View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0755_low_156 (Length: 251)

Name: NF0755_low_156
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0755_low_156
NF0755_low_156
[»] chr8 (4 HSPs)
chr8 (1-228)||(18016450-18016677)
chr8 (25-114)||(13368357-13368446)
chr8 (4-77)||(33330430-33330503)
chr8 (4-56)||(8304905-8304957)
[»] chr5 (3 HSPs)
chr5 (4-110)||(41592652-41592758)
chr5 (4-80)||(35415963-35416039)
chr5 (7-50)||(1728369-1728412)
[»] chr2 (5 HSPs)
chr2 (4-110)||(11652728-11652834)
chr2 (66-183)||(23794102-23794219)
chr2 (4-102)||(41647378-41647476)
chr2 (66-183)||(23764884-23765001)
chr2 (4-64)||(42183794-42183854)
[»] chr1 (3 HSPs)
chr1 (4-110)||(1797976-1798082)
chr1 (18-110)||(22157762-22157854)
chr1 (4-77)||(3394863-3394936)
[»] chr4 (3 HSPs)
chr4 (4-114)||(21141661-21141771)
chr4 (4-63)||(48782792-48782851)
chr4 (4-77)||(34240830-34240903)
[»] chr7 (5 HSPs)
chr7 (4-113)||(29802517-29802626)
chr7 (22-110)||(34328314-34328402)
chr7 (4-116)||(31663593-31663705)
chr7 (4-56)||(8752204-8752256)
chr7 (4-64)||(33680549-33680609)
[»] chr6 (2 HSPs)
chr6 (4-77)||(2013906-2013979)
chr6 (4-44)||(20565139-20565179)
[»] chr3 (1 HSPs)
chr3 (18-67)||(15206057-15206106)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 18016450 - 18016677
Alignment:
Q  1 atcatttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagtta 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18016450 atcatttggctagcttgtgtttgggtaatctggaaggaaaggaacaactgtgtcttcaaaaatgtggcttccgatccttacgtcctccttgacaaagtta 18016549  T
Q  101 agctgaattccttcctaggctgaaaacaaatcaggtttcgttcactcattgttatcatgacgggtggcgacatccgcttctttacatgagggtttacgtg 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  18016550 agttgaattccttcctaggctgaaaacaaatcaggtttcgttcacttattgttatcatgactggtggcgacatccgcttctttacatgagggtttatgtg 18016649  T
Q  201 caatccctttttggtttttgctttgatg 228  Q
    ||||||||||| | ||||||||||||||    
T  18016650 caatcccttttggctttttgctttgatg 18016677  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 13368357 - 13368446
Alignment:
Q  25 gtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaagctgaattccttc 114  Q
    ||||| ||||| |||||||||||||||||||| |||| || ||||||| ||| | || || ||||||| |||||||||||||||||||||    
T  13368357 gtaatttggaaggaaaggaacaaccgtgtctttaaaagtgcggcttcccatcttcacatcatccttgaaaaagttaagctgaattccttc 13368446  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 33330430 - 33330503
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatcc 77  Q
    |||||||| ||||||||||||||||| ||||||||||| || ||| |  | |||||||||||||| || |||||    
T  33330430 atttggcttgcttgtgtttgggtaatatggaaagaaagaaataactgcatattaaaaaatgtggcatctgatcc 33330503  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 8304957 - 8304905
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtctt 56  Q
    |||||||| ||||||||||||| ||| ||||| || || ||||||||||||||    
T  8304957 atttggcttgcttgtgtttgggcaatatggaaggagagaaacaaccgtgtctt 8304905  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 41592652 - 41592758
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaagc 103  Q
    |||||| | |||||||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||||| ||| | ||||||||| ||||||||||    
T  41592652 atttgggttgcttgtgtatgagtaatttggaaagaaagaaacaaccgtgtcttcaaaaatgtggcttccgatcattatgccctccttgataaagttaagc 41592751  T
Q  104 tgaattc 110  Q
    |||||||    
T  41592752 tgaattc 41592758  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 35415963 - 35416039
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatcctta 80  Q
    |||||||| |||||||| |||| ||| |  ||||||||||||||||| ||||| |||||||||||||||||| ||||    
T  35415963 atttggcttgcttgtgtgtgggcaatttaaaaagaaaggaacaaccgcgtcttcaaaaatgtggcttccgattctta 35416039  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 1728412 - 1728369
Alignment:
Q  7 tggctagcttgtgtttgggtaatctggaaagaaaggaacaaccg 50  Q
    |||||||| | |||||||||||| ||||||||||||||||||||    
T  1728412 tggctagcgtctgtttgggtaatatggaaagaaaggaacaaccg 1728369  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 11652728 - 11652834
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaagc 103  Q
    |||||||| |||||||| |||||||| ||||||||||||||  ||||||| ||||||||| |||||||||||||||  |  ||| |||| ||||||||||    
T  11652728 atttggcttgcttgtgtgtgggtaatttggaaagaaaggaatgaccgtgttttaaaaaatatggcttccgatccttttgctctcattgataaagttaagc 11652827  T
Q  104 tgaattc 110  Q
    | |||||    
T  11652828 ttaattc 11652834  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 23794219 - 23794102
Alignment:
Q  66 ggcttccgatccttacgtcctccttgacaaagttaagctgaattccttccta-ggctgaaaacaaatcaggtttcgttcactcattgttatcatgacggg 164  Q
    |||||||||| |||||| | ||||||||||||||||||| ||||||||  || || ||||||||||||||||| ||||| |  | | |||||||||| ||    
T  23794219 ggcttccgattcttacg-cttccttgacaaagttaagcttaattcctttttatggttgaaaacaaatcaggttacgttctcgtactattatcatgactgg 23794121  T
Q  165 tggcgacatccgcttcttt 183  Q
    || ||||| ||||||||||    
T  23794120 tgtcgacacccgcttcttt 23794102  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 41647476 - 41647378
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaag 102  Q
    |||||| | ||||||| ||||||||| ||||| |||||||||||||| ||||||||||||| | |||| |||||| ||   |||||||| |||||||||    
T  41647476 atttggttggcttgtgcttgggtaatatggaaggaaaggaacaaccgcgtcttaaaaaatgcgacttctgatcctcacaatctccttgaaaaagttaag 41647378  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 23765001 - 23764884
Alignment:
Q  66 ggcttccgatccttacgtcctccttgacaaagttaagctgaattccttccta-ggctgaaaacaaatcaggtttcgttcactcattgttatcatgacggg 164  Q
    |||||||||| |||||| | ||||||||||||||||||| ||||||||  || || ||||||||||||||||| ||||| |  | | |||||||||| ||    
T  23765001 ggcttccgattcttacg-cttccttgacaaagttaagcttaattcctttttatggttgaaaacaaatcaggttacgttctcgtactattatcatgactgg 23764903  T
Q  165 tggcgacatccgcttcttt 183  Q
    || ||||| | ||||||||    
T  23764902 tgtcgacacctgcttcttt 23764884  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 42183794 - 42183854
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatg 64  Q
    |||||||| ||||||| ||||||||| ||||| ||||||||||| |||||||| |||||||    
T  42183794 atttggcttgcttgtgcttgggtaatatggaaggaaaggaacaatcgtgtcttcaaaaatg 42183854  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 1798082 - 1797976
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaagc 103  Q
    |||||||| |||||||| |||||||| ||||||||||||||  || |||| || || |||||||||||| ||||||  |  ||| |||| ||||||||||    
T  1798082 atttggcttgcttgtgtgtgggtaatttggaaagaaaggaatgactgtgttttcaacaatgtggcttccaatccttttgctctcattgataaagttaagc 1797983  T
Q  104 tgaattc 110  Q
    |||||||    
T  1797982 tgaattc 1797976  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 22157854 - 22157762
Alignment:
Q  18 tgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaagctgaattc 110  Q
    ||||||||| || ||||| |||||||||||||||||||| || |||| |||||   |||||| ||| ||||| || |||||||| || |||||    
T  22157854 tgtttgggtgatttggaaggaaaggaacaaccgtgtcttcaacaatggggctttgaatccttccgtgctcctagaaaaagttaaacttaattc 22157762  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 3394863 - 3394936
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatcc 77  Q
    |||||||| ||||  ||||||||||| || |||||||| || |||||  |||| |||||||||| |||||||||    
T  3394863 atttggcttgctttagtttgggtaatttgaaaagaaagaaataaccgcatcttcaaaaatgtggtttccgatcc 3394936  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 21141661 - 21141771
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaagc 103  Q
    |||||||| | ||||||||||| ||| ||||| |||| ||||||||| ||||| ||||||||||   |||||||| ||  | || |||| ||||||||||    
T  21141661 atttggcttgattgtgtttgggcaatatggaaggaaaagaacaaccgcgtcttgaaaaatgtggtaaccgatcctcacaacatcattgaaaaagttaagc 21141760  T
Q  104 tgaattccttc 114  Q
    | |||||||||    
T  21141761 taaattccttc 21141771  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 48782851 - 48782792
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaat 63  Q
    |||||| | ||||||| |||| |||| ||||| |||||||||||||||||||| ||||||    
T  48782851 atttggtttgcttgtgcttggataatatggaaggaaaggaacaaccgtgtcttcaaaaat 48782792  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 34240903 - 34240830
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatcc 77  Q
    ||||||||||||||||| |||| ||| |||||||||  |||  ||| |||||| | ||| ||||||||||||||    
T  34240903 atttggctagcttgtgtgtgggcaatttggaaagaacagaatgaccatgtcttcacaaacgtggcttccgatcc 34240830  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 29802517 - 29802626
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaagc 103  Q
    |||||||| ||||||  ||||||||| ||||| ||||||||||||||||||||| |||||  | |  ||||||||||    ||| |||| |||||||||     
T  29802517 atttggcttgcttgtacttgggtaatatggaaggaaaggaacaaccgtgtcttacaaaatacgacaaccgatccttatactctcattgataaagttaagt 29802616  T
Q  104 tgaattcctt 113  Q
    ||||||||||    
T  29802617 tgaattcctt 29802626  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 34328402 - 34328314
Alignment:
Q  22 tgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaagctgaattc 110  Q
    |||||||| || ||||||||||||||||| |||||  ||||   || |||| ||||||| | ||||||||| |||||||||||||||||    
T  34328402 tgggtaatttgaaaagaaaggaacaaccgcgtcttctaaaaaaaggtttccaatccttatgccctccttgataaagttaagctgaattc 34328314  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 31663705 - 31663593
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatccttacgtcctccttgacaaagttaagc 103  Q
    |||||||| |||||||| ||||||||||||||||| |||||  ||||| | || ||  | |||||||| ||||||   |  ||| |||| ||||||||||    
T  31663705 atttggcttgcttgtgtgtgggtaatctggaaagagaggaatgaccgtattttcaactacgtggcttctgatcctgttgctctcattgataaagttaagc 31663606  T
Q  104 tgaattccttcct 116  Q
    ||||||| |||||    
T  31663605 tgaattcgttcct 31663593  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 8752204 - 8752256
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtctt 56  Q
    |||||||| ||||||||||||| ||| |||||||| || |||||||| |||||    
T  8752204 atttggcttgcttgtgtttgggcaatttggaaagagagaaacaaccgagtctt 8752256  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 33680549 - 33680609
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatg 64  Q
    |||||||| |||||||| ||||| || || |||||| | ||||||||| ||||||||||||    
T  33680549 atttggcttgcttgtgtgtgggttatatgaaaagaacgtaacaaccgtatcttaaaaaatg 33680609  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 2013906 - 2013979
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtggcttccgatcc 77  Q
    |||||||| | ||||||||||||||| ||||||||||| ||| | |   |||| |||||||||||||| |||||    
T  2013906 atttggctcgtttgtgtttgggtaatatggaaagaaagaaacgatcacatctttaaaaatgtggcttcagatcc 2013979  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 20565179 - 20565139
Alignment:
Q  4 atttggctagcttgtgtttgggtaatctggaaagaaaggaa 44  Q
    |||||||||||||||||||||||||| ||||| || |||||    
T  20565179 atttggctagcttgtgtttgggtaatttggaaggagaggaa 20565139  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 15206057 - 15206106
Alignment:
Q  18 tgtttgggtaatctggaaagaaaggaacaaccgtgtcttaaaaaatgtgg 67  Q
    ||||||||| || ||||| |||||||||||||||||||| || |||||||    
T  15206057 tgtttgggtgatttggaaggaaaggaacaaccgtgtcttcaacaatgtgg 15206106  T

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