View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0755_low_33 (Length: 423)

Name: NF0755_low_33
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0755_low_33
NF0755_low_33
[»] chr8 (7 HSPs)
chr8 (4-200)||(11611572-11611771)
chr8 (258-308)||(11611829-11611879)
chr8 (1-72)||(12763334-12763405)
chr8 (341-374)||(11611905-11611938)
chr8 (1-46)||(38573289-38573334)
chr8 (16-72)||(44395633-44395689)
chr8 (25-82)||(13018450-13018507)
[»] chr6 (1 HSPs)
chr6 (14-78)||(33134276-33134340)
[»] chr7 (5 HSPs)
chr7 (1-46)||(48488493-48488538)
chr7 (1-77)||(45618521-45618597)
chr7 (1-72)||(28514610-28514681)
chr7 (1-72)||(45662307-45662378)
chr7 (24-68)||(46347114-46347158)
[»] chr4 (4 HSPs)
chr4 (1-80)||(9093655-9093734)
chr4 (1-46)||(37624825-37624870)
chr4 (1-71)||(31861625-31861695)
chr4 (1-46)||(3121056-3121101)
[»] chr3 (2 HSPs)
chr3 (1-72)||(31580368-31580439)
chr3 (1-55)||(53466303-53466357)
[»] chr2 (4 HSPs)
chr2 (6-78)||(38402503-38402575)
chr2 (6-72)||(19955050-19955116)
chr2 (6-72)||(39791504-39791570)
chr2 (1-53)||(41283329-41283381)
[»] chr5 (2 HSPs)
chr5 (1-46)||(34338903-34338948)
chr5 (1-65)||(32292292-32292356)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 11611572 - 11611771
Alignment:
Q  4 ttttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagacactaaaaataatctatctcggaacacaaatt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||  | ||| ||||| |||||| |||||  |||||||||| ||||||  |||| |||||    
T  11611572 ttttttcaaagcataatatctttttatgggttccttaaacaatgtccttaggacacttgttaacaagaccttaaaaataatttatctcaaaacataaatt 11611671  T
Q  104 tatatnnnnnnnnctttacaaaccaaaatcaaacttttcattattgag---agtgtttgcatggtatccaaaaaaatcttagttcaaacttgtaacttcc 200  Q
    |||||        |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  11611672 tatataaaaaaaactttacaaaccaaaatcaaacttttcattattgaggagagtgtttgcatggtatccaaaaaaatcctagttcaaacttgaaacttcc 11611771  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 11611829 - 11611879
Alignment:
Q  258 gaaatgccagtgagtaaagcatatagctaaactctatcctacagcatcttt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11611829 gaaatgccagtgagtaaagcatatagctaaactctatcctacagcatcttt 11611879  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 12763334 - 12763405
Alignment:
Q  1 ttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagac 72  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||| |||||| ||||  |||||| |||||    
T  12763334 ttatattttcaaagcatactttctttttatgggttccttaaacaatgcctttaggacatttgttaacaagac 12763405  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 374
Target Start/End: Original strand, 11611905 - 11611938
Alignment:
Q  341 tattcaaactaaacaaggaccctcatccctagat 374  Q
    ||||||||||||||||||||||||||||||||||    
T  11611905 tattcaaactaaacaaggaccctcatccctagat 11611938  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38573334 - 38573289
Alignment:
Q  1 ttattttttcaaagcataatatctttttatgggttccttaaacaat 46  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||    
T  38573334 ttatattttcaaggcataatttctttttatgggttccttaaacaat 38573289  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 44395689 - 44395633
Alignment:
Q  16 ataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagac 72  Q
    ||||| ||||||||||||||||||||||||| || ||| ||||| |||||| |||||    
T  44395689 ataatttctttttatgggttccttaaacaatgcccttatgacacttgttaacaagac 44395633  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 13018507 - 13018450
Alignment:
Q  25 ttttatgggttccttaaacaatacctttaagacacatgttaataagacactaaaaata 82  Q
    |||||||||||||||||||||| || ||| ||||| |||||| ||||| || ||||||    
T  13018507 ttttatgggttccttaaacaatgcccttaggacacttgttaacaagacccttaaaata 13018450  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 33134276 - 33134340
Alignment:
Q  14 gcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagacactaaa 78  Q
    ||||||| | ||||||||||||||||||||||| |||||||||||| |||||| ||||| |||||    
T  33134276 gcataatttttttttatgggttccttaaacaatgcctttaagacacttgttaacaagaccctaaa 33134340  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 48488493 - 48488538
Alignment:
Q  1 ttattttttcaaagcataatatctttttatgggttccttaaacaat 46  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||    
T  48488493 ttatattttcaaagcataatttctttttatgggttccttaaacaat 48488538  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 45618521 - 45618597
Alignment:
Q  1 ttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagacactaa 77  Q
    |||| |||||||  |||||| || ||||||||||||||||||||||||| ||| | ||| |||||||||||| ||||    
T  45618521 ttatattttcaagacataatttccttttatgggttccttaaacaatacccttagggcacttgttaataagaccctaa 45618597  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 28514681 - 28514610
Alignment:
Q  1 ttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagac 72  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||||| || ||| | ||| |||||| |||||    
T  28514681 ttatattttcaaggcataatttctttttatgggttccttaaacaatgcccttagggcacttgttaacaagac 28514610  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 45662307 - 45662378
Alignment:
Q  1 ttattttttcaaagcataatatctttttatggg-ttccttaaacaatacctttaagacacatgttaataagac 72  Q
    |||| |||||||| |||||| |||||||||||| |||||||||||||||  ||||||||| |||||| |||||    
T  45662307 ttatattttcaaa-cataatttctttttatgggattccttaaacaatactcttaagacacttgttaacaagac 45662378  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 46347114 - 46347158
Alignment:
Q  24 tttttatgggttccttaaacaatacctttaagacacatgttaata 68  Q
    |||||||||||| ||||||||||  ||||||||||| ||||||||    
T  46347114 tttttatgggtttcttaaacaatgtctttaagacacttgttaata 46347158  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 9093655 - 9093734
Alignment:
Q  1 ttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagacactaaaaa 80  Q
    |||| ||||||| ||| ||| |||||||||||||||||||||||||  | ||| ||||| |||||| ||||| |||||||    
T  9093655 ttatattttcaaggcaaaatttctttttatgggttccttaaacaatgtccttaggacacttgttaacaagaccctaaaaa 9093734  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 37624870 - 37624825
Alignment:
Q  1 ttattttttcaaagcataatatctttttatgggttccttaaacaat 46  Q
    |||| |||||||||||| || |||||||||||||||||||||||||    
T  37624870 ttatattttcaaagcattatttctttttatgggttccttaaacaat 37624825  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31861625 - 31861695
Alignment:
Q  1 ttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataaga 71  Q
    |||| |||||||  |||||| ||||||||||| |||||||||||||||  ||| ||||| |||||| ||||    
T  31861625 ttatattttcaagacataatttctttttatggattccttaaacaatactcttaggacacttgttaacaaga 31861695  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3121101 - 3121056
Alignment:
Q  1 ttattttttcaaagcataatatctttttatgggttccttaaacaat 46  Q
    |||| |||||||  |||||| |||||||||||||||||||||||||    
T  3121101 ttatattttcaagacataatttctttttatgggttccttaaacaat 3121056  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 31580368 - 31580439
Alignment:
Q  1 ttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagac 72  Q
    |||| |||||||| |||||| | ||||| ||||||| |||||||||||| ||||||||| |||||| |||||    
T  31580368 ttatattttcaaaacataatttttttttgtgggttctttaaacaatacccttaagacacttgttaacaagac 31580439  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 53466303 - 53466357
Alignment:
Q  1 ttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaag 55  Q
    |||| |||| |||||||||| ||||||||| ||||||||||||||| || |||||    
T  53466303 ttatatttttaaagcataatttctttttataggttccttaaacaatgccattaag 53466357  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 38402575 - 38402503
Alignment:
Q  6 ttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagacactaaa 78  Q
    |||||||| |||||| ||||||||||| ||||||||||||| || ||| ||||| |||||  ||||| |||||    
T  38402575 ttttcaaaacataatttctttttatggattccttaaacaatgcccttatgacacttgttagcaagaccctaaa 38402503  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 19955116 - 19955050
Alignment:
Q  6 ttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagac 72  Q
    |||||||| |||||| ||||||| ||||||||||||||||| |  ||||| ||| |||||| |||||    
T  19955116 ttttcaaaacataatttctttttgtgggttccttaaacaatgctcttaaggcacttgttaacaagac 19955050  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 39791570 - 39791504
Alignment:
Q  6 ttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagac 72  Q
    |||||||| |||||| ||||||| ||| ||| |||||||||||| ||| ||||| |||||| |||||    
T  39791570 ttttcaaaacataatttctttttgtggattctttaaacaatacccttaggacacttgttaacaagac 39791504  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41283381 - 41283329
Alignment:
Q  1 ttattttttcaaagcataatatctttttatgggttccttaaacaataccttta 53  Q
    |||| ||||||| | ||||| |||||||||| |||||||||||||||| ||||    
T  41283381 ttatattttcaaggtataatttctttttatgagttccttaaacaatactttta 41283329  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34338948 - 34338903
Alignment:
Q  1 ttattttttcaaagcataatatctttttatgggttccttaaacaat 46  Q
    |||| ||||||| ||||||| ||||||||||||||| |||||||||    
T  34338948 ttatattttcaaggcataatttctttttatgggttctttaaacaat 34338903  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 32292292 - 32292356
Alignment:
Q  1 ttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgtta 65  Q
    |||| |||||||| | |||| | ||||||| |||||||||||||||||| ||| ||||| |||||    
T  32292292 ttatattttcaaaacgtaatttatttttataggttccttaaacaatacccttaggacacttgtta 32292356  T

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