View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_143 (Length: 255)
Name: NF0755_low_143
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_143 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23134881 - 23134642
Alignment:
| Q |
1 |
acagccacaagaccacacctgaatcgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccac |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134881 |
acagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccac |
23134782 |
T |
|
| Q |
101 |
cttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23134781 |
cttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagac |
23134682 |
T |
|
| Q |
201 |
caaattggtgaaactagctatcataaggatgatgtccatc |
240 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
23134681 |
caaattggtgaaactagctatcataaggatgatgttcatc |
23134642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 20282700 - 20282939
Alignment:
| Q |
1 |
acagccacaagaccacacctgaatcgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccac |
100 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20282700 |
acagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccac |
20282799 |
T |
|
| Q |
101 |
cttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20282800 |
cttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagac |
20282899 |
T |
|
| Q |
201 |
caaattggtgaaactagctatcataaggatgatgtccatc |
240 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
20282900 |
caaattggtgaaactagctatcataaggatgatgttcatc |
20282939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 11894999 - 11895238
Alignment:
| Q |
1 |
acagccacaagaccacacctgaatcgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccac |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11894999 |
acagccacaagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccac |
11895098 |
T |
|
| Q |
101 |
cttagtcaataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagac |
200 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11895099 |
cttagtcaataatccaacacctgaacccgacccgaattcaagtttcatgctcgccacccccattctaaatgaccaagaagctaaccaccccacaaaagac |
11895198 |
T |
|
| Q |
201 |
caaattggtgaaactagctatcataaggatgatgtccatc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11895199 |
caaattggtgaaactagctatcataaggatgatgttcatc |
11895238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 14655975 - 14655859
Alignment:
| Q |
8 |
caagaccacacctgaatcgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtc |
107 |
Q |
| |
|
|||| |||| |||||| |||||||||| |||||||| ||||| ||||||| ||||||||||||||| ||||||| |||| |||||| ||||| | || |
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| T |
14655975 |
caaggccactcctgaaccgcacgtgcctaaaacaactcaacaattaccaaataaacaaactaccactaatgaagctcaaaaaaatgttcccattgttatc |
14655876 |
T |
|
| Q |
108 |
aataatccaacacctga |
124 |
Q |
| |
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||||||| ||||||||| |
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| T |
14655875 |
aataatcaaacacctga |
14655859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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