View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0755_low_28 (Length: 430)
Name: NF0755_low_28
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_28 |
 | |
|
| [»] scaffold0145 (1 HSPs) |
| | |
|
| [»] scaffold1001 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0145 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: scaffold0145
Description:
Target: scaffold0145; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 80 - 410
Target Start/End: Complemental strand, 12785 - 12455
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12785 |
gtgagatgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagcggat |
12686 |
T |
|
| Q |
180 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgag |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12685 |
gataaagagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgag |
12586 |
T |
|
| Q |
280 |
tttgtattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaatttatgacgatgatgagagtgatgacattta |
379 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12585 |
tttatattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtgtcgatggttaatttatgacgatgatgagagtgatgacattta |
12486 |
T |
|
| Q |
380 |
tctaagatgatgatgggagtggtgatgatgt |
410 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||| |
|
|
| T |
12485 |
tctatgattatgatgggagtggtgctgatgt |
12455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 80 - 410
Target Start/End: Original strand, 16284932 - 16285262
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
16284932 |
gtgagatgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagtggat |
16285031 |
T |
|
| Q |
180 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgag |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16285032 |
gataaagagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgag |
16285131 |
T |
|
| Q |
280 |
tttgtattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaatttatgacgatgatgagagtgatgacattta |
379 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16285132 |
tttatattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtgtcgatggttaatttatgacgatgatgagagtgatgacattta |
16285231 |
T |
|
| Q |
380 |
tctaagatgatgatgggagtggtgatgatgt |
410 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| |
|
|
| T |
16285232 |
tctatgatgatgatgggagtggtgctgatgt |
16285262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 156 - 406
Target Start/End: Original strand, 18231449 - 18231697
Alignment:
| Q |
156 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
255 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
18231449 |
gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattaatattatatatatgtaaagaa |
18231546 |
T |
|
| Q |
256 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaatttatga |
355 |
Q |
| |
|
||||||||||| | ||||||||| || ||||||||||||||||||||||| |||||||||||| |||| ||||||| | | | ||||||||| ||| | |
|
|
| T |
18231547 |
attactacgatagaaaatgatgatgttatattataataatgatgagaatgacgatgtctatgttattgtgatgatgataatcttgatggttaatctataa |
18231646 |
T |
|
| Q |
356 |
cgatgatgagagtgatgacatttatctaagatgatgatgggagtggtgatg |
406 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
18231647 |
cgatgatgagagtgatgatttttatctatgatgatgattagagtggtgatg |
18231697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 331
Target Start/End: Complemental strand, 11556070 - 11555897
Alignment:
| Q |
156 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
255 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||||||||| || ||| ||| || | ||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
11556070 |
gataaggtggtgatataaatggttgatagagagtaatgatgatgaatcc-ata-ctgtcacaaagagtgatgacgattaatattatatatatgtaaagaa |
11555973 |
T |
|
| Q |
256 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtctatgttgttgtcatgatg |
331 |
Q |
| |
|
||||||||||| ||||||| ||| || ||||||||||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
11555972 |
attactacgataggaaatgttgatgttatattataataatgatgagaatgacgatgtttatgttgttgtgatgatg |
11555897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 186 - 299
Target Start/End: Original strand, 11098355 - 11098468
Alignment:
| Q |
186 |
gagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgta |
285 |
Q |
| |
|
||||||||||| |||||||||||| | ||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |||| || || |
|
|
| T |
11098355 |
gagtaatgatgaggagtcctataattgtaatggagagtgatgacgattaatattatatatatgtaaagaaattactattgtgggaaataatgatgttata |
11098454 |
T |
|
| Q |
286 |
ttataataatgatg |
299 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11098455 |
ttataataatgatg |
11098468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 11098291 - 11098356
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtgga |
145 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||| | || || ||||||||| ||||||||||| |
|
|
| T |
11098291 |
gtgagatgaataataaagtaaaataaagggatgttgacgtataaggagtcacgcataaggtgtgga |
11098356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 80 - 410
Target Start/End: Original strand, 10641216 - 10641546
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||| || ||||||||||||| ||| ||| ||||| ||| || |||||||||||||||||||||||| |
|
|
| T |
10641216 |
gtgagatgaataataaaataaagtaaatggatgttggcgtagaatgagtcacacgtgaggcgtggattaatgaagagataaggtggtgatataagcggat |
10641315 |
T |
|
| Q |
180 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgag |
279 |
Q |
| |
|
|||| |||||||||| | |||||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10641316 |
gatagagagtaatgacgaggagtcctataactgtgacagagagcgatgacgattaatattatatatatgtaaagaaattactacgatgggaaattatgag |
10641415 |
T |
|
| Q |
280 |
tttgtattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaatttatgacgatgatgagagtgatgacattta |
379 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
10641416 |
gttatattataataatgatgagaatgatgatgtctatgttgttgtgatgatgagagtgtcaatggttaatttatgacaatgatgaaggtgatgatattta |
10641515 |
T |
|
| Q |
380 |
tctaagatgatgatgggagtggtgatgatgt |
410 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||| |
|
|
| T |
10641516 |
tctatgatgctgatgagagtggtgatgatgt |
10641546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 81 - 314
Target Start/End: Complemental strand, 14970294 - 14970059
Alignment:
| Q |
81 |
tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg |
180 |
Q |
| |
|
||||| ||||| |||||||||||||| | ||||| ||||||||||||| ||||| ||||||| ||| || ||||| |||||||||||| ||||| |
|
|
| T |
14970294 |
tgagaagaataataaaataaaataaaggaatgttgatgtagaatgagtcactcgtaaagtgtggattaatgaagagataaagtggtgatataaatggatg |
14970195 |
T |
|
| Q |
181 |
ataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatat--atatgtaaagaaattactacgatgggaaatgatga |
278 |
Q |
| |
|
||| |||||||||||| ||||||||| |||| | ||| ||| | |||||| ||||||||||| |||| || ||||||||| |||||||||||||||| |
|
|
| T |
14970194 |
atagagagtaatgatgaggagtcctacaactgtgacaaagaatgatgacggttaatattatatatatatttatagaaattaccgcgatgggaaatgatga |
14970095 |
T |
|
| Q |
279 |
gtttgtattataataatgatgagaatgatgatgtct |
314 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||||| |
|
|
| T |
14970094 |
tgttatattataataacaatgagaatgacgatgtct |
14970059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 366
Target Start/End: Original strand, 10906699 - 10906907
Alignment:
| Q |
158 |
taaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat |
257 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||||||| | ||| |||||||||| ||||||||| | | | ||||||||| ||||||| || | || |
|
|
| T |
10906699 |
taaggtggtgatataaacggttgacaaagagtaatgacgaggaatcctataactgcgacagagagtgaagggggttaatattatgtatatgtcaacatat |
10906798 |
T |
|
| Q |
258 |
tactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaatttatgacg |
357 |
Q |
| |
|
| || |||| |||||||||| || ||||||||||||||||||||||| |||||||| |||| | ||||||||| | | |||||||| |||||| | |
|
|
| T |
10906799 |
aaataggatgtgaaatgatgatgttatattataataatgatgagaatgacgatgtctaaattgtcattatgatgagaatgttgatggttaaattatgatg |
10906898 |
T |
|
| Q |
358 |
atgatgaga |
366 |
Q |
| |
|
|| |||||| |
|
|
| T |
10906899 |
ataatgaga |
10906907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 410
Target Start/End: Complemental strand, 14966078 - 14965977
Alignment:
| Q |
309 |
atgtctatgttgttgtcatgatgagagtttcaatggttaatttatgacgatgatgagagtgatgacatttatctaagatgatgatgggagtggtgatgat |
408 |
Q |
| |
|
||||||||| |||||| || ||||||| | |||||||||||||||| |||||||||||||||| ||||||| |||||||||| |||||| |||||| |
|
|
| T |
14966078 |
atgtctatgatgttgtgattatgagagaattgatggttaatttatgacaatgatgagagtgatgatgtttatctgtgatgatgatgagagtggagatgat |
14965979 |
T |
|
| Q |
409 |
gt |
410 |
Q |
| |
|
|| |
|
|
| T |
14965978 |
gt |
14965977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 9191181 - 9191065
Alignment:
| Q |
156 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
255 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| ||| |||||||||| | | | ||||| |||| || | |||| |||||||||| || || |
|
|
| T |
9191181 |
gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcctataactgtgataaagagtgatgatgattgatataatatatatgtgaataa |
9191082 |
T |
|
| Q |
256 |
attactacgatgggaaa |
272 |
Q |
| |
|
|| | ||||||| |||| |
|
|
| T |
9191081 |
ataaatacgatgagaaa |
9191065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 156 - 410
Target Start/End: Original strand, 22614701 - 22614955
Alignment:
| Q |
156 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
255 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
22614701 |
gataaggtggtgatataagcggatgatagagagtattgatgaggagtcctataactatgacagagagtgatgacgattaatattatatatatgtaaagaa |
22614800 |
T |
|
| Q |
256 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaatttatga |
355 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||| |||||||| ||||| ||| ||||||| ||||||||||| || |||||||| |||||| |
|
|
| T |
22614801 |
attactacgatgggaaatgatgaggttatattataataatgaagagaatgacgatgtatatattgttgtgatgatgagagtgtcgatggttaacttatga |
22614900 |
T |
|
| Q |
356 |
cgatgatgagagtgatgacatttatctaagatgatgatgggagtggtgatgatgt |
410 |
Q |
| |
|
||||||||||||||| || ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
22614901 |
cgatgatgagagtgacgatatttatctatgatgatgatgagagtggtgatgatgt |
22614955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 156 - 410
Target Start/End: Complemental strand, 11655631 - 11655377
Alignment:
| Q |
156 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| ||||||||||| || | ||||||||| | || || ||||||||||||||||||||||| |
|
|
| T |
11655631 |
gataaggtggtgatataagcggatgataaagaatattgatgaggagtcctatagctgtgacagagagtgacgatgattaatattatatatatgtaaagaa |
11655532 |
T |
|
| Q |
256 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaatttatga |
355 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||||||||| |||||||| ||||||||||||||||| ||||||||||| || |||||||| |||||| |
|
|
| T |
11655531 |
attactacgatggaaaatgatgaggttatattataataatgaagagaatgacgatgtctatgttgttgtgatgatgagagtgtccatggttaacttatga |
11655432 |
T |
|
| Q |
356 |
cgatgatgagagtgatgacatttatctaagatgatgatgggagtggtgatgatgt |
410 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
11655431 |
cgatgatgagagtgatgatatttatctatgatgatgatgagagtggtgatgatgt |
11655377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 83 - 390
Target Start/End: Complemental strand, 20026200 - 20025893
Alignment:
| Q |
83 |
agatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgat |
182 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||| | | ||||||||||||||||||||| || ||| || |||||||| ||||||||| | ||||| |
|
|
| T |
20026200 |
agatgaataataaaatagaataaagggatgttgacgtcaaatgagtcacgcgtaaggtgttgattaatgaagagataaggttgtgatataaacatatgat |
20026101 |
T |
|
| Q |
183 |
aaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagttt |
282 |
Q |
| |
|
| ||| |||||| | ||||||||| |||||| ||| ||||| ||||||| | |||||||||||||||||||||||||| | ||||| ||||||||| || |
|
|
| T |
20026100 |
agagaataatgaagaggagtcctacaactatgacaaagagtgatgacgattcatattatatatatgtaaagaaattaccatgatggcaaatgatgatgtt |
20026001 |
T |
|
| Q |
283 |
gtattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaatttatgacgatgatgagagtgatgacatttatct |
382 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| ||||||||||||||| | ||||||||| ||||| |||| |||||||||||| ||||||| |
|
|
| T |
20026000 |
atattataataacaatgacaatgatgatgtctatgtttttgtcatgatgagagcgttaatggttaagttatgccgatagtgagagtgatgatgtttatct |
20025901 |
T |
|
| Q |
383 |
aagatgat |
390 |
Q |
| |
|
| |||||| |
|
|
| T |
20025900 |
atgatgat |
20025893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 198 - 406
Target Start/End: Original strand, 13477489 - 13477694
Alignment:
| Q |
198 |
ggagtcctataactataacagagagtaatgacgagtaatattatatatat------gtaaagaaattactacgatgggaaatgatgagtttgtattataa |
291 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
13477489 |
ggagtcctataactgtaacaaagagtgatgacgattaatattatatatatatatatgtaaagaaattactacgatgggaaaggatgatgttatattataa |
13477588 |
T |
|
| Q |
292 |
taatgatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaatttatgacgatgatgagagtgatgacatttatctaagatgatg |
391 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| | | | ||||||||| ||| ||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
13477589 |
taatgatgt---------tgtctatgttgttgtgatgatgataatgttgatggttaatctataacgatgatgagagtgatgaattttatctatgatgatg |
13477679 |
T |
|
| Q |
392 |
atgggagtggtgatg |
406 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
13477680 |
atgagagtggtgatg |
13477694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 257
Target Start/End: Original strand, 4531649 - 4531820
Alignment:
| Q |
85 |
atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata |
183 |
Q |
| |
|
||||||| |||||||||||| | || |||| || || || ||||||||| |||||| |||| ||| || |||||||||||||||||| ||| ||||| |
|
|
| T |
4531649 |
atgaataataaaataaaatagaggggtgttggcgtataaatgagtcacgtgtaagggttggattaatgaagagataaggtggtgatataaacggttgata |
4531748 |
T |
|
| Q |
184 |
aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat |
257 |
Q |
| |
|
|||||||||||| ||| ||| |||| | | || ||||| ||||| | | |||||||||||||||||| |||| |
|
|
| T |
4531749 |
gagagtaatgatgaggaatcc-ataa-tgtgacgaagagtgatgacaattgatattatatatatgtaaataaat |
4531820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 80 - 373
Target Start/End: Original strand, 24831922 - 24832221
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| || || ||| || |||| | ||||||| ||||||||| |
|
|
| T |
24831922 |
gtgagatgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagttgactaatgaagagatacgatggtgatgtaagcggat |
24832021 |
T |
|
| Q |
180 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatat------atgtaaagaaattactacgatgggaaat |
273 |
Q |
| |
|
|||| |||||||||||| |||||||||||| | | ||| ||||| |||| || ||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
24832022 |
gatagagagtaatgatgaggagtcctataattgtgacaaagagtgatgatgattaatattatatatacatatatgtaaagaaattactacgatgagaaat |
24832121 |
T |
|
| Q |
274 |
gatgagtttgtattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaatttatgacgatgatgagagtgatga |
373 |
Q |
| |
|
|||||| || || ||||||| |||||||||||| |||||||||||||| || ||||||| ||| || |||||||| ||||||||||||||||| |||||| |
|
|
| T |
24832122 |
gatgaggttatactataatattgatgagaatgacgatgtctatgttgtcgtgatgatgatagtgtcgatggttaacttatgacgatgatgagaatgatga |
24832221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 348
Target Start/End: Complemental strand, 13935849 - 13935664
Alignment:
| Q |
162 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact |
261 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||| ||| ||||||||| | ||| ||||| ||||| | | ||| ||||| |||||||| ||| | | |
|
|
| T |
13935849 |
gtggtgatataaacggttgatagagagtaatgattaggaatcctataacggtgacaaagagtgatgacaattgatactatatctatgtaaatgaataaat |
13935750 |
T |
|
| Q |
262 |
acgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaa |
348 |
Q |
| |
|
||||| |||||| |||| || |||||||||||||| || || || ||||||| ||||||| ||||||||||| || |||||||| |
|
|
| T |
13935749 |
acgat-ggaaataatgatgttatattataataatgaagataacgactatgtctacattgttgtgatgatgagagtgtcgatggttaa |
13935664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 80 - 360
Target Start/End: Original strand, 14481522 - 14481808
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| ||||| ||| || |||| ||||||| ||||||||| |
|
|
| T |
14481522 |
gtgagatgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagtggattaatgaagagatacaatggtgatgtaagcggat |
14481621 |
T |
|
| Q |
180 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatat------tatatatatgtaaagaaattactacgatgggaaat |
273 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| | ||| ||||| |||| || |||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
14481622 |
gatagagagtaatgatgaggagtcctataactgtgacaaagagtgatgatgattaatattatatatatatatatgtaaagaaattactacgatgggacat |
14481721 |
T |
|
| Q |
274 |
gatgagtttgtattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaatttatgacgatg |
360 |
Q |
| |
|
|||||| || || ||||||| ||||||| |||| ||||||||||||||||| ||||||| ||| || |||||||| ||||||||||| |
|
|
| T |
14481722 |
gatgaggttatactataatattgatgaggatgacgatgtctatgttgttgtgatgatgatagtgtcgatggttaacttatgacgatg |
14481808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 239 - 410
Target Start/End: Complemental strand, 17790923 - 17790752
Alignment:
| Q |
239 |
tatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagttt |
338 |
Q |
| |
|
||||||||| || | | ||||||||||| | |||||||||| || ||||| ||| ||||| ||||||| ||||| ||||||||||| |||||||||| | |
|
|
| T |
17790923 |
tatatatatatatatatattactacgatagaaaatgatgaggttatattagaatgatgataagaatgacgatgtatatgttgttgtgatgatgagagagt |
17790824 |
T |
|
| Q |
339 |
caatggttaatttatgacgatgatgagagtgatgacatttatctaagatgatgatgggagtggtgatgatgt |
410 |
Q |
| |
|
| ||||||||||||| | ||||||||||||||||| ||||||| | |||||||||| |||||||||| |||| |
|
|
| T |
17790823 |
cgatggttaatttataaagatgatgagagtgatgatatttatcgatgatgatgatgagagtggtgatcatgt |
17790752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 239 - 410
Target Start/End: Complemental strand, 19099365 - 19099194
Alignment:
| Q |
239 |
tatatatatgtaaagaaattactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagttt |
338 |
Q |
| |
|
||||||||| || | | ||||||||||| | |||||||||| || ||||| ||| ||||| ||||||| ||||| ||||||||||| |||||||||| | |
|
|
| T |
19099365 |
tatatatatatatatatattactacgatagaaaatgatgaggttatattagaatgatgataagaatgacgatgtatatgttgttgtgatgatgagagagt |
19099266 |
T |
|
| Q |
339 |
caatggttaatttatgacgatgatgagagtgatgacatttatctaagatgatgatgggagtggtgatgatgt |
410 |
Q |
| |
|
| ||||||||||||| | ||||||||||||||||| ||||||| | |||||||||| |||||||||| |||| |
|
|
| T |
19099265 |
cgatggttaatttataaagatgatgagagtgatgatatttatcgatgatgatgatgagagtggtgatcatgt |
19099194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 80 - 247
Target Start/End: Complemental strand, 17791108 - 17790941
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
||||| |||||| || ||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| || ||||||||| || ||||||||||| |
|
|
| T |
17791108 |
gtgaggtgaataatacgataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggat |
17791009 |
T |
|
| Q |
180 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat |
247 |
Q |
| |
|
|| | |||||||||||| |||||||||||||| | ||||||||| |||| || ||||||||||||||| |
|
|
| T |
17791008 |
gaaagagagtaatgatgaggagtcctataactttgacagagagtgatgatgattaatattatatatat |
17790941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 80 - 247
Target Start/End: Complemental strand, 19099548 - 19099381
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
||||| |||||| || ||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| || ||||||||| || ||||||||||| |
|
|
| T |
19099548 |
gtgaggtgaataatacgataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggat |
19099449 |
T |
|
| Q |
180 |
gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat |
247 |
Q |
| |
|
|| | |||||||||||| |||||||||||||| | ||||||||| |||| || ||||||||||||||| |
|
|
| T |
19099448 |
gaaagagagtaatgatgaggagtcctataactttgacagagagtgatgatgattaatattatatatat |
19099381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 22159931 - 22159871
Alignment:
| Q |
163 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
223 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| |||||||||||| ||| ||||| |
|
|
| T |
22159931 |
tggtgatataaacggttgatagagagtaatgatgaggaatcctataactatgacaaagagt |
22159871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 21975335 - 21975275
Alignment:
| Q |
163 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
223 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| ||||| |
|
|
| T |
21975335 |
tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt |
21975275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 21997766 - 21997706
Alignment:
| Q |
163 |
tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt |
223 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| ||||| |
|
|
| T |
21997766 |
tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt |
21997706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1001 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold1001
Description:
Target: scaffold1001; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 156 - 406
Target Start/End: Complemental strand, 1545 - 1296
Alignment:
| Q |
156 |
gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa |
255 |
Q |
| |
|
||||| ||| ||| ||| |||||||||| |||||| | ||| ||||||||||||| | | ||||||| ||||| | ||||||| ||||| || ||| || |
|
|
| T |
1545 |
gataatgtgatgacatatgcggatgatatagagtatttatgaggagtcctataaccgtgaaagagagtgatgactattaatatt-tatatgtggaaataa |
1447 |
T |
|
| Q |
256 |
attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaatttatga |
355 |
Q |
| |
|
||||| || |||| |||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| | |||||||| ||||| |
|
|
| T |
1446 |
attacaacaatggaaaatgatgaggttatattataataatgatgagaatgacgatgtctatgttgttgtgatgatgatagtgtagatggttaacctatga |
1347 |
T |
|
| Q |
356 |
cgatgatgagagtgatgacatttatctaagatgatgatgggagtggtgatg |
406 |
Q |
| |
|
||||||||| || ||||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
1346 |
cgatgatgatagcgatgatatttatctatgatgatgatgagagtggtgatg |
1296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 85 - 406
Target Start/End: Original strand, 44586360 - 44586680
Alignment:
| Q |
85 |
atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata |
183 |
Q |
| |
|
||||||| | |||||||||| | ||||||| ||||||| ||||||| |||||||| |||| ||| | |||||||||||||||||| ||| ||||| |
|
|
| T |
44586360 |
atgaataatgaaataaaatagagggatgttgacatagaaatgagtcatgcgtaagggttggattaataaagagataaggtggtgatataaacggttgata |
44586459 |
T |
|
| Q |
184 |
aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttg |
283 |
Q |
| |
|
|||||||||||| ||| ||| ||| || ||||| ||||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
44586460 |
gagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattagtattatatatatgtaaagaaattactacgatatgaaatgatgatgtta |
44586557 |
T |
|
| Q |
284 |
tattataataat---gatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaatttatgacgatgatgagagtgatgacatttat |
380 |
Q |
| |
|
||||||||||| ||||||||||| | ||||| ||||||||| ||||||| | | ||||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
44586558 |
aattataataataatgatgagaatgacggtgtctgtgttgttgtgatgatgatgatgttgatggttaatctataacgatgatgagagtgatgatgtttat |
44586657 |
T |
|
| Q |
381 |
ctaagatgatgatgggagtggtgatg |
406 |
Q |
| |
|
||| |||||||| ||||||||||| |
|
|
| T |
44586658 |
ctatgatgatga---gagtggtgatg |
44586680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 24786377 - 24786268
Alignment:
| Q |
80 |
gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat |
179 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| | |||||| |||||| |||||||| | || ||| || | || |||||| ||||||| || || |
|
|
| T |
24786377 |
gtgagatgaataataaaataaaataaagggatgttgacgtagaataagtcacacgtaaggtatagattaatgaaaagagaaggtgaagatataaacgaat |
24786278 |
T |
|
| Q |
180 |
gataaagagt |
189 |
Q |
| |
|
|||| ||||| |
|
|
| T |
24786277 |
gatagagagt |
24786268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 16862432 - 16862347
Alignment:
| Q |
162 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat |
247 |
Q |
| |
|
||||| |||||| ||| ||||||||| |||||||| ||| ||||||||||| |||| || || || || ||||||||||||||| |
|
|
| T |
16862432 |
gtggtaatataaacggttgataaagactaatgatgaggaatcctataactacaacaaagggtgtcgatgattaatattatatatat |
16862347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 1567041 - 1567154
Alignment:
| Q |
162 |
gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact |
261 |
Q |
| |
|
|||||||||||| ||| |||| || ||||| ||| ||| || ||||| | | ||| ||||| ||||||| | |||||||||||||||||| |||| | | |
|
|
| T |
1567041 |
gtggtgatataaacggtggatagagggtaataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaat |
1567140 |
T |
|
| Q |
262 |
acgatgggaaatga |
275 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
1567141 |
acgatgagaaatga |
1567154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 363
Target Start/End: Original strand, 1567212 - 1567281
Alignment:
| Q |
294 |
atgatgagaatgatgatgtctatgttgttgtcatgatgagagtttcaatggttaatttatgacgatgatg |
363 |
Q |
| |
|
||||||||||||| |||||||||||| |||| | ||||| | | | ||||||||||||||||||||||| |
|
|
| T |
1567212 |
atgatgagaatgacgatgtctatgttattgtgaggatgataatgttgatggttaatttatgacgatgatg |
1567281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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