View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_23 (Length: 450)
Name: NF0755_low_23
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 96 - 442
Target Start/End: Complemental strand, 47679250 - 47678904
Alignment:
| Q |
96 |
ctctggccacatacaatttctaaaatgattacaccaaaactaaacacatctgacttaactgagaattgtccatgtctaatgtactccggagccatgtatc |
195 |
Q |
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| T |
47679250 |
ctctggccacatacaatttctaaaattattacaccaaaactaaacacatctgacttaactgagaattgtccatgtctaatgtactccggagccatgtatc |
47679151 |
T |
|
| Q |
196 |
cactgtatcacaaaataattatgctcaatcattagatatgtacgacaatcgatcttcgatgaccgatcattttcattttccacgttttttgttataaaat |
295 |
Q |
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| T |
47679150 |
cactgtatcacaaaacaattatgctcaatcattagatatgaacgacaatcgatcttcgatgaccaatcattttgattttccacgttttttgttataaaat |
47679051 |
T |
|
| Q |
296 |
tcttatttggaaatgatgaatatctcattagttcaagcatttccttaatacttacactgttccaacaacggtctttgtcatgccatgagtttgattggca |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47679050 |
tcttatttggaaatgatgaatatctcattagttcaagcatttccttaatacttacactgttccaacaacggtctttgtcatgccatgagtttgattggca |
47678951 |
T |
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| Q |
396 |
tcaaacaatcttgcgattccaaagtctgtaatttttgggttcatctc |
442 |
Q |
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| T |
47678950 |
tcaaacaatcttgcgattccaaaatctgtaatttttgggttcatctc |
47678904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 100 - 216
Target Start/End: Complemental strand, 47690573 - 47690457
Alignment:
| Q |
100 |
ggccacatacaatttctaaaatgattacaccaaaactaaacacatctgacttaactgagaattgtccatgtctaatgtactccggagccatgtatccact |
199 |
Q |
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| T |
47690573 |
ggccacaaacaatttctaaaataattacaccaaaactgaacacatctgacttgatcgaaaattctccatgtttaatgtactctggagccatgtatccgct |
47690474 |
T |
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| Q |
200 |
gtatcacaaaataatta |
216 |
Q |
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|||| ||||| ||||| |
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| T |
47690473 |
gtatgtcaaaacaatta |
47690457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 324 - 438
Target Start/End: Complemental strand, 47690306 - 47690192
Alignment:
| Q |
324 |
tagttcaagcatttccttaatacttacactgttccaacaacggtctttgtcatgccatgagtttgattggcatcaaacaatcttgcgattccaaagtctg |
423 |
Q |
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|||||| |||||||| | | ||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| || ||||| |||| |
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| T |
47690306 |
tagttctagcatttcttaagtacttactaagttccaataacggtgcttgtcatgccatgagtttgattggcatcaaacaattttgcaatgccaaaatctg |
47690207 |
T |
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| Q |
424 |
taatttttgggttca |
438 |
Q |
| |
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|||||||||| |||| |
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| T |
47690206 |
taatttttggattca |
47690192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 6525607 - 6525563
Alignment:
| Q |
125 |
tacaccaaaactaaacacatctgacttaactgagaattgtccatg |
169 |
Q |
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| T |
6525607 |
tacaccaaaactaaatacatctgacttcactgaaaattgtccatg |
6525563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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