View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0755_low_44 (Length: 386)
Name: NF0755_low_44
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_44 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 41281029 - 41281381
Alignment:
| Q |
20 |
gaacctgtgtaaatagggagtaatcagcctttgattgttgaaaaccaatttcttgaattacacaagaaaaacgttggaaccaactgcgagatgcttgctt |
119 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41281029 |
gaacctgtgtaaatagtgagtaatcagcctttgattgttgaaaaccaatttcttgaattgcacaagaaaaacgttggaaccaactacgagatgcttgctt |
41281128 |
T |
|
| Q |
120 |
tagcccataaagtgacttgtggagtcgacaaactacattctccccctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaaccaaatcgccg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41281129 |
tagcccataaagtgacttgtggagtcgacaaactacattctccccctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaaccaaatcgccg |
41281228 |
T |
|
| Q |
220 |
tgaagaaatgcattttgtacatccatttggtgtaaaggccaatttcgaactgcagcaacagctaataagcatcgaacagtggtcaattttgcaaccggag |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41281229 |
tgaagaaatgcattttgtacatccatttggtgtaaaggccaatttcgaattgcagcaacagctaataagcatcgaacagtggttaattttgcaaccggag |
41281328 |
T |
|
| Q |
320 |
caaaagtatccttataatcaatgccttcacgttgggttaaccctttggcaaca |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41281329 |
caaaagtatccttataatcaatgccttcacgttgggtgaaccctttggcaaca |
41281381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 9675665 - 9675532
Alignment:
| Q |
109 |
gatgcttgctttagcccataaagtgacttgtggagtcgacaaactacattctccccctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaa |
208 |
Q |
| |
|
|||||||| || || |||||||||||||| | ||| ||||| || || |||||||||||||| | || ||| || |||||| |||||| ||| |||| |
|
|
| T |
9675665 |
gatgcttgtttgagtccataaagtgacttattgagccgacatacaacgttctccccctgtcggcgaagaccaggtggaggctccatgtacactaattcat |
9675566 |
T |
|
| Q |
209 |
ccaaatcgccgtgaagaaatgcattttgtacatc |
242 |
Q |
| |
|
|||||| || |||||||| |||||||| ||||| |
|
|
| T |
9675565 |
gcaaatcaccatgaagaaaggcattttgcacatc |
9675532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 25068560 - 25068427
Alignment:
| Q |
109 |
gatgcttgctttagcccataaagtgacttgtggagtcgacaaactacattctccccctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaa |
208 |
Q |
| |
|
|||||||| || || |||||||||||||| | ||| ||||| || || |||||||||||||| | || ||| || |||||| |||||| ||| |||| |
|
|
| T |
25068560 |
gatgcttgtttgagtccataaagtgacttattgagccgacatacaacgttctccccctgtcggcgaagaccaggtggaggctccatgtacactaattcat |
25068461 |
T |
|
| Q |
209 |
ccaaatcgccgtgaagaaatgcattttgtacatc |
242 |
Q |
| |
|
|||||| || |||||||| |||||||| ||||| |
|
|
| T |
25068460 |
gcaaatcaccatgaagaaaggcattttgcacatc |
25068427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 5289992 - 5289948
Alignment:
| Q |
217 |
ccgtgaagaaatgcattttgtacatccatttggtgtaaaggccaa |
261 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
5289992 |
ccgtgaagaaatgcatttttgacatccatttgatgtaacggccaa |
5289948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5822 times since January 2019
Visitors: 4859