View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_185 (Length: 211)
Name: NF0755_low_185
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_185 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 53491703 - 53491493
Alignment:
| Q |
1 |
agcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491703 |
agcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtg |
53491604 |
T |
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| Q |
101 |
atggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttgatactcaag |
200 |
Q |
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| T |
53491603 |
atggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttgatactcaag |
53491504 |
T |
|
| Q |
201 |
gaatctatgac |
211 |
Q |
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||||||||||| |
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| T |
53491503 |
gaatctatgac |
53491493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 53499296 - 53499086
Alignment:
| Q |
1 |
agcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||| |
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| T |
53499296 |
agcttttaatgtctagagtatacatgaatggaagaactccttttatgtacgattgcatttatattttagtccgcttatttaacagattggagcaatggtg |
53499197 |
T |
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| Q |
101 |
atggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgccttacaaagatgttgatactcaag |
200 |
Q |
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| T |
53499196 |
atggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaactcaagtcattgtgattccagtgccttacaaagatgttgatactcaag |
53499097 |
T |
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| Q |
201 |
gaatctatgac |
211 |
Q |
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| T |
53499096 |
gaatctatgac |
53499086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 16070303 - 16070172
Alignment:
| Q |
80 |
taacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcctt |
179 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgcctt |
16070204 |
T |
|
| Q |
180 |
acaaagatgttgatactcaaggaatctatgac |
211 |
Q |
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| T |
16070203 |
acaaaaacgttgattgtgaaggaatcaatgac |
16070172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 45355140 - 45355274
Alignment:
| Q |
72 |
cgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattcc |
171 |
Q |
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|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |
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| T |
45355140 |
cgctttttcaacagattggggtgatggtgatggttcatggtgatgacaagggattggtgctgccacctaaagtagcatcagttcaagtcattgtgattcc |
45355239 |
T |
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| Q |
172 |
agtgccttacaaagatgttgatactcaaggaatct |
206 |
Q |
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| T |
45355240 |
tgtgccttacaaagatgctgatactcaaggaatct |
45355274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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