View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_189 (Length: 202)
Name: NF0755_low_189
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_189 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: scaffold0504 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 7288 - 7399
Alignment:
| Q |
3 |
actcatcagagaaactcaaccatcacc------accaccaccgcagcatgtcatctcaggttaactccgatatcccaccctcctccgctcccgtcgtcat |
96 |
Q |
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| T |
7288 |
actcatcagcgaaactcaaccatcaccaccaccaccaccaccgcaacatgtcatctcaggttaactccgatatcccaccctcctccactcccgtcgtcat |
7387 |
T |
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| Q |
97 |
gctctctgctcc |
108 |
Q |
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|||||||||||| |
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| T |
7388 |
gctctctgctcc |
7399 |
T |
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Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 12027140 - 12027053
Alignment:
| Q |
21 |
accatcaccaccaccaccgcagcatgtcatctcaggttaactccgatatcccaccctcctccgctcccgtcgtcatgctctctgctcc |
108 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12027140 |
accaccaccaccaccaccgcaacatgtcatctcaggttaactccgatatcccaccctcctccactcccgtcgtcatgctctctgctcc |
12027053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 12027157 - 12027129
Alignment:
| Q |
10 |
agagaaactcaaccatcaccaccaccacc |
38 |
Q |
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| T |
12027157 |
agagaaactcaaccatcaccaccaccacc |
12027129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 18188581 - 18188641
Alignment:
| Q |
48 |
catctcaggttaactccgatatcccaccctcctccgctcccgtcgtcatgctctctgctcc |
108 |
Q |
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||||||||| |||||| || |||||| ||||||| ||| |||||||||||||||| ||||| |
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| T |
18188581 |
catctcaggctaactctgacatcccagcctcctctgcttccgtcgtcatgctctccgctcc |
18188641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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