View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0755_low_29 (Length: 426)

Name: NF0755_low_29
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0755_low_29
NF0755_low_29
[»] chr7 (3 HSPs)
chr7 (163-324)||(1955222-1955384)
chr7 (1-83)||(1954914-1954996)
chr7 (242-294)||(1960367-1960419)
[»] scaffold0059 (2 HSPs)
scaffold0059 (165-295)||(14781-14911)
scaffold0059 (19-83)||(15157-15221)
[»] scaffold0015 (1 HSPs)
scaffold0015 (164-307)||(183741-183882)
[»] chr2 (2 HSPs)
chr2 (224-307)||(29225334-29225418)
chr2 (224-307)||(29338633-29338717)
[»] chr8 (2 HSPs)
chr8 (242-320)||(36738935-36739015)
chr8 (224-307)||(27352092-27352176)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 163 - 324
Target Start/End: Original strand, 1955222 - 1955384
Alignment:
Q  163 tttaaataacttagcttgttgtttgtttttaactaatatgctttggaagannnnnnn-gttaaatcttgcttttgtgtcctaaaaagaaaatggctaatg 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  1955222 tttaaataacttagcttgttgtttgtttttaactaatatgctttggaagaatttttttgttaaatcttgcttttgtgtcctaaaaagaaaatggctaatg 1955321  T
Q  262 aacatcaaagtagaagtgctcgaaagagccaaaatattgagcaaactcaggtgtgtgatgatg 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1955322 aacatcaaagtagaagtgctcgaaagagccaaaatattgagcaaactcaggtgtgtgatgatg 1955384  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1954914 - 1954996
Alignment:
Q  1 tcctgaccagtttctgcggtctcgcatgtggcctagggacataacaatttactttggagggggtgctgcatacggtggcacta 83  Q
    ||||||||| ||||||| |||| |||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||||    
T  1954914 tcctgaccaatttctgcagtcttgcatgtggcctagggacagaacaatttactctggagggggtggtacatacggtggcacta 1954996  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 1960367 - 1960419
Alignment:
Q  242 taaaaagaaaatggctaatgaacatcaaagtagaagtgctcgaaagagccaaa 294  Q
    ||||| |||||  ||| |||||||||||||| |||||||||||||||||||||    
T  1960367 taaaacgaaaagtgctcatgaacatcaaagttgaagtgctcgaaagagccaaa 1960419  T

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Target: scaffold0059 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 165 - 295
Target Start/End: Complemental strand, 14911 - 14781
Alignment:
Q  165 taaataacttagcttgttgtttgtttttaactaatatgctttggaagannnnnnngttaaatcttgcttttgtgtcctaaaaagaaaatggctaatgaac 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||| ||||||||||||||||||  ||||||    
T  14911 taaataacttagcttgttgtttgtttttaactaatatgctttggaagaatttttttgtaaatcttgcttttgtatcctaaaaagaaaatggcccatgaac 14812  T
Q  265 atcaaagtagaagtgctcgaaagagccaaaa 295  Q
    |||||||| ||| ||||| ||||||||||||    
T  14811 atcaaagttgaattgctcaaaagagccaaaa 14781  T

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Target: scaffold0059; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 15221 - 15157
Alignment:
Q  19 gtctcgcatgtggcctagggacataacaatttactttggagggggtgctgcatacggtggcacta 83  Q
    |||| ||||||||||| |||||||  || |||||| ||||||||||| |||| ||||||||||||    
T  15221 gtcttgcatgtggcctggggacatgccagtttactctggagggggtggtgcacacggtggcacta 15157  T

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Target: scaffold0015 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 183741 - 183882
Alignment:
Q  164 ttaaataacttagcttgttgtttgtttttaactaatatgctttggaagannnnnnngttaaatcttgcttttgtgtcctaaaaagaaaatggctaatgaa 263  Q
    |||||||||||||||||||||| |||||||||| || |||||||||  |       ||| |||||||||||||| || | |||||||||| ||| |||||    
T  183741 ttaaataacttagcttgttgtt-gtttttaactgatttgctttggataaatttt--gtttaatcttgcttttgtttcttgaaaagaaaattgctcatgaa 183837  T
Q  264 catcaaagta-gaagtgctcgaaagagccaaaatattgagcaaac 307  Q
    ||| || ||  |||||||||| ||||||||||| |||||||||||    
T  183838 cattaatgtttgaagtgctcggaagagccaaaagattgagcaaac 183882  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 29225334 - 29225418
Alignment:
Q  224 aatcttgcttttgtgtcctaaaaagaaaatggctaatgaacatcaaagta-gaagtgctcgaaagagccaaaatattgagcaaac 307  Q
    |||||||||||||| || | |||||||||| ||| |||||||| || ||  |||||||||| ||||||||||| |||||||||||    
T  29225334 aatcttgcttttgtttcttgaaaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattgagcaaac 29225418  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 29338633 - 29338717
Alignment:
Q  224 aatcttgcttttgtgtcctaaaaagaaaatggctaatgaacatcaaagta-gaagtgctcgaaagagccaaaatattgagcaaac 307  Q
    |||||||||||||| || | |||||||||| ||| |||||||| || ||  |||||||||| ||||||||||| |||||||||||    
T  29338633 aatcttgcttttgtttcttgaaaagaaaattgctcatgaacattaatgtttgaagtgctcggaagagccaaaagattgagcaaac 29338717  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 36739015 - 36738935
Alignment:
Q  242 taaaaagaaaatggctaatgaacatcaaagt-agaagtgctcgaaagagccaaaatattgagcaaac--tcaggtgtgtgat 320  Q
    |||| ||||||  ||| ||||| |||||||| ||||||||||||||||| | |||||||||||||||  |||||||||||||    
T  36739015 taaagagaaaaatgctcatgaatatcaaagttagaagtgctcgaaagagtc-aaatattgagcaaacattcaggtgtgtgat 36738935  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 27352092 - 27352176
Alignment:
Q  224 aatcttgcttttgtgtcctaaaaagaaaatggctaatgaacatcaaagta-gaagtgctcgaaagagccaaaatattgagcaaac 307  Q
    ||||||| |||||| || | |||||||||| | | |||||||| || ||  |||||||||| ||||||||||| |||||||||||    
T  27352092 aatcttgtttttgtttcttgaaaagaaaattggtcatgaacattaatgtttgaagtgctcggaagagccaaaagattgagcaaac 27352176  T

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