View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_144 (Length: 254)
Name: NF0755_low_144
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_144 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 27254358 - 27254601
Alignment:
| Q |
1 |
ttgcttcaccaacataacctaaaccagaatcaggtgcaactttatccaaaatagaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27254358 |
ttgcttcaccaacataacctaaaccagaatcaggtgcaagtttatccaaaatagaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgt |
27254457 |
T |
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| Q |
101 |
aacaacatcatagaaacgctttctaggaatagcctgaaatattacagaatttgacataacctcagcacattagaatataaataataaaatttctaaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27254458 |
aacaacatcatagaaacgctttctaggaatagcctgaaatattacagaatttgacataacctcagcacattagaatataaataataaaatttctaaacta |
27254557 |
T |
|
| Q |
201 |
cacaatgaataaatagagtattgggaactcacacgacatctgtg |
244 |
Q |
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| T |
27254558 |
cacaatgaataaatagagtattgggaactcacacgacatctgtg |
27254601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 27294481 - 27294647
Alignment:
| Q |
1 |
ttgcttcaccaacataacctaaaccagaatcaggtgcaactttatccaaaatagaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgt |
100 |
Q |
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| T |
27294481 |
ttgcttcaccaacataacctaaaccacaatccggtgcaagtttacccaaaatagaagtcaatgccatgctcccaaatggtacagcaaccccattcttcgt |
27294580 |
T |
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| Q |
101 |
aacaacatcatagaaacgctttctaggaatagcctgaaatattacagaatttgacataacctcagcacat |
170 |
Q |
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| T |
27294581 |
aacaacatcatagaaacgctttctaggaatagcctga---attacagaaattgacataacctcagaacat |
27294647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 27425934 - 27425868
Alignment:
| Q |
73 |
caaatggtaaagcaaccccattcttcgtaacaacatcatagaaacgctttctaggaatagcctgaaa |
139 |
Q |
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| T |
27425934 |
caaatgctaaaccaaccccgttcttcgaaacaacatcattgaaacgctttctaggaacagcctgaaa |
27425868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 12763 - 12901
Alignment:
| Q |
1 |
ttgcttcaccaacataacctaaaccagaatcaggtgcaactttatccaaaatagaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgt |
100 |
Q |
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||||||||||||| |||||||||||||| ||| || | | |||||||| |||||||| ||||||| || |||||| |||| |||| |||||||| || |
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| T |
12763 |
ttgcttcaccaactgaacctaaaccagaaccagctggagatccatccaaaaaagaagtcattaccatactcacaaatgctaaaccaacaccattcttagt |
12862 |
T |
|
| Q |
101 |
aacaacatcatagaaacgctttctaggaatagcctgaaa |
139 |
Q |
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| T |
12863 |
aacaacatcatagaaacgctttctaggaatagcctgaaa |
12901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 13354464 - 13354343
Alignment:
| Q |
18 |
cctaaaccagaatcaggtgcaactttatccaaaatagaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgtaacaacatcatagaaac |
117 |
Q |
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|||| |||||| |||||||| | |||| |||| |||||||| ||| ||| | |||||| |||| ||| |||||||||| ||||||||||||||||| |
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| T |
13354464 |
cctagaccagagccaggtgcaggtctatctaaaacagaagtcattacgatacttacaaatgctaaaccaatcccattcttcttaacaacatcatagaaat |
13354365 |
T |
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| Q |
118 |
gctttctaggaatagcctgaaa |
139 |
Q |
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| T |
13354364 |
gctttctaggaatagcctgaaa |
13354343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 6792420 - 6792298
Alignment:
| Q |
1 |
ttgcttcaccaacataacctaaaccagaatcaggtgcaactttatccaaaatagaagtcaataccatagtcccaaatggtaaagcaaccccattcttcgt |
100 |
Q |
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|||||||||||| | ||||||||||| || || ||||| | ||||||||| |||||||| ||||||| || || || |||||||||||||||||| || |
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| T |
6792420 |
ttgcttcaccaataaaacctaaaccataagcacgtgcaggtctatccaaaacagaagtcattaccatattctcatctgctaaagcaaccccattctttgt |
6792321 |
T |
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| Q |
101 |
aacaacatcatagaaacgctttc |
123 |
Q |
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|||| ||||||| ||| |||||| |
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| T |
6792320 |
aacatcatcataaaaatgctttc |
6792298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 6799631 - 6799525
Alignment:
| Q |
1 |
ttgcttcaccaacataacctaaaccagaatcaggtgcaactttatccaaaatagaag---tcaataccatagtcccaaatggtaaagcaaccccattctt |
97 |
Q |
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|||||||||||| | ||||||||||| || ||||||| | ||||||||| ||||| ||| ||||||||||||| || |||| ||||||||||||| |
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| T |
6799631 |
ttgcttcaccaataaaacctaaaccataagaaggtgcaggtctatccaaaaaagaagaagtcattaccatagtcccatctgctaaaccaaccccattctt |
6799532 |
T |
|
| Q |
98 |
cgtaaca |
104 |
Q |
| |
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|||||| |
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|
| T |
6799531 |
tgtaaca |
6799525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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