View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0755_low_147 (Length: 252)
Name: NF0755_low_147
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_147 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 18016343 - 18016430
Alignment:
| Q |
8 |
tgagatgaagacaactaatgacgtagaaagttgcggggttcgacattttagaagcatcactccattaggttaggttcatagttttggg |
95 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18016343 |
tgagacgaagacaactaatgacgtagaaagttgtggggttcgacattttagaagcatcactccattaggttaggttcatagttttggg |
18016430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 24209283 - 24209362
Alignment:
| Q |
103 |
agacaaaatgtatacatggttcacttattttggtagtagttattaaatgtccgattttgagtattttaatctgttatgaa |
182 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||| || | |||||||||||||||| ||||||| |
|
|
| T |
24209283 |
agacaaaatgtatacatagtacacttattttggtagtagttattaaatgcccaagtttgagtattttaatcatttatgaa |
24209362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 252
Target Start/End: Original strand, 37258840 - 37258962
Alignment:
| Q |
129 |
attttggtagtagttattaaatgtccgattttgagtattttaatctgttatgaactttttgggatgtataataattattaatgattttttcgaagtttgt |
228 |
Q |
| |
|
|||||||||||||||| |||||| || |||||||||||||||| |||||||||||||| |||||||||||||||||| || ||| |||||||||| |
|
|
| T |
37258840 |
attttggtagtagttactaaatgcccatctttgagtattttaatcggttatgaacttttt-ggatgtataataattatttcagaatttgacgaagtttgt |
37258938 |
T |
|
| Q |
229 |
ttatcaaacaatttaaaattaatt |
252 |
Q |
| |
|
||||||||||||| | |||||||| |
|
|
| T |
37258939 |
ttatcaaacaattcataattaatt |
37258962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 31627958 - 31628065
Alignment:
| Q |
8 |
tgagatgaagacaactaatgacgtagaaagttgcggggttcgacattttagaagcatcactccattaggttaggttcatagttttgggaaatagaagaca |
107 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| |||||| ||||||||||||||||| || |||| ||||||||| |||| ||||| | ||| ||||| |
|
|
| T |
31627958 |
tgagacgaagacaactaatgacgtcgaaagttgtggggtttgacattttagaagcatctcttcattgggttaggttgatag-tttggatattagtagaca |
31628056 |
T |
|
| Q |
108 |
aaatgtata |
116 |
Q |
| |
|
||||||||| |
|
|
| T |
31628057 |
aaatgtata |
31628065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 252
Target Start/End: Original strand, 1682284 - 1682486
Alignment:
| Q |
45 |
gttcgacattttagaagcatcactccattaggttaggttcatagttttgggaaatagaagacaaaatgtatacatggttcacttattttggtagtagtta |
144 |
Q |
| |
|
|||| ||||||| |||| |||||| |||||| || |||| ||||||| || || ||| |||||||||| || || || | || |||||||||||||||| |
|
|
| T |
1682284 |
gttcaacatttt-gaagtatcacttcattagattcggttgatagttt-ggaaattagtagacaaaatgcctatatagtactctaattttggtagtagtta |
1682381 |
T |
|
| Q |
145 |
ttaaatgtccgattttgagtattttaatctgttatgaactttttgggatgtataataattattaatgattttttcgaagtttgtttatcaaacaatttaa |
244 |
Q |
| |
|
|||||| || |||||||| |||| |||| ||| || ||||| ||||| ||| || ||| | || || | |||||||||||||||||| ||||| |
|
|
| T |
1682382 |
ctaaatgcccaattttgagcatttaaatcatttacgatttttttcggatgcatacta---atttacgagttctacgaagtttgtttatcaaatgatttat |
1682478 |
T |
|
| Q |
245 |
aattaatt |
252 |
Q |
| |
|
|||||||| |
|
|
| T |
1682479 |
aattaatt |
1682486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 237
Target Start/End: Complemental strand, 31904454 - 31904328
Alignment:
| Q |
108 |
aaatgtatacatggttcacttattttggtagtagttattaaatgtccgattttgagtattttaatctgttatgaactttttgggatgtataataattatt |
207 |
Q |
| |
|
|||||||||||| | | ||||||||||||||| |||||||||| || |||||||||||||||| ||||||| ||||| ||||||| |||||||| | |
|
|
| T |
31904454 |
aaatgtatacatagaactcttattttggtagtatttattaaatg-ccttttttgagtattttaattatttatgaa-tttttaggatgta-aataattaat |
31904358 |
T |
|
| Q |
208 |
aatgattttttcgaagtttgtttatcaaac |
237 |
Q |
| |
|
|||| |||| |||| |||||||||||||| |
|
|
| T |
31904357 |
tatgaattttacgaaatttgtttatcaaac |
31904328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5303 times since January 2019
Visitors: 4847