View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_15 (Length: 479)
Name: NF0755_low_15
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 25 - 282
Target Start/End: Original strand, 8287864 - 8288127
Alignment:
| Q |
25 |
catcatcattaggaaacagaaacagaaagctcaggtgggaaagtgaaatcagagttgagaaagagagatgacagagaacgcatatataaggtttgagagg |
124 |
Q |
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| T |
8287864 |
catcatcattaggaaacaaaaacagaaagctcaggtgggaaagtgaaatcagagttgagaaagagagatgacagagaacgcatatataaggtttgagagg |
8287963 |
T |
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| Q |
125 |
agagataa-nnnnnnnnnnnnnaattcaaatttccacatgagggtgtatattataagggtctataactaattatccataa------aaaagagtaatgtt |
217 |
Q |
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| T |
8287964 |
agagataattttttatttttttaattcaaatttccacatgagggtgtatattataa-ggtctataactaattatccataaaaaaataaaagagtaatgtt |
8288062 |
T |
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| Q |
218 |
tcattgacaacctttttctccatacctttaacatacaccctaatgtggcaagggcatttatgtaa |
282 |
Q |
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| T |
8288063 |
tcattgacaacctttttctccatacctttaacatacaccccaatgtggcaggggcgtttatgtaa |
8288127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 378 - 471
Target Start/End: Original strand, 8288217 - 8288310
Alignment:
| Q |
378 |
tctctcttgcgactcccttccccttcaaccacattccctctcccaccaccatcatcgcctcatccctccctctgccctatcctctcttcatctc |
471 |
Q |
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| T |
8288217 |
tctctcttgcgactcccttccccttcgaccaaattccctctcccaccaccatcatcgcctcatccctccctctgcactaccctctcttcatctc |
8288310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 470
Target Start/End: Original strand, 1175332 - 1175382
Alignment:
| Q |
420 |
ccaccaccatcatcgcctcatccctccctctgccctatcctctcttcatct |
470 |
Q |
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| T |
1175332 |
ccaccaccattaacacctcatccttccctctgccctaccctctcttcatct |
1175382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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