View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_130 (Length: 261)
Name: NF0755_low_130
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_130 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 1758224 - 1758082
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
1758224 |
agactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttggtgagcagatgatgatg |
1758125 |
T |
|
| Q |
101 |
atggtgaacagcgtttgacagagtttttgtgagagtgatgatg |
143 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
1758124 |
atggtgaacggcgtttgacagagtttttgtgagagtgatgatg |
1758082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 29569724 - 29569867
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |
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| T |
29569724 |
agactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttggtgagcagatgatgatg |
29569823 |
T |
|
| Q |
101 |
atggtgaacagcgtttgacagagtttttgtgagagtgatgatgt |
144 |
Q |
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||||||||| ||||||||||||||| ||||||| |||||||||| |
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| T |
29569824 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatgt |
29569867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 27918726 - 27918584
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||||| ||||||| |
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| T |
27918726 |
agactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttggtgagcagaagatgatg |
27918627 |
T |
|
| Q |
101 |
atggtgaacagcgtttgacagagtttttgtgagagtgatgatg |
143 |
Q |
| |
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||||||||| ||||||||||||||| ||||||| ||||||||| |
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|
| T |
27918626 |
atggtgaactgcgtttgacagagttgttgtgagtgtgatgatg |
27918584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 29568393 - 29568535
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||| |
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| T |
29568393 |
agactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagttggtgagcagaagatgatg |
29568492 |
T |
|
| Q |
101 |
atggtgaacagcgtttgacagagtttttgtgagagtgatgatg |
143 |
Q |
| |
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|||||||| |||||||| |||||||||||||| ||||||||| |
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| T |
29568493 |
atggtgaatggcgtttgaaagagtttttgtgagtgtgatgatg |
29568535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 29168331 - 29168189
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||| ||||||| |
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| T |
29168331 |
agactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgcttattggatgatagttggtgagcagaagatgatg |
29168232 |
T |
|
| Q |
101 |
atggtgaacagcgtttgacagagtttttgtgagagtgatgatg |
143 |
Q |
| |
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||||||||| |||||||||||||| ||||||| ||||||||| |
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|
| T |
29168231 |
atggtgaacgacgtttgacagagttgttgtgagtgtgatgatg |
29168189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 29425372 - 29425232
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29425372 |
agactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgagcagatgatgatg |
29425273 |
T |
|
| Q |
101 |
at---ggtgaacagcgtttgacagagtttttgtgagagtga |
138 |
Q |
| |
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|| ||||||| ||||||||||||||| ||||||| |||| |
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| T |
29425272 |
atggtggtgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 27521359 - 27521501
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
27521359 |
agactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgggcagatgatgatg |
27521458 |
T |
|
| Q |
101 |
atggtgaacagcgtttgacagagtttttgtgagagtgatgatg |
143 |
Q |
| |
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||||||||| ||||||||||||||| ||||||| ||||||||| |
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|
| T |
27521459 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
27521501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 18986176 - 18986034
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
18986176 |
agactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgacggttggtgagcagatgatgatg |
18986077 |
T |
|
| Q |
101 |
atggtgaacagcgtttgacagagtttttgtgagagtgatgatg |
143 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||| ||||||||| |
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|
| T |
18986076 |
atggtgaacagagtttgacagtgttgttgtgagggtgatgatg |
18986034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 27462076 - 27461934
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
27462076 |
agactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgataagatgatgatg |
27461977 |
T |
|
| Q |
101 |
atggtgaacagcgtttgacagagtttttgtgagagtgatgatg |
143 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||||| ||||||||| |
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|
| T |
27461976 |
atggtgaacggcgtttgacagtgttgttgtgagtgtgatgatg |
27461934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 27482215 - 27482073
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
27482215 |
agactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttggtgataagatgatgatg |
27482116 |
T |
|
| Q |
101 |
atggtgaacagcgtttgacagagtttttgtgagagtgatgatg |
143 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
27482115 |
atggtgaacggcgtttgacagtgttgttgtgagtgtgatgatg |
27482073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 25518560 - 25518418
Alignment:
| Q |
1 |
agaccgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggctggtgagcagatgatgatg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||| |
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|
| T |
25518560 |
agactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggttggtgaggagaagatgatg |
25518461 |
T |
|
| Q |
101 |
atggtgaacagcgtttgacagagtttttgtgagagtgatgatg |
143 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
25518460 |
atggtgaacggcgtttgacagagttgttgtgagtgtgatgatg |
25518418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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