaaggcaagggtactcggggaggcaaaagacc |
27345755 |
T |
|
| Q |
234 |
taacggtcacttcaccgagcacacacc |
260 |
Q |
| |
|
|||||||||||||| ||| ||||||| |
|
|
| T |
27345754 |
caacggtcacttcacagagtacacacc |
27345728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 19027244 - 19027183
Alignment:
| Q |
150 |
gaggaacctgctgctgactcctccaaaaagctcttccatgagagaaaaaagagaaggcaaagt |
212 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |||||| |||| ||| ||| ||||||||||| |
|
|
| T |
19027244 |
gaggaaactgctgctgaatcctccaaaaagcccttccacgagaaaaagaag-gaaggcaaagt |
19027183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 260
Target Start/End: Original strand, 26221 - 26393
Alignment:
| Q |
88 |
gccaagatctacatcgtatacgaagaagaactgtacacggacagcg-caacagatcctggaaggaggaacctgctgctgactcctccaaaaagctcttcc |
186 |
Q |
| |
|
|||||||||| ||||| |||||| || || |||||| |||||| | ||||| |||| |||||||||| ||||||||||| ||||||||||| | ||||| |
|
|
| T |
26221 |
gccaagatcttcatcgcatacgaggaggagctgtacgcggacaacctcaacaaatccaggaaggaggagcctgctgctgaatcctccaaaaatcccttcc |
26320 |
T |
|
| Q |
187 |
atgagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacggtcacttcaccgagcacacacc |
260 |
Q |
| |
|
|||||| |||| || ||||||||||||||| | ||||||||| |||||||| ||||||||| | || ||||||| |
|
|
| T |
26321 |
atgaga-aaaagagggaaggcaaagtgactagggaaggcaaacgacctaacagtcacttcatcaagtacacacc |
26393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 267
Target Start/End: Original strand, 19861539 - 19861718
Alignment:
| Q |
88 |
gccaagatctacatcgtatacgaagaagaactgtacacggacagcg-caacagatcctggaaggaggaacctgctgctgactcctccaaaaagctcttcc |
186 |
Q |
| |
|
|||||||||||||||| ||||||||| || ||||| | |||| | ||||| |||| ||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
19861539 |
gccaagatctacatcgcatacgaagaggagctgtatgcagacaacctcaacaaatccaagaaggaggagcctgctgctgaatcctccaaaaagctcttcc |
19861638 |
T |
|
| Q |
187 |
atgagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacggtcacttcaccgagcacacacctttggcc |
267 |
Q |
| |
|
|| ||| |||| || ||||||||||||||| | ||| | ||| ||||||||||||| ||||||||| |||| || |||||| |
|
|
| T |
19861639 |
attaga-aaaagagggaaggcaaagtgactagggaatgaaaacgacctaacggtcaattcaccgagtacacgcccttggcc |
19861718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 257
Target Start/End: Complemental strand, 27964330 - 27964161
Alignment:
| Q |
88 |
gccaagatctacatcgtatacgaagaagaactgtacacggacagcg-caacagatcctggaaggaggaacctgctgctgactcctccaaaaagctcttcc |
186 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||| |||||| || ||||| |||| |||||||||| |||||||||| |||||||||| || ||||| |
|
|
| T |
27964330 |
gccaagatctacatcgcttatgaagaagagctgtatgcggacaacgtcaacaaatccaggaaggaggagtctgctgctgagtcctccaaaatgcccttcc |
27964231 |
T |
|
| Q |
187 |
atgagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacggtcacttcaccgagcacac |
257 |
Q |
| |
|
| |||| |||||| |||||||| | ||||| ||||||||| |||| |||| | ||||||||||| |||| |
|
|
| T |
27964230 |
acgagaagaaaaag-gaaggcaaggctactcgggaaggcaaaagacccaacgattacttcaccgagtacac |
27964161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 258
Target Start/End: Complemental strand, 18734651 - 18734528
Alignment:
| Q |
134 |
caacagatcctggaaggaggaacctgctgctgactcctccaaaaagctcttccatgagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacc |
233 |
Q |
| |
|
||||| |||| |||||||||| ||||||| ||| |||| |||||| | ||||||||| | |||| || ||||||||||||||||| ||||| ||| |||| |
|
|
| T |
18734651 |
caacaaatccaggaaggaggagcctgctgttgaatccttcaaaaatcccttccatgaca-aaaagagggaaggcaaagtgactcgtgaaggaaaacgacc |
18734553 |
T |
|
| Q |
234 |
taacggtcacttcaccgagcacaca |
258 |
Q |
| |
|
|| ||||||||||| ||| ||||| |
|
|
| T |
18734552 |
caatggtcacttcacagagtacaca |
18734528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 257
Target Start/End: Original strand, 21335951 - 21336120
Alignment:
| Q |
88 |
gccaagatctacatcgtatacgaagaagaactgtacacggacagcg-caacagatcctggaaggaggaacctgctgctgactcctccaaaaagctcttcc |
186 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||||| | ||| | ||| | |||| ||||| |||| ||||||||| | ||||||||||||| ||||| |
|
|
| T |
21335951 |
gccaagatctacatcgcatacgaagaggagctgtacgtgtacaacctcaaaaaatccaggaagaaggagcctgctgctaaatcctccaaaaagcccttcc |
21336050 |
T |
|
| Q |
187 |
atgagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacggtcacttcaccgagcacac |
257 |
Q |
| |
|
|||||| |||| || ||||||||||||||| | |||| |||| ||||||| || |||||||||||| |||| |
|
|
| T |
21336051 |
atgaga-aaaagagggaaggcaaagtgactagggaagacaaacgacctaatggccacttcaccgagtacac |
21336120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 260
Target Start/End: Original strand, 18278014 - 18278133
Alignment:
| Q |
140 |
atcctggaaggaggaacctgctgctgactcctccaaaaagctcttccatgagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacgg |
239 |
Q |
| |
|
|||| ||| |||||| ||||||||||| ||||||||||||| |||||| |||| ||| ||| |||||||| | ||||| ||||| ||| |||| ||||| |
|
|
| T |
18278014 |
atccaggacggaggagcctgctgctgagtcctccaaaaagcccttccacgagaaaaagaag-gaaggcaaggctactcgggaaggtaaaagacccaacgg |
18278112 |
T |
|
| Q |
240 |
tcacttcaccgagcacacacc |
260 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
18278113 |
tcacttcaccgagtacacacc |
18278133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 15311683 - 15311586
Alignment:
| Q |
162 |
gctgactcctccaaaaagctcttccatgagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacggtcacttcaccgagcacacacc |
260 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| ||||||| |||||| |||||| | ||||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
15311683 |
gctgaatcctccaaaaagcccttccatgaga-aaaaaagttaaggcagagtgacgagggaaggcaaacgacctaacagtcacttcaccgagtacacacc |
15311586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 252
Target Start/End: Complemental strand, 15454431 - 15454326
Alignment:
| Q |
146 |
gaaggaggaacctgctgctgactcctccaaaaagctcttccatgagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacggtcactt |
245 |
Q |
| |
|
||||||||| |||| |||||| ||||||||||||| ||||||||||| ||| || ||||||||||| |||| |||||||| ||| |||||||| ||| |
|
|
| T |
15454431 |
gaaggaggagcctgatgctgaatcctccaaaaagcccttccatgaga-taaagagggaaggcaaagtagctcgcaaaggcaaaggacttaacggtcgctt |
15454333 |
T |
|
| Q |
246 |
caccgag |
252 |
Q |
| |
|
||||||| |
|
|
| T |
15454332 |
caccgag |
15454326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 10270097 - 10270161
Alignment:
| Q |
145 |
ggaaggaggaacctgctgctgactcctccaaaaagctcttccatgagagaaaaaagagaaggcaaa |
210 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| ||||||||||| |||| || ||||||||| |
|
|
| T |
10270097 |
ggaaggaggagcctgctgctgaatcctccaaaaagcccttccatgaga-aaaagagggaaggcaaa |
10270161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 16288085 - 16288020
Alignment:
| Q |
145 |
ggaaggaggaacctgctgctgactcctccaaaaagctcttccatgagagaaaaaagagaaggcaaag |
211 |
Q |
| |
|
|||||||||| |||||| |||| ||||||||||||| ||||||||||| |||| || |||||||||| |
|
|
| T |
16288085 |
ggaaggaggagcctgcttctgaatcctccaaaaagcccttccatgaga-aaaagagggaaggcaaag |
16288020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 10270153 - 10270190
Alignment:
| Q |
220 |
gaaggcaaatgacctaacggtcacttcaccgagcacac |
257 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
10270153 |
gaaggcaaacgacctaacggtcacttcaccgagtacac |
10270190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 248
Target Start/End: Original strand, 22619334 - 22619494
Alignment:
| Q |
88 |
gccaagatctacatcgtatacgaagaagaactgtacacggacagcg-caacagatcctggaaggaggaacctgctgctgactcctccaaaaagctcttcc |
186 |
Q |
| |
|
||||||||||||||| ||| || ||||| ||||| |||||| | ||||| |||| |||||||||| ||||||||||| | ||||||||||| ||||| |
|
|
| T |
22619334 |
gccaagatctacatcagatatgaggaagagctgtatgcggacaacctcaacaaatccaggaaggaggagcctgctgctgaattctccaaaaagcccttcc |
22619433 |
T |
|
| Q |
187 |
atgagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacggtcacttcac |
248 |
Q |
| |
|
|||||| ||| ||| ||||||||||| ||| ||||||||| |||| ||||||| |||||| |
|
|
| T |
22619434 |
atgagaaaaagaag-gaaggcaaagtagctcatgaaggcaaaggacccaacggtcccttcac |
22619494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 248
Target Start/End: Original strand, 24975287 - 24975447
Alignment:
| Q |
88 |
gccaagatctacatcgtatacgaagaagaactgtacacggacagcg-caacagatcctggaaggaggaacctgctgctgactcctccaaaaagctcttcc |
186 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||| ||||||| | ||||| |||| |||| ||||| ||||||||||| ||||||||||| | ||||| |
|
|
| T |
24975287 |
gccaagatctacatcgcctatgaagaagagctgtatacggacaacctcaacaaatccaggaaagaggagcctgctgctgagtcctccaaaaaacccttcc |
24975386 |
T |
|
| Q |
187 |
atgagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacggtcacttcac |
248 |
Q |
| |
|
| |||| || ||| |||||||| | ||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
24975387 |
acgagaagaagaag-gaaggcaaggctactcgggaaggcaaaagacccaacggtcacttcac |
24975447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 23934999 - 23935044
Alignment:
| Q |
145 |
ggaaggaggaacctgctgctgactcctccaaaaagctcttccatga |
190 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| |||| |||| |
|
|
| T |
23934999 |
ggaaggaggagcctgctgctgaatcctccaaaaagcccttctatga |
23935044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0483 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0483
Description:
Target: scaffold0483; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 252
Target Start/End: Complemental strand, 7941 - 7835
Alignment:
| Q |
145 |
ggaaggaggaacctgctgctgactcctccaaaaagctcttccatgagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacggtcact |
244 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||| || ||||||||||| ||| ||| ||||||||||| |||| ||||||||| ||||||||| || || |
|
|
| T |
7941 |
ggaaggaggagcctgcttctgaatcctccaaaacgcccttccatgagaaaaagaag-gaaggcaaagtagctcgcgaaggcaaaggacctaacgatcgct |
7843 |
T |
|
| Q |
245 |
tcaccgag |
252 |
Q |
| |
|
|||||||| |
|
|
| T |
7842 |
tcaccgag |
7835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 267
Target Start/End: Complemental strand, 252019 - 251887
Alignment:
| Q |
134 |
caacagatcctggaaggaggaacctgctgctgactcctccaaaaagctcttccatgagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacc |
233 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||| |||||||| | |||| |||| ||| |||| |
|
|
| T |
252019 |
caacaaatccaggaaggaggagcctgctgctgaatcctccaaaaagcccttccatgaga-aaaaaagggaaggcaagttaactcatgaagctaaaagacc |
251921 |
T |
|
| Q |
234 |
taacggtcacttcaccgagcacacacctttggcc |
267 |
Q |
| |
|
||| |||||||||||| | | ||||| |||||| |
|
|
| T |
251920 |
caacagtcacttcaccgggtatacacccttggcc |
251887 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 23491146 - 23490986
Alignment:
| Q |
90 |
caagatctacatcgtatacgaagaagaactgtacacggacagcg-caacagatcctggaaggaggaacctgctgctgactcctccaaaaagctcttccat |
188 |
Q |
| |
|
|||||||||||||| || |||||||| ||||| |||||| | ||||| ||| |||||||||| ||| ||||||| ||||||||||||| |||||| |
|
|
| T |
23491146 |
caagatctacatcgcctatgaagaagagctgtatgcggacaacctcaacaaatctaggaaggaggagcctactgctgagtcctccaaaaagcccttccac |
23491047 |
T |
|
| Q |
189 |
gagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacggtcacttcaccg |
250 |
Q |
| |
|
|||| || ||| |||||||| | ||||| ||||||||| |||| |||||| ||||||||| |
|
|
| T |
23491046 |
gagaagaagaag-gaaggcaaggctactcgggaaggcaaaagacccaacggttacttcaccg |
23490986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 42791070 - 42791023
Alignment:
| Q |
220 |
gaaggcaaatgacctaacggtcacttcaccgagcacacacctttggcc |
267 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
42791070 |
gaaggcaaacgacctaacggtcacttcaccgagtacacacccttggcc |
42791023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 18184326 - 18184205
Alignment:
| Q |
88 |
gccaagatctacatcgtatacgaagaagaactgtacacggacagcg-caacagatcctggaaggaggaacctgctgctgactcctccaaaaagctcttcc |
186 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||| |||||| | ||||| |||| ||||||||| ||||||||||| |||||||||||| ||| | |
|
|
| T |
18184326 |
gccaagatctacatcgcctatgaagaagagctgtatgcggacatcctcaacaaatccaagaaggaggagcctgctgctgaatcctccaaaaagaccttgc |
18184227 |
T |
|
| Q |
187 |
atgagagaaaaaagagaaggcaa |
209 |
Q |
| |
|
|||||| ||| ||| |||||||| |
|
|
| T |
18184226 |
atgagaaaaagaag-gaaggcaa |
18184205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 1854365 - 1854320
Alignment:
| Q |
145 |
ggaaggaggaacctgctgctgactcctccaaaaagctcttccatga |
190 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||| ||||||||| |
|
|
| T |
1854365 |
ggaaggagaaacctgctgctgagtcctcctaaaagcccttccatga |
1854320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0192 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0192
Description:
Target: scaffold0192; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 8716 - 8603
Alignment:
| Q |
146 |
gaaggaggaacctgctgctgactcctccaaaaagctcttccatgagagaaaaaagagaaggcaaagtgactcgagaaggcaaatgacctaacggtcactt |
245 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||| ||||||||||| |||| || ||||| ||||| ||| ||||||||| ||| | ||||| ||| |
|
|
| T |
8716 |
gaaggaggagcctactgctgtatcctccaaaaagcccttccatgaga-aaaagagggaaggaaaagtagctcatgaaggcaaagtaccgaccggtcgctt |
8618 |
T |
|
| Q |
246 |
caccgagcacacacc |
260 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
8617 |
taccgagaacacacc |
8603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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