View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_43 (Length: 392)
Name: NF0755_low_43
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_43 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 33550243 - 33550454
Alignment:
| Q |
6 |
ctccaacaatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcg |
105 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550243 |
ctccaacaatatcatcattttccaaacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcg |
33550342 |
T |
|
| Q |
106 |
ctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33550343 |
ctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaa |
33550442 |
T |
|
| Q |
206 |
ggtacgttatca |
217 |
Q |
| |
|
|||||||||||| |
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|
| T |
33550443 |
ggtacgttatca |
33550454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 26230617 - 26230829
Alignment:
| Q |
6 |
ctccaacaatatcatcattttccagacaatgttgacattatttttggatactacggaaataat-ctttttaaagttataatgttcagggaagtattttgc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26230617 |
ctccaacaatatcatcattttccagacaatgttgacattatttttggatactacggaaataattctttttaaagttataatgttcagggaagtattttgc |
26230716 |
T |
|
| Q |
105 |
gctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230717 |
gctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatca |
26230816 |
T |
|
| Q |
205 |
aggtacgttatca |
217 |
Q |
| |
|
||||||||||||| |
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|
| T |
26230817 |
aggtacgttatca |
26230829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 26230909 - 26230983
Alignment:
| Q |
297 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26230909 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
26230983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 33550533 - 33550607
Alignment:
| Q |
297 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33550533 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
33550607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 6 - 217
Target Start/End: Complemental strand, 8335589 - 8335378
Alignment:
| Q |
6 |
ctccaacaatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcagggaagtattttgcg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8335589 |
ctccaacaatatcatcattttccagacaatgttgacattatttttggatactatggaaataatctttttaaagttataatgttcagggaagttttttgcg |
8335490 |
T |
|
| Q |
106 |
ctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttaaacactccaatcaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8335489 |
ctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacatttctgataatgatttcaacactccaatcaa |
8335390 |
T |
|
| Q |
206 |
ggtacgttatca |
217 |
Q |
| |
|
||||| |||||| |
|
|
| T |
8335389 |
ggtacattatca |
8335378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 8335298 - 8335224
Alignment:
| Q |
297 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
371 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8335298 |
agatgttgcccgatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgctgtgatgatg |
8335224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 4684949 - 4684810
Alignment:
| Q |
78 |
gttataatgttcagggaagtattttgcgctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacattt |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4684949 |
gttataatgttcagggaagtattttgcgctactaaaataccttcttttcatagtcgtagcatgtatccagaggaagtcattatatttgatatacacattt |
4684850 |
T |
|
| Q |
178 |
ctgataatgatttaaacactccaatcaaggtacgttatca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4684849 |
ctgataatgatttaaacactccaatcaaggtacgttatca |
4684810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 4684730 - 4684656
Alignment:
| Q |
297 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4684730 |
agatgttgcccaatcattttgggacctttcttcagaacgactttcgcagtcttctaactttgtgttgtgatgatg |
4684656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 26632560 - 26632645
Alignment:
| Q |
6 |
ctccaacaatatcatcattttccagacaatgttgacattatttttggatactacggaaataatctttttaaagttataatgttcag |
91 |
Q |
| |
|
||||||||||||||||||||| | || |||||||||||| |||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
26632560 |
ctccaacaatatcatcatttttccgataatgttgacattctttttggataatataaaaataatctttttaaagttataatgttcag |
26632645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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