View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_3 (Length: 576)
Name: NF0755_low_3
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 9 - 504
Target Start/End: Original strand, 38272442 - 38272938
Alignment:
| Q |
9 |
agcagagagggagaaagacaggagtgataaaaggagaaaaatgaatgaatatattattgcaccgatggtttttgggacttggccattttatttagtagan |
108 |
Q |
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| T |
38272442 |
agcagagagggagaaagacaggagtgataaaaggagaaaaatgaatgaatatattattgcaccgatggtttttgggacttggccattttatttagtagat |
38272541 |
T |
|
| Q |
109 |
nnnnnnnnn-caacatgaaaagtttgatctaggtgggacccattgttaattatttaactcaaattcttatatgatttgtgtttgtgtgtgaatgtttgtt |
207 |
Q |
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| T |
38272542 |
ttttttttttcaacatgaaaagtttgatctaggtgggacccattgttaattatttaactcaaattcttatatgatttgtgtttgtgtgtgaatgtttgtt |
38272641 |
T |
|
| Q |
208 |
atcacggtgaatttgtctgaattgttgtagctttttataagatcgcgatgatggttggtggtggtttattgtaattctaacaaatatatcaattgtgata |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
38272642 |
atcacggtgaatttgtctgaattgttgtagctttttataagatcacgatgatggtaggtggtggttcattgtaattctaacaaatctatcaattgtgata |
38272741 |
T |
|
| Q |
308 |
tcaaatatgaattgttgacaatgtgatgtttgcgagtaacatgtaatcagctttggaagtgatctgtcaaggtttttattagctctttatattcaatctt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
38272742 |
ccaaatatgaattgttgacaatgtgatgtttgcgagtaacatgtaatcagctttggaaatgatctgtcaaggtttttgttagctctttatattcaatctt |
38272841 |
T |
|
| Q |
408 |
atctaaggagctaaaattacggtactttattgtaattatagcaaattcattgtgatatcaaacatacaccgaatctttgttgacaatatgatgatgt |
504 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38272842 |
atctaaggagctaaaattgcggtagtttattgtaattatagcaaattcattgtgatatcaaacatacaccgaatctttgttgacaatatgatgatgt |
38272938 |
T |
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