View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0755_low_40 (Length: 399)

Name: NF0755_low_40
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0755_low_40
NF0755_low_40
[»] scaffold0145 (1 HSPs)
scaffold0145 (80-313)||(12552-12785)
[»] chr4 (5 HSPs)
chr4 (80-313)||(16284932-16285165)
chr4 (156-313)||(18231449-18231604)
chr4 (156-312)||(11555916-11556070)
chr4 (186-299)||(11098355-11098468)
chr4 (80-145)||(11098291-11098356)
[»] chr6 (4 HSPs)
chr6 (80-313)||(10641216-10641449)
chr6 (81-313)||(14970060-14970294)
chr6 (158-313)||(10906699-10906854)
chr6 (156-272)||(9191065-9191181)
[»] chr7 (5 HSPs)
chr7 (156-312)||(22614701-22614857)
chr7 (156-313)||(11655474-11655631)
chr7 (83-313)||(20025970-20026200)
chr7 (198-299)||(13477489-13477596)
chr7 (85-257)||(4531649-4531820)
[»] chr5 (2 HSPs)
chr5 (80-313)||(24831922-24832161)
chr5 (162-297)||(13935715-13935849)
[»] chr3 (6 HSPs)
chr3 (80-313)||(14481522-14481761)
chr3 (80-247)||(17790941-17791108)
chr3 (80-247)||(19099381-19099548)
chr3 (163-223)||(22159871-22159931)
chr3 (163-223)||(21975275-21975335)
chr3 (163-223)||(21997706-21997766)
[»] chr2 (3 HSPs)
chr2 (85-300)||(44586360-44586574)
chr2 (80-189)||(24786268-24786377)
chr2 (162-247)||(16862347-16862432)
[»] scaffold1001 (1 HSPs)
scaffold1001 (156-313)||(1389-1545)
[»] chr1 (1 HSPs)
chr1 (162-275)||(1567041-1567154)


Alignment Details
Target: scaffold0145 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 80 - 313
Target Start/End: Complemental strand, 12785 - 12552
Alignment:
Q  80 gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat 179  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12785 gtgagatgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagcggat 12686  T
Q  180 gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgag 279  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12685 gataaagagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgag 12586  T
Q  280 tttgtattataataatgatgagaatgatgatgtc 313  Q
    ||| ||||||||||||||||||||||||||||||    
T  12585 tttatattataataatgatgagaatgatgatgtc 12552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 80 - 313
Target Start/End: Original strand, 16284932 - 16285165
Alignment:
Q  80 gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat 179  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  16284932 gtgagatgaatactaaaataaaataaatggatgttggcatagaatgagtcacgcgtaaggtgtggaataacgacaagataaggtggtgatataagtggat 16285031  T
Q  180 gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgag 279  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16285032 gataaagagtaatgatggggagtcctataactatgacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgag 16285131  T
Q  280 tttgtattataataatgatgagaatgatgatgtc 313  Q
    ||| ||||||||||||||||||||||||||||||    
T  16285132 tttatattataataatgatgagaatgatgatgtc 16285165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 313
Target Start/End: Original strand, 18231449 - 18231604
Alignment:
Q  156 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 255  Q
    |||||||||||||||||| ||| ||||| |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| |||||||||||||||||||||||    
T  18231449 gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattaatattatatatatgtaaagaa 18231546  T
Q  256 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 313  Q
    ||||||||||| | |||||||||  || ||||||||||||||||||||||| ||||||    
T  18231547 attactacgatagaaaatgatgatgttatattataataatgatgagaatgacgatgtc 18231604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 156 - 312
Target Start/End: Complemental strand, 11556070 - 11555916
Alignment:
Q  156 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 255  Q
    ||||||||||||||||||  || ||||| ||||||||||||  || ||| ||| || | ||| ||||| ||||||| |||||||||||||||||||||||    
T  11556070 gataaggtggtgatataaatggttgatagagagtaatgatgatgaatcc-ata-ctgtcacaaagagtgatgacgattaatattatatatatgtaaagaa 11555973  T
Q  256 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt 312  Q
    ||||||||||| ||||||| |||  || ||||||||||||||||||||||| |||||    
T  11555972 attactacgataggaaatgttgatgttatattataataatgatgagaatgacgatgt 11555916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 186 - 299
Target Start/End: Original strand, 11098355 - 11098468
Alignment:
Q  186 gagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttgta 285  Q
    ||||||||||| |||||||||||| | |||  |||||| ||||||| ||||||||||||||||||||||||||||||   |||||||| ||||  || ||    
T  11098355 gagtaatgatgaggagtcctataattgtaatggagagtgatgacgattaatattatatatatgtaaagaaattactattgtgggaaataatgatgttata 11098454  T
Q  286 ttataataatgatg 299  Q
    ||||||||||||||    
T  11098455 ttataataatgatg 11098468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 11098291 - 11098356
Alignment:
Q  80 gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtgga 145  Q
    |||||||||||| |||| ||||||||| |||||||  | || || ||||||||| |||||||||||    
T  11098291 gtgagatgaataataaagtaaaataaagggatgttgacgtataaggagtcacgcataaggtgtgga 11098356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 80 - 313
Target Start/End: Original strand, 10641216 - 10641449
Alignment:
Q  80 gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat 179  Q
    |||||||||||| ||||||||| |||||||||||| || ||||||||||||| ||| ||| ||||| ||| ||   ||||||||||||||||||||||||    
T  10641216 gtgagatgaataataaaataaagtaaatggatgttggcgtagaatgagtcacacgtgaggcgtggattaatgaagagataaggtggtgatataagcggat 10641315  T
Q  180 gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgag 279  Q
    |||| |||||||||| | |||||||||||||| | ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  10641316 gatagagagtaatgacgaggagtcctataactgtgacagagagcgatgacgattaatattatatatatgtaaagaaattactacgatgggaaattatgag 10641415  T
Q  280 tttgtattataataatgatgagaatgatgatgtc 313  Q
     || ||||||||||||||||||||||||||||||    
T  10641416 gttatattataataatgatgagaatgatgatgtc 10641449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 81 - 313
Target Start/End: Complemental strand, 14970294 - 14970060
Alignment:
Q  81 tgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatg 180  Q
    ||||| ||||| |||||||||||||| | |||||    ||||||||||||| ||||| ||||||| ||| ||   ||||| ||||||||||||  |||||    
T  14970294 tgagaagaataataaaataaaataaaggaatgttgatgtagaatgagtcactcgtaaagtgtggattaatgaagagataaagtggtgatataaatggatg 14970195  T
Q  181 ataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatat--atatgtaaagaaattactacgatgggaaatgatga 278  Q
    ||| |||||||||||| ||||||||| |||| | ||| ||| | ||||||  |||||||||||  |||| || |||||||||  ||||||||||||||||    
T  14970194 atagagagtaatgatgaggagtcctacaactgtgacaaagaatgatgacggttaatattatatatatatttatagaaattaccgcgatgggaaatgatga 14970095  T
Q  279 gtttgtattataataatgatgagaatgatgatgtc 313  Q
      || |||||||||||  |||||||||| ||||||    
T  14970094 tgttatattataataacaatgagaatgacgatgtc 14970060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 313
Target Start/End: Original strand, 10906699 - 10906854
Alignment:
Q  158 taaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat 257  Q
    |||||||||||||||| ||| ||| |||||||||||| | ||| ||||||||||   ||||||||| | |  |  ||||||||| ||||||| || | ||    
T  10906699 taaggtggtgatataaacggttgacaaagagtaatgacgaggaatcctataactgcgacagagagtgaagggggttaatattatgtatatgtcaacatat 10906798  T
Q  258 tactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 313  Q
     | || |||| ||||||||||  || ||||||||||||||||||||||| ||||||    
T  10906799 aaataggatgtgaaatgatgatgttatattataataatgatgagaatgacgatgtc 10906854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 9191181 - 9191065
Alignment:
Q  156 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 255  Q
    |||||||||||||||||| ||| ||||| |||||||||||| ||| |||||||||| | | | ||||| |||| || | |||| |||||||||| || ||    
T  9191181 gataaggtggtgatataaacggttgatagagagtaatgatgaggaatcctataactgtgataaagagtgatgatgattgatataatatatatgtgaataa 9191082  T
Q  256 attactacgatgggaaa 272  Q
    || | ||||||| ||||    
T  9191081 ataaatacgatgagaaa 9191065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 156 - 312
Target Start/End: Original strand, 22614701 - 22614857
Alignment:
Q  156 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 255  Q
    |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  22614701 gataaggtggtgatataagcggatgatagagagtattgatgaggagtcctataactatgacagagagtgatgacgattaatattatatatatgtaaagaa 22614800  T
Q  256 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgt 312  Q
    |||||||||||||||||||||||| || |||||||||||||| |||||||| |||||    
T  22614801 attactacgatgggaaatgatgaggttatattataataatgaagagaatgacgatgt 22614857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 156 - 313
Target Start/End: Complemental strand, 11655631 - 11655474
Alignment:
Q  156 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 255  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||||||| || | ||||||||| | || || |||||||||||||||||||||||    
T  11655631 gataaggtggtgatataagcggatgataaagaatattgatgaggagtcctatagctgtgacagagagtgacgatgattaatattatatatatgtaaagaa 11655532  T
Q  256 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 313  Q
    ||||||||||||| |||||||||| || |||||||||||||| |||||||| ||||||    
T  11655531 attactacgatggaaaatgatgaggttatattataataatgaagagaatgacgatgtc 11655474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 83 - 313
Target Start/End: Complemental strand, 20026200 - 20025970
Alignment:
Q  83 agatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgat 182  Q
    ||||||||| ||||||| |||||| |||||||  | |  ||||||||||||||||||||| || ||| ||   |||||||| ||||||||| |  |||||    
T  20026200 agatgaataataaaatagaataaagggatgttgacgtcaaatgagtcacgcgtaaggtgttgattaatgaagagataaggttgtgatataaacatatgat 20026101  T
Q  183 aaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagttt 282  Q
    | ||| |||||| | ||||||||| |||||| ||| ||||| ||||||| | |||||||||||||||||||||||||| | ||||| |||||||||  ||    
T  20026100 agagaataatgaagaggagtcctacaactatgacaaagagtgatgacgattcatattatatatatgtaaagaaattaccatgatggcaaatgatgatgtt 20026001  T
Q  283 gtattataataatgatgagaatgatgatgtc 313  Q
     |||||||||||  |||| ||||||||||||    
T  20026000 atattataataacaatgacaatgatgatgtc 20025970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 299
Target Start/End: Original strand, 13477489 - 13477596
Alignment:
Q  198 ggagtcctataactataacagagagtaatgacgagtaatattata------tatatgtaaagaaattactacgatgggaaatgatgagtttgtattataa 291  Q
    |||||||||||||| ||||| ||||| ||||||| ||||||||||      |||||||||||||||||||||||||||||| |||||  || ||||||||    
T  13477489 ggagtcctataactgtaacaaagagtgatgacgattaatattatatatatatatatgtaaagaaattactacgatgggaaaggatgatgttatattataa 13477588  T
Q  292 taatgatg 299  Q
    ||||||||    
T  13477589 taatgatg 13477596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 257
Target Start/End: Original strand, 4531649 - 4531820
Alignment:
Q  85 atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata 183  Q
    ||||||| |||||||||||| | || |||| || || || ||||||||| ||||||  |||| ||| ||   |||||||||||||||||| ||| |||||    
T  4531649 atgaataataaaataaaatagaggggtgttggcgtataaatgagtcacgtgtaagggttggattaatgaagagataaggtggtgatataaacggttgata 4531748  T
Q  184 aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaat 257  Q
     |||||||||||| ||| ||| |||| | | ||  ||||| ||||| | | |||||||||||||||||| ||||    
T  4531749 gagagtaatgatgaggaatcc-ataa-tgtgacgaagagtgatgacaattgatattatatatatgtaaataaat 4531820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 80 - 313
Target Start/End: Original strand, 24831922 - 24832161
Alignment:
Q  80 gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat 179  Q
    |||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| || || ||| ||   |||| | ||||||| |||||||||    
T  24831922 gtgagatgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagttgactaatgaagagatacgatggtgatgtaagcggat 24832021  T
Q  180 gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattat------atatatgtaaagaaattactacgatgggaaat 273  Q
    |||| |||||||||||| |||||||||||| | | ||| ||||| |||| || |||||||||      |||||||||||||||||||||||||| |||||    
T  24832022 gatagagagtaatgatgaggagtcctataattgtgacaaagagtgatgatgattaatattatatatacatatatgtaaagaaattactacgatgagaaat 24832121  T
Q  274 gatgagtttgtattataataatgatgagaatgatgatgtc 313  Q
    |||||| || || ||||||| |||||||||||| ||||||    
T  24832122 gatgaggttatactataatattgatgagaatgacgatgtc 24832161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 297
Target Start/End: Complemental strand, 13935849 - 13935715
Alignment:
Q  162 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact 261  Q
    |||||||||||| ||| ||||| |||||||||||  ||| |||||||||  | ||| ||||| ||||| | | ||| ||||| ||||||||  ||| | |    
T  13935849 gtggtgatataaacggttgatagagagtaatgattaggaatcctataacggtgacaaagagtgatgacaattgatactatatctatgtaaatgaataaat 13935750  T
Q  262 acgatgggaaatgatgagtttgtattataataatga 297  Q
    ||||| |||||| ||||  || ||||||||||||||    
T  13935749 acgat-ggaaataatgatgttatattataataatga 13935715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 80 - 313
Target Start/End: Original strand, 14481522 - 14481761
Alignment:
Q  80 gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat 179  Q
    |||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||| ||||| ||| ||   ||||   ||||||| |||||||||    
T  14481522 gtgagatgaataataaaataaaataaagggatgttggcgtagaatgagtcacgcgtaaggagtggattaatgaagagatacaatggtgatgtaagcggat 14481621  T
Q  180 gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatat------tatatatatgtaaagaaattactacgatgggaaat 273  Q
    |||| |||||||||||| |||||||||||||| | ||| ||||| |||| || ||||||      |||||||||||||||||||||||||||||||| ||    
T  14481622 gatagagagtaatgatgaggagtcctataactgtgacaaagagtgatgatgattaatattatatatatatatatgtaaagaaattactacgatgggacat 14481721  T
Q  274 gatgagtttgtattataataatgatgagaatgatgatgtc 313  Q
    |||||| || || ||||||| ||||||| |||| ||||||    
T  14481722 gatgaggttatactataatattgatgaggatgacgatgtc 14481761  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 80 - 247
Target Start/End: Complemental strand, 17791108 - 17790941
Alignment:
Q  80 gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat 179  Q
    ||||| |||||| ||  ||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| ||   ||||||||| || |||||||||||    
T  17791108 gtgaggtgaataatacgataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggat 17791009  T
Q  180 gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat 247  Q
    || | |||||||||||| |||||||||||||| | ||||||||| |||| || |||||||||||||||    
T  17791008 gaaagagagtaatgatgaggagtcctataactttgacagagagtgatgatgattaatattatatatat 17790941  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 80 - 247
Target Start/End: Complemental strand, 19099548 - 19099381
Alignment:
Q  80 gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat 179  Q
    ||||| |||||| ||  ||||| |||| |||||| ||| ||||||||| |||| |||| ||||||| ||| ||   ||||||||| || |||||||||||    
T  19099548 gtgaggtgaataatacgataaagtaaagggatgtcagcgtagaatgagccacgagtaaagtgtggattaatgaagagataaggtgatggtataagcggat 19099449  T
Q  180 gataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat 247  Q
    || | |||||||||||| |||||||||||||| | ||||||||| |||| || |||||||||||||||    
T  19099448 gaaagagagtaatgatgaggagtcctataactttgacagagagtgatgatgattaatattatatatat 19099381  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 22159931 - 22159871
Alignment:
Q  163 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 223  Q
    ||||||||||| ||| ||||| |||||||||||| ||| |||||||||||| ||| |||||    
T  22159931 tggtgatataaacggttgatagagagtaatgatgaggaatcctataactatgacaaagagt 22159871  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 21975335 - 21975275
Alignment:
Q  163 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 223  Q
    ||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| |||||    
T  21975335 tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt 21975275  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 21997766 - 21997706
Alignment:
Q  163 tggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagt 223  Q
    ||||||||||| ||| ||||| |||||||||||| ||| ||| |||||||| ||| |||||    
T  21997766 tggtgatataaacggttgatagagagtaatgatgaggaatccaataactatgacaaagagt 21997706  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 300
Target Start/End: Original strand, 44586360 - 44586574
Alignment:
Q  85 atgaatactaaaataaaataaatggatgttagcatagaa-tgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggatgata 183  Q
    ||||||| | |||||||||| | |||||||  ||||||| ||||||| ||||||||  |||| |||  |   |||||||||||||||||| ||| |||||    
T  44586360 atgaataatgaaataaaatagagggatgttgacatagaaatgagtcatgcgtaagggttggattaataaagagataaggtggtgatataaacggttgata 44586459  T
Q  184 aagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattactacgatgggaaatgatgagtttg 283  Q
     |||||||||||| ||| ||| ||| || ||||| ||||| ||||||| || |||||||||||||||||||||||||||||||  ||||||||||  ||     
T  44586460 gagagtaatgatgaggaatcc-ata-ctgtaacaaagagtgatgacgattagtattatatatatgtaaagaaattactacgatatgaaatgatgatgtta 44586557  T
Q  284 tattataataatgatga 300  Q
     ||||||||||| ||||    
T  44586558 aattataataataatga 44586574  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 24786377 - 24786268
Alignment:
Q  80 gtgagatgaatactaaaataaaataaatggatgttagcatagaatgagtcacgcgtaaggtgtggaataacgacaggataaggtggtgatataagcggat 179  Q
    |||||||||||| |||||||||||||| |||||||  | |||||| |||||| |||||||| | || ||| || | || ||||||  ||||||| || ||    
T  24786377 gtgagatgaataataaaataaaataaagggatgttgacgtagaataagtcacacgtaaggtatagattaatgaaaagagaaggtgaagatataaacgaat 24786278  T
Q  180 gataaagagt 189  Q
    |||| |||||    
T  24786277 gatagagagt 24786268  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 16862432 - 16862347
Alignment:
Q  162 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatat 247  Q
    ||||| |||||| ||| ||||||||| |||||||| ||| ||||||||||| |||| || ||   || || |||||||||||||||    
T  16862432 gtggtaatataaacggttgataaagactaatgatgaggaatcctataactacaacaaagggtgtcgatgattaatattatatatat 16862347  T

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Target: scaffold1001 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 156 - 313
Target Start/End: Complemental strand, 1545 - 1389
Alignment:
Q  156 gataaggtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaa 255  Q
    ||||| ||| ||| ||| |||||||||| |||||| | ||| |||||||||||||  | | ||||||| ||||| | ||||||| ||||| || ||| ||    
T  1545 gataatgtgatgacatatgcggatgatatagagtatttatgaggagtcctataaccgtgaaagagagtgatgactattaatatt-tatatgtggaaataa 1447  T
Q  256 attactacgatgggaaatgatgagtttgtattataataatgatgagaatgatgatgtc 313  Q
    ||||| || |||| |||||||||| || ||||||||||||||||||||||| ||||||    
T  1446 attacaacaatggaaaatgatgaggttatattataataatgatgagaatgacgatgtc 1389  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 275
Target Start/End: Original strand, 1567041 - 1567154
Alignment:
Q  162 gtggtgatataagcggatgataaagagtaatgatggggagtcctataactataacagagagtaatgacgagtaatattatatatatgtaaagaaattact 261  Q
    |||||||||||| |||  |||| || ||||| ||| ||| || ||||| | | ||| ||||| ||||||| | |||||||||||||||||| |||| | |    
T  1567041 gtggtgatataaacggtggatagagggtaataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaat 1567140  T
Q  262 acgatgggaaatga 275  Q
    |||||| |||||||    
T  1567141 acgatgagaaatga 1567154  T

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