View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0755_low_178 (Length: 225)
Name: NF0755_low_178
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_178 |
 | |
|
| [»] scaffold0510 (2 HSPs) |
| | |
|
| [»] scaffold0053 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8190047 - 8189827
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
8190047 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgagccaccccct |
8189948 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189947 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
8189848 |
T |
|
| Q |
201 |
gctgcactaaatattgagact |
221 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
8189847 |
gctgcactaaatactgagact |
8189827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14290779 - 14290999
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
14290779 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgagccaccccct |
14290878 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14290879 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
14290978 |
T |
|
| Q |
201 |
gctgcactaaatattgagact |
221 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
14290979 |
gctgcactaaatactgagact |
14290999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 48350684 - 48350479
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
48350684 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgatccaccccct |
48350585 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
48350584 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgataggcctctggtgtcatgaattgtgacatcacctccggtgggtacccagcctgct |
48350485 |
T |
|
| Q |
201 |
gctgca |
206 |
Q |
| |
|
|||||| |
|
|
| T |
48350484 |
gctgca |
48350479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 1946226 - 1946112
Alignment:
| Q |
92 |
ccaccccctccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtacc |
191 |
Q |
| |
|
||||||||||| |||||| ||||| || ||||||||||| |||| |||||| ||||| ||||||||| |||| ||| |||||||||||||||| |
|
|
| T |
1946226 |
ccaccccctccataaggacctggcatgtcctcaggccaattcacataagcctggaaagctggaggtgtcatgtattgccccataacctccggagggtacc |
1946127 |
T |
|
| Q |
192 |
ctgcttgctgctgca |
206 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
1946126 |
ctgcttgttgctgca |
1946112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 15944222 - 15944336
Alignment:
| Q |
92 |
ccaccccctccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtacc |
191 |
Q |
| |
|
||||||||||| |||||| ||||| || ||||||||||| |||| |||||| ||||| ||||||||||| || ||| |||||| ||||||||| |
|
|
| T |
15944222 |
ccaccccctccataaggacctggcatgtcctcaggccaattgacataagcctggaaagctggaggtgtcatgaactgccccataacctccagagggtacc |
15944321 |
T |
|
| Q |
192 |
ctgcttgctgctgca |
206 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
15944322 |
ctgcttgttgctgca |
15944336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4715692 - 4715472
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
4715692 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgagccaccccct |
4715593 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4715592 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
4715493 |
T |
|
| Q |
201 |
gctgcactaaatattgagact |
221 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
4715492 |
gctgcactaaatactgagact |
4715472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4710082 - 4709862
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
4710082 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcatcagaaagcgtcccgaacgatgagccaccccct |
4709983 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4709982 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcttgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
4709883 |
T |
|
| Q |
201 |
gctgcactaaatattgagact |
221 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
4709882 |
gctgcactaaatactgagact |
4709862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4735498 - 4735278
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
4735498 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcatcagaaagcgtcccgaacgatgagccaccccct |
4735399 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4735398 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcttgaaaagcctttggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
4735299 |
T |
|
| Q |
201 |
gctgcactaaatattgagact |
221 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
4735298 |
tctgcactaaatactgagact |
4735278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7066838 - 7066618
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
7066838 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgagccaccccct |
7066739 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||| |||| |
|
|
| T |
7066738 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcttgaaaggcctctggtgtcataaattgtgacatcacctccggagggtaatctgcctgct |
7066639 |
T |
|
| Q |
201 |
gctgcactaaatattgagact |
221 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
7066638 |
gctgcactaaatactgagact |
7066618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4023791 - 4023571
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
4023791 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgatccaccccct |
4023692 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||| |||| |
|
|
| T |
4023691 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcttgaaaggcctctggtgtcataaattgtgacatcacctccggagggtaatctgcctgct |
4023592 |
T |
|
| Q |
201 |
gctgcactaaatattgagact |
221 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
4023591 |
gctgcactaaatactgagact |
4023571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 34651869 - 34652074
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
34651869 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcagtatatcgtcagaaagcgtcccgaacgatgagccaccccct |
34651968 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
34651969 |
ccgtaaggatcaggcctgccctcaggccaagaaacatgagcctgataggcttctggtgtcatgaattgtgacatcacctccggtgggtacccagcctgct |
34652068 |
T |
|
| Q |
201 |
gctgca |
206 |
Q |
| |
|
|||||| |
|
|
| T |
34652069 |
gctgca |
34652074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34838406 - 34838186
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
34838406 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgatccaccccct |
34838307 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34838306 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcttgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
34838207 |
T |
|
| Q |
201 |
gctgcactaaatattgagact |
221 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
34838206 |
gctgcactaaatactgagact |
34838186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 2160668 - 2160885
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
2160668 |
tgaaccaccagttgcacttgggactctatctggatcgtctctgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgatccaccccct |
2160767 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2160768 |
tcgtaacgatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
2160867 |
T |
|
| Q |
201 |
gctgcactaaatattgag |
218 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
2160868 |
gctgcactaaatactgag |
2160885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 45018851 - 45019071
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
45018851 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgagccaccccct |
45018950 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||| |||| |
|
|
| T |
45018951 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcttgaaaggcctctggtgtcataaattgtgacatcacctccggagggtattctgcctgct |
45019050 |
T |
|
| Q |
201 |
gctgcactaaatattgagact |
221 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
45019051 |
gctgcactaaatactgagact |
45019071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 39056879 - 39056674
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
39056879 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgatccaccccct |
39056780 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
39056779 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcttgaaaagcctctggtgtcatgaattgtgacatcacctccggtgggtacccagcctgct |
39056680 |
T |
|
| Q |
201 |
gctgca |
206 |
Q |
| |
|
|||||| |
|
|
| T |
39056679 |
gctgca |
39056674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 41294133 - 41294338
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
41294133 |
tgaaccaccagttgcacttgggactctgtctggatcgtctttgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgatccaccccct |
41294232 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
41294233 |
ccgtaaggatctggcctgcccttaggccaagaaacatgagcctgataggcctctggtgtcataaattgtgacatcacctctggtgggtaccctgcatgct |
41294332 |
T |
|
| Q |
201 |
gctgca |
206 |
Q |
| |
|
|||||| |
|
|
| T |
41294333 |
gctgca |
41294338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41302691 - 41302473
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||||||||| | ||| ||||||||||||||||| |||||||| | | | |||||||| ||||||| | |
|
|
| T |
41302691 |
tgaaccgccagttgcacttggaactctatctggatcgtctctgttagagtctcccatcaatatatcatcagaaagcgtctcaaacgatgatccacccctt |
41302592 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
|| |||| |||| | || |||||||||||||||| || |||||| | |||||||||||||| |||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
41302591 |
ccataagcatctagtcttccctcaggccaagaaaaat--gcctgataggcctctggtgtcataaattgtgacatcacctccggtgggtaccctgcctgct |
41302494 |
T |
|
| Q |
201 |
gctgcactaaatattgagact |
221 |
Q |
| |
|
|||||| ||||| ||||||| |
|
|
| T |
41302493 |
gctgcatcaaatactgagact |
41302473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 35087065 - 35087282
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
||||||| |||||||||| | |||||||||||||| ||| | |||||||||||||||||||| || || ||| | | ||| || ||||| ||||||||| |
|
|
| T |
35087065 |
tgaaccatcagttgcactagaaactctgtctggatcatctttgtcagaatctcccatcaatatgtcatctgaagg-gtcccaaatgatgatccaccccct |
35087163 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
|| |||| |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| | ||||||| ||||||||||||||||||||| | |
|
|
| T |
35087164 |
ccataagcatctggcctgccctcaggccaagagacatgagcctgataggcctctggtgtcatgaactaggacatcaactccggagggtaccctgcttgtt |
35087263 |
T |
|
| Q |
201 |
gctgcactaaatattgaga |
219 |
Q |
| |
|
|||||| ||||| ||||| |
|
|
| T |
35087264 |
gctgcatcaaatactgaga |
35087282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 8010522 - 8010317
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
8010522 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgatccaccccct |
8010423 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
8010422 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgataggcctctggtgtcatgaattgtgacatcacctccggtgggtacccagcctgct |
8010323 |
T |
|
| Q |
201 |
gctgca |
206 |
Q |
| |
|
|||||| |
|
|
| T |
8010322 |
gctgca |
8010317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 2962966 - 2963171
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
2962966 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgatccaccccct |
2963065 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
2963066 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgataggcctctggtgtcatgaattgtgacatcacctccggtgggtacccagcctgct |
2963165 |
T |
|
| Q |
201 |
gctgca |
206 |
Q |
| |
|
|||||| |
|
|
| T |
2963166 |
gctgca |
2963171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 29976980 - 29977185
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
29976980 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgatccaccccct |
29977079 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
29977080 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgataggcctctggtgtcatgaattgtgacatcacctccggtgggtacccagcctgct |
29977179 |
T |
|
| Q |
201 |
gctgca |
206 |
Q |
| |
|
|||||| |
|
|
| T |
29977180 |
gctgca |
29977185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 30019662 - 30019457
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
30019662 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcaatatatcgtcagaaagcgtcccgaacgatgatccaccccct |
30019563 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
30019562 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgataggcctctggtgtcatgaattgtgacatcacctccggtgggtacccagcctgct |
30019463 |
T |
|
| Q |
201 |
gctgca |
206 |
Q |
| |
|
|||||| |
|
|
| T |
30019462 |
gctgca |
30019457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 9574157 - 9573952
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9574157 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctgtcagaatctcccatcagtatatcgtcagaaagcatcccgaacgatgagccaccccct |
9574058 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| || |||||||| || |||| |
|
|
| T |
9574057 |
ccgtaaggatcaggcctgccctcaggccaagaaacatgagcctgataggcctctggtgtcatgaattgtgacatcacctctggtgggtacccagcctgct |
9573958 |
T |
|
| Q |
201 |
gctgca |
206 |
Q |
| |
|
|||||| |
|
|
| T |
9573957 |
gctgca |
9573952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 221
Target Start/End: Original strand, 8049822 - 8050007
Alignment:
| Q |
34 |
atcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccctccgtaaggatctggcctgccctcaggccaagaa |
133 |
Q |
| |
|
|||||||| ||||| ||| |||||||||| | |||||||| | ||| |||||||| |||||| ||| |||| |||| ||||||||||||||||||| |
|
|
| T |
8049822 |
atcgtctccgtcagagtcttccatcaatatgttatcagaaagcgtcccaaacgatgattcacccc-tccataagcatctagcctgccctcaggccaagag |
8049920 |
T |
|
| Q |
134 |
acatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgctgctgcactaaatattgagact |
221 |
Q |
| |
|
|||| || |||| | |||||||||||||| || || |||||||||||||| |||||||||| |||||| ||| ||||| ||||||| |
|
|
| T |
8049921 |
acataagtctgataggcctctggtgtcataaactgggacatcacctccgg-gggtaccctgtctgctgccgcatcaaatactgagact |
8050007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: scaffold0510
Description:
Target: scaffold0510; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6052 - 5834
Alignment:
| Q |
1 |
tgaaccaccagttgcacttgggactctgtctggatcgtctctttcagaatctcccatcaatatatcgtcagaaagtgccccgaacgatgagccaccccct |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||||||||||| | ||| ||||||||||||||||| |||||||| | | | |||||||| ||||||| | |
|
|
| T |
6052 |
tgaaccgccagttgcacttggaactctatctggatcgtctctgttagagtctcccatcaatatatcatcagaaagcgtctcaaacgatgatccacccctt |
5953 |
T |
|
| Q |
101 |
ccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgct |
200 |
Q |
| |
|
|| |||| |||| | || |||||||||||||||| || |||||| | |||||||||||||| |||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
5952 |
ccataagcatctagtcttccctcaggccaagaaaaat--gcctgataggcctctggtgtcataaattgtgacatcacctccggtgggtaccctgcctgct |
5855 |
T |
|
| Q |
201 |
gctgcactaaatattgagact |
221 |
Q |
| |
|
|||||| ||||| ||||||| |
|
|
| T |
5854 |
gctgcatcaaatactgagact |
5834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0510; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 12370 - 12282
Alignment:
| Q |
118 |
gccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgcttgctgctgca |
206 |
Q |
| |
|
||||| |||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
12370 |
gcccttaggccaagaaacatgagcctgataggcctctggtgtcataaattgtgacatcacctctggtgggtaccctgcatgctgctgca |
12282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 52854 - 52968
Alignment:
| Q |
92 |
ccaccccctccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtacc |
191 |
Q |
| |
|
||||||||||| |||||| ||||| || ||||||||||| |||| |||||| ||||| ||||||||||| || ||| |||| |||| | |||| |
|
|
| T |
52854 |
ccaccccctccataaggacctggcatgtcctcaggccaattcacataagcctggaaagctggaggtgtcatgaactgccccataacctacggaagatacc |
52953 |
T |
|
| Q |
192 |
ctgcttgctgctgca |
206 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
52954 |
ctgcttgctgctgca |
52968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 206
Target Start/End: Complemental strand, 6188 - 6078
Alignment:
| Q |
96 |
cccctccgtaaggatctggcctgccctcaggccaagaaacatgagcctgaaaagcctctggtgtcatgaattgtgacatcacctccggagggtaccctgc |
195 |
Q |
| |
|
||||||| |||||| ||||| || ||||||||||| |||| || ||||||||| ||| ||||||| || ||| |||||||||||||||||||| |
|
|
| T |
6188 |
cccctccataaggacctggcatgtcctcaggccaatttacataagtctgaaaagcgggaggtctcatgaactgccccataacctccggagggtaccctgc |
6089 |
T |
|
| Q |
196 |
ttgctgctgca |
206 |
Q |
| |
|
|||||| |||| |
|
|
| T |
6088 |
ttgctgttgca |
6078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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