View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0755_low_32 (Length: 425)
Name: NF0755_low_32
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_32 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 2 - 415
Target Start/End: Original strand, 20286047 - 20286460
Alignment:
| Q |
2 |
catcatatggagccacaatatccacggggtatacacagcaaactgcggctatgcttgtctacttcgcaactcggatactaacaccactccgctttctccc |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| || |
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|
| T |
20286047 |
catcatatggagccacaatatcaacggggtatacacagcaaactgcggctatgcttggctacttcgcaactcggatactgacaccaatccgctttctacc |
20286146 |
T |
|
| Q |
102 |
cactcttggtcttgtatatggaagctaaagtcccctgaaaaattcaaactgttgatttggttagcttgccataacgccatcccgactatgtctcttcttg |
201 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20286147 |
cactcttggtcttggatatggaagctaaagtcccctgaaaaattcaaactgttcatttggttagcttgccataacgccatcccgactatgtctcttctcg |
20286246 |
T |
|
| Q |
202 |
aacaccgtcatatggccccctcttccacctgttccagatgtggagaagacgaagaaaccattatgcattgccttcgggattgtcgtttctcctccattat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20286247 |
aacaccgtcatatggccccctcttccacctgttccagatgtggagaagacgaagaaaccattatgcattgccttcgggattgtcgtttctcctccattat |
20286346 |
T |
|
| Q |
302 |
ttggcaccggctcggtttcacggataccgcttttttcaatgaagcttttccatcaagctggatcaaacaacacgctaccggtaacaactcttcccttttc |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20286347 |
ttggcaccggctcggtttcacggataccgcttttttcaacgaagcttttccatcaagctggatcaaacaacacgctaccggtaacaactcttcccttttc |
20286446 |
T |
|
| Q |
402 |
ctttccggtctctg |
415 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20286447 |
ctttccggtctctg |
20286460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 24530358 - 24530432
Alignment:
| Q |
219 |
ccctcttccacctgttccagatgtggagaagacgaagaaaccattatgcattgccttcgggattgtcgtttctcc |
293 |
Q |
| |
|
|||||| | |||||||| |||||||| || ||||| ||||| || ||||||||||||| |||||| |||||||| |
|
|
| T |
24530358 |
ccctctactacctgttcgagatgtggggaggacgatgaaactatcctgcattgccttcgtgattgtagtttctcc |
24530432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 2 - 415
Target Start/End: Original strand, 11898346 - 11898759
Alignment:
| Q |
2 |
catcatatggagccacaatatccacggggtatacacagcaaactgcggctatgcttgtctacttcgcaactcggatactaacaccactccgctttctccc |
101 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| || |
|
|
| T |
11898346 |
catcatatggagccataatatcaacggggtatacacagcaaactgcggctatgcttggctacttcgcaactcggatactgacaccaatccgctttctacc |
11898445 |
T |
|
| Q |
102 |
cactcttggtcttgtatatggaagctaaagtcccctgaaaaattcaaactgttgatttggttagcttgccataacgccatcccgactatgtctcttcttg |
201 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11898446 |
cactcttggtcttggatatggaagctaaagtcccctgaaaaattcaaactgtttatttggttagcttgccataacgccatcccgactatgtctcttctcg |
11898545 |
T |
|
| Q |
202 |
aacaccgtcatatggccccctcttccacctgttccagatgtggagaagacgaagaaaccattatgcattgccttcgggattgtcgtttctcctccattat |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11898546 |
aacaccgtcatatggccccctcttccacctgttccagatgtggagaagacgaagaaaccattatgcattgccttcggtattgtcgtttctcctccattat |
11898645 |
T |
|
| Q |
302 |
ttggcaccggctcggtttcacggataccgcttttttcaatgaagcttttccatcaagctggatcaaacaacacgctaccggtaacaactcttcccttttc |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11898646 |
ttggcaccggctcggtttcacggataccgcttttttcaacgaagcttttccatcaagctggatcaaacaacacgctaccggtaacaactcttcccttttc |
11898745 |
T |
|
| Q |
402 |
ctttccggtctctg |
415 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11898746 |
ctttccggtctctg |
11898759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 108 - 307
Target Start/End: Complemental strand, 26431541 - 26431342
Alignment:
| Q |
108 |
tggtcttgtatatggaagctaaagtcccctgaaaaattcaaactgttgatttggttagcttgccataacgccatcccgactatgtctcttcttgaacacc |
207 |
Q |
| |
|
|||||||| ||||||||||||||| || | ||||||||||| |||||||||||||| |||||||| || || ||||||||| | || ||||| | |||| |
|
|
| T |
26431541 |
tggtcttggatatggaagctaaagaccgcagaaaaattcaatctgttgatttggttggcttgccacaatgcgatcccgactttatcacttctccaccacc |
26431442 |
T |
|
| Q |
208 |
gtcatatggccccctcttccacctgttccagatgtggagaagacgaagaaaccattatgcattgccttcgggattgtcgtttctcctccattatttggca |
307 |
Q |
| |
|
|||| ||||| || || || |||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
26431441 |
gtcagatggctccttcctcaacctgttcgcgatgtggcgaagacgaagaaaccattatgcattgccttcgggactgtcgtttctcttccatcatttggca |
26431342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 2 - 415
Target Start/End: Complemental strand, 23131534 - 23131121
Alignment:
| Q |
2 |
catcatatggagccacaatatccacggggtatacacagcaaactgcggctatgcttgtctacttcgcaactcggatactaacaccactccgctttctccc |
101 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||||||| || |
|
|
| T |
23131534 |
catcatatggagccacaatatcaacggggtatacacagcaaactgcggctatgctgggctacttcgcaactcggatactgacaccaatccgctttctacc |
23131435 |
T |
|
| Q |
102 |
cactcttggtcttgtatatggaagctaaagtcccctgaaaaattcaaactgttgatttggttagcttgccataacgccatcccgactatgtctcttcttg |
201 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | | |
|
|
| T |
23131434 |
cactcttggtcttggttatggaagctaaagtcccctgaaaaattcaaactgttgatttggttagcttgccataacgccattccgacaatgtctcttttcg |
23131335 |
T |
|
| Q |
202 |
aacaccgtcatatggccccctcttccacctgttccagatgtggagaagacgaagaaaccattatgcattgccttcgggattgtcgtttctcctccattat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
23131334 |
aacaccgtcatatggccccctcttccacctgttccagatgtggagaagacgaagaaaccattatgcattgccttcgggattgtcatttctcctcaattat |
23131235 |
T |
|
| Q |
302 |
ttggcaccggctcggtttcacggataccgcttttttcaatgaagcttttccatcaagctggatcaaacaacacgctaccggtaacaactcttcccttttc |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23131234 |
ttggcaccggctcggtttcacggataccgcttttttcaacgaagcttttccataaagctggatcaaacaacacgctactggtaacaactcttcccttttc |
23131135 |
T |
|
| Q |
402 |
ctttccggtctctg |
415 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
23131134 |
ctttctggtctctg |
23131121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 5 - 347
Target Start/End: Complemental strand, 14652626 - 14652284
Alignment:
| Q |
5 |
catatggagccacaatatccacggggtatacacagcaaactgcggctatgcttgtctacttcgcaactcggatactaacaccactccgctttctccccac |
104 |
Q |
| |
|
||||||||| |||||||| | |||||||||||||||||| |||||||| |||| |||||| |||||||||||||| ||| || |||| ||| ||||| |
|
|
| T |
14652626 |
catatggagacacaatattaatggggtatacacagcaaacagcggctattcttggctactttgcaactcggatactgacatcaacccgccatctacccac |
14652527 |
T |
|
| Q |
105 |
tcttggtcttgtatatggaagctaaagtcccctgaaaaattcaaactgttgatttggttagcttgccataacgccatcccgactatgtctcttcttgaac |
204 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||||||| ||||||||| | |||||||| ||| |
|
|
| T |
14652526 |
tcttggtcttggatatggaagctaaaatcccccgaaaaattcaaactgttgatttggctggcttgccataacgcgatcccgactctatctcttctccaac |
14652427 |
T |
|
| Q |
205 |
accgtcatatggccccctcttccacctgttccagatgtggagaagacgaagaaaccattatgcattgccttcgggattgtcgtttctcctccattatttg |
304 |
Q |
| |
|
|||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14652426 |
accgacatatggctccctcttctacctgttcgagatgtggagaagacgaagaaaccataatgcattgccttcgggattgtcgcttctcctccattatttg |
14652327 |
T |
|
| Q |
305 |
gcaccggctcggtttcacggataccgcttttttcaatgaagct |
347 |
Q |
| |
|
| ||| ||||||||| || |||| || |||| ||||||||||| |
|
|
| T |
14652326 |
gtaccagctcggttttactgataacgtttttctcaatgaagct |
14652284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 53321255 - 53321340
Alignment:
| Q |
150 |
ctgttgatttggttagcttgccataacgccatcccgactatgtctcttcttgaacaccgtcatatggccccctcttccacctgttc |
235 |
Q |
| |
|
|||||||||||| | |||||||| || || ||||||||| | || ||||| | |||||||| ||||| ||||| ||||||||||| |
|
|
| T |
53321255 |
ctgttgatttggctggcttgccacaatgcgatcccgactttatcacttctccatcaccgtcaaatggctccctcctccacctgttc |
53321340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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