View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0755_low_16 (Length: 476)
Name: NF0755_low_16
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 22 - 279
Target Start/End: Original strand, 8287864 - 8288127
Alignment:
| Q |
22 |
catcatcattaggaaacagaaacagaaagctcaggtgggaaagtgaaatcagagttgagaaagagagatgacagagaacgcatatataaggtttgagagg |
121 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8287864 |
catcatcattaggaaacaaaaacagaaagctcaggtgggaaagtgaaatcagagttgagaaagagagatgacagagaacgcatatataaggtttgagagg |
8287963 |
T |
|
| Q |
122 |
agagataa-nnnnnnnnnnnnnaattcaaatttccacatgagggtgtatattataagggtctataactaattatccataa------aaaagagtaatgtt |
214 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8287964 |
agagataattttttatttttttaattcaaatttccacatgagggtgtatattataa-ggtctataactaattatccataaaaaaataaaagagtaatgtt |
8288062 |
T |
|
| Q |
215 |
tcattgacaacctttttctccatacctttaacatacaccctaatgtggcaagggcatttatgtaa |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
8288063 |
tcattgacaacctttttctccatacctttaacatacaccccaatgtggcaggggcgtttatgtaa |
8288127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 375 - 468
Target Start/End: Original strand, 8288217 - 8288310
Alignment:
| Q |
375 |
tctctcttgcgactcccttccccttcaaccacattccctctcccaccaccatcatcgcctcatccctccctctgccctatcctctcttcatctc |
468 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
8288217 |
tctctcttgcgactcccttccccttcgaccaaattccctctcccaccaccatcatcgcctcatccctccctctgcactaccctctcttcatctc |
8288310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 467
Target Start/End: Original strand, 1175332 - 1175382
Alignment:
| Q |
417 |
ccaccaccatcatcgcctcatccctccctctgccctatcctctcttcatct |
467 |
Q |
| |
|
|||||||||| | | |||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
1175332 |
ccaccaccattaacacctcatccttccctctgccctaccctctcttcatct |
1175382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5555 times since January 2019
Visitors: 4857