View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_21 (Length: 457)
Name: NF0755_low_21
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 12867000 - 12867161
Alignment:
| Q |
24 |
tcatcacggcgaggtaaaaggccaaaatcttcatcaccagattctggagtttctaagaagatgaaaaataatccagaggaacaaaaagaatctaagcatg |
123 |
Q |
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| T |
12867000 |
tcatcacggcgaggtaaaaggccaaaatcttcatcaccgtcttctggagtttctaagaagatgaaaaacaatccagaagaacaaaaagaatctaagcatg |
12867099 |
T |
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| Q |
124 |
agaagagaaaagtccaagcacatgcaagatttcgtaattttaaggatgtggacaatggttgg |
185 |
Q |
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| T |
12867100 |
agaagagaaaagtccaagcacatgcaagatttcataattttaaggatgtggacaatggttgg |
12867161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 309 - 429
Target Start/End: Original strand, 12867290 - 12867408
Alignment:
| Q |
309 |
tagtggtgatgatcttaaggagcgaagccaagttttgtatgataaagtcaagaacaagttttattctgataagaacttcttcgtgtgtgtgatccaaatg |
408 |
Q |
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| T |
12867290 |
tagttgtgatgatcttaaggagcgaagccaagttttgtatgataaagtgaagaacaagtttcattctgataagaacttcttc--gtgtgtgatccaaatg |
12867387 |
T |
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| Q |
409 |
acatacattaaaagagatctt |
429 |
Q |
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| T |
12867388 |
acatacattaaaagagatctt |
12867408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 15134284 - 15134395
Alignment:
| Q |
72 |
gtttctaagaagatgaaaaataatccagaggaacaaaaagaatctaagcatgagaagagaaaagtccaagcacatgcaagatttcgtaattttaaggatg |
171 |
Q |
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| T |
15134284 |
gtttgtaagaagatgaaaatcaacccagaggaacaaaaagaatctaagcatgagaagaaaatattccaatctcaagcaaaatttcataattttaaggata |
15134383 |
T |
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| Q |
172 |
tggacaatggtt |
183 |
Q |
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| T |
15134384 |
tgaacaatggtt |
15134395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 49742916 - 49743020
Alignment:
| Q |
81 |
aagatgaaaaataatccagaggaacaaaaagaatctaagcatgagaagagaaaagtccaagcacatgcaagatttcgtaattttaaggatgtggacaatg |
180 |
Q |
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|||||||||| ||| || | |||||||||||| ||||||||||||||||||||||||||| ||| | ||| |||| ||| || |||||| |||||||| |
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| T |
49742916 |
aagatgaaaatcaattcaaaagaacaaaaagaacctaagcatgagaagagaaaagtccaagaacaaggaaggtttcttaacttcaaggatacggacaatg |
49743015 |
T |
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| Q |
181 |
gttgg |
185 |
Q |
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||||| |
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| T |
49743016 |
gttgg |
49743020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 49743134 - 49743250
Alignment:
| Q |
303 |
aggaattagtggtgatgatcttaaggagcgaagccaagttttgtatgataaagtcaagaacaagttttattctgataagaacttcttcgtgtgtgtgatc |
402 |
Q |
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||||| |||| ||||||||||||||||| ||||| |||||||||| || ||||| ||||| || | |||||| | | |||||| ||||| ||||| |
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| T |
49743134 |
aggaagtagttgtgatgatcttaaggagagaagcaaagttttgtacgacaaagtgaagaattttttccacgctgatatggatttcttcatgtgtatgatc |
49743233 |
T |
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| Q |
403 |
caaatgacatacattaa |
419 |
Q |
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| T |
49743234 |
caaaagacatacattaa |
49743250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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