View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_124 (Length: 266)
Name: NF0755_low_124
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_124 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 13731438 - 13731193
Alignment:
| Q |
1 |
tgatgtggtggaaggtgatggtgaaggggacaatatggtaataggtgtaggattgaaaatatgagtagggctgtaagaaggaatagaaggagttggagat |
100 |
Q |
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| T |
13731438 |
tgatgtggtggaaggtgatggtgaaggggacaatatggtaataggtgtaggattgaaaatatgagcagggttgtaagaaggaatagaaggagttggagat |
13731339 |
T |
|
| Q |
101 |
gcaggtgacaaaataggagactgctaggaagaagtaggagagggtgagttctgaccagcagaaggtataggtgaatgaaaattggaagaggaatttgtag |
200 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13731338 |
gcaggtgtcaaaataggagactgctgggaagaagtaggagagggtgagttctgaccagcagaaggtataggtgaatgaaaattggaagaggaatttgtag |
13731239 |
T |
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| Q |
201 |
tggaatttggagaggtagtagagtttgtgggggatgatgatgatgt |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13731238 |
tggaatttggagaggtagtagagtttgtgggggatgatgatgatgt |
13731193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 25229238 - 25229467
Alignment:
| Q |
1 |
tgatgtggtggaaggtgatggtgaaggggacaatatggtaataggtgtaggattgaaaatatgagtagggctgtaagaaggaatagaaggagttggagat |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25229238 |
tgatgtggtggaaggtgattgtgaaggggacaatatggtaataggtgtaggattgaaaatatgagtaggtctgtaagaaggaatagaaggagttggagat |
25229337 |
T |
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| Q |
101 |
gcaggtgacaaaataggagactgctaggaagaagtaggagagggtgagttctgaccagcagaaggtataggtgaatgaaaattggaagaggaatttgtag |
200 |
Q |
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||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25229338 |
gcatgtgtcaaaataggagactgctgggaagaagtaggagagggtgagttctgaccagc---aggtataggtgaatgaaaattggaaga----------- |
25229423 |
T |
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| Q |
201 |
tggaatttggagaggtagtagagtttgtgggggatgatgatgatg |
245 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
25229424 |
-ggaatgcggagaggtagtagagtttgtgggggatgatgatgatg |
25229467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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