View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0755_low_38 (Length: 401)
Name: NF0755_low_38
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_38 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 5 - 401
Target Start/End: Original strand, 47998211 - 47998607
Alignment:
| Q |
5 |
gaggagcagagacagatggtggaagcaagtaggcagttgataatgcagaggacagggctgactgctagggactttaggattcttgatcctatgttgtcat |
104 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47998211 |
gaggggcagagacagatggtggaggcaagtaggcagttgataatgcagaggacagggctgactgctagggactttaggattcttgatcctatgttgtcat |
47998310 |
T |
|
| Q |
105 |
actcttccacaatcgtggggcgtgacagagcaattgtcttaaacttggaacaaattaaggctatcatcactgcacatgaggttcttttgctcaattctag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47998311 |
actcttccacaatcgtggggcgtgacagagcaattgtcttaaacttggaacaaattaaggctatcatcactgcacatgaggttcttttgctcaattctag |
47998410 |
T |
|
| Q |
205 |
agacccttctgttatcccttttgttgatgaacttcatgcacaaattcttcatcatcacactactgttactgatcatcctcaacctcaggtagtttcttcn |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47998411 |
agacccttctgttatcccttttgttgatgaacttcatgcacaaattcttcatcatcacactactgttactgatcatcctcaacctcaggtagtttcttct |
47998510 |
T |
|
| Q |
305 |
nnnnnnnnnnnnnnnnnnnnnncaaaatagtgtgggaaaagagacaaagatcattattaattgattttgactaaagtatttgacttgttgacttgac |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47998511 |
ttttaatttaatttaatttttacaaaatagtgtgggaaaagagacaaagatcattattaattgattttgactaaagtatttgacttgttgacttgac |
47998607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5880 times since January 2019
Visitors: 4860