View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0755_low_46 (Length: 375)

Name: NF0755_low_46
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0755_low_46
NF0755_low_46
[»] chr3 (4 HSPs)
chr3 (1-354)||(42898283-42898624)
chr3 (133-169)||(32711271-32711307)
chr3 (132-169)||(2312985-2313022)
chr3 (136-169)||(42896185-42896218)
[»] chr5 (3 HSPs)
chr5 (133-169)||(37322613-37322649)
chr5 (133-166)||(4409398-4409431)
chr5 (133-169)||(1023715-1023751)
[»] chr4 (2 HSPs)
chr4 (133-169)||(30206537-30206573)
chr4 (133-169)||(26066412-26066448)
[»] chr8 (3 HSPs)
chr8 (135-169)||(27789322-27789356)
chr8 (137-169)||(8337212-8337244)
chr8 (133-169)||(8793762-8793798)
[»] chr7 (1 HSPs)
chr7 (133-169)||(39153356-39153392)
[»] chr6 (3 HSPs)
chr6 (133-169)||(24986001-24986037)
chr6 (133-169)||(28630796-28630832)
chr6 (137-169)||(30714128-30714160)
[»] chr2 (2 HSPs)
chr2 (133-169)||(7943508-7943544)
chr2 (133-165)||(45651049-45651081)
[»] chr1 (3 HSPs)
chr1 (133-169)||(11386198-11386234)
chr1 (133-169)||(49944876-49944912)
chr1 (133-169)||(50155367-50155403)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 42898283 - 42898624
Alignment:
Q  1 agtcttaatatcgcctcctgcactatcagctgggaaaacactctgcaagcaaagacagatatttgcatgaaacatatgtatcactttcaaatgcagtgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42898283 agtcttaatatcgcctcctgcactatcagctgggaaaacactctgcaagcaaagacagatatttgcatgaaacatatgtatcactttcaaattcagtgaa 42898382  T
Q  101 ccaagctaatattttactctctatattatacactatattatagaccagatacatcaattattcaatgaaaaaactattctaatgacctctgaaatcaatt 200  Q
    ||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898383 ccaagctaatattttactctctat------------attatagaccagatacatcaattattcaatgaaaaaactattctaatgacctctgaaatcaatt 42898470  T
Q  201 catgactcatgcatgaaaattgaatactgtctgtgaaattggaaagaaaataatggagcaaggaatgcacttacaggatccaatgaaaggtgcttggaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898471 catgactcatgcatgaaaattgaatactgtctgtgaaattggaaagaaaataatggagcaaggaatgcacttacaggatccaatgaaaggtgcttggaga 42898570  T
Q  301 gagccaaaaccagtgatttctttctgttgtcaacggaagccatttgtgatgatg 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898571 gagccaaaaccagtgatttctttctgttgtcaacggaagccatttgtgatgatg 42898624  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 32711271 - 32711307
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaatgaa 169  Q
    |||||||||||||||||||||||||||||||||||||    
T  32711271 ctatattatagaccagatacatcaattattcaatgaa 32711307  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 2312985 - 2313022
Alignment:
Q  132 actatattatagaccagatacatcaattattcaatgaa 169  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  2312985 actatattatatatcagatacatcaattattcaatgaa 2313022  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 42896218 - 42896185
Alignment:
Q  136 tattatagaccagatacatcaattattcaatgaa 169  Q
    ||||||||||||||||||||| ||||||||||||    
T  42896218 tattatagaccagatacatcagttattcaatgaa 42896185  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 37322613 - 37322649
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaatgaa 169  Q
    ||||||| |||||||||||||||||||||||||||||    
T  37322613 ctatattttagaccagatacatcaattattcaatgaa 37322649  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 4409398 - 4409431
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaat 166  Q
    ||||||||||||||| ||||||||||||||||||    
T  4409398 ctatattatagaccaaatacatcaattattcaat 4409431  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 1023715 - 1023751
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaatgaa 169  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  1023715 ctatattatagaccacatacatcatttattcaatgaa 1023751  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 30206537 - 30206573
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaatgaa 169  Q
    |||||||||| ||||||||||||||||||||||||||    
T  30206537 ctatattataaaccagatacatcaattattcaatgaa 30206573  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 26066448 - 26066412
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaatgaa 169  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  26066448 ctatattctagaccggatacatcaattattcaatgaa 26066412  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 27789356 - 27789322
Alignment:
Q  135 atattatagaccagatacatcaattattcaatgaa 169  Q
    |||||||| ||||||||||||||||||||||||||    
T  27789356 atattatataccagatacatcaattattcaatgaa 27789322  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 8337212 - 8337244
Alignment:
Q  137 attatagaccagatacatcaattattcaatgaa 169  Q
    ||||||||||||| |||||||||||||||||||    
T  8337212 attatagaccagacacatcaattattcaatgaa 8337244  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 8793798 - 8793762
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaatgaa 169  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  8793798 ctatattatagaccaaatacatcaattactcaatgaa 8793762  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 39153356 - 39153392
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaatgaa 169  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  39153356 ctatattatagaccaaatacatcaattactcaatgaa 39153392  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 24986001 - 24986037
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaatgaa 169  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  24986001 ctatattatagaccatatacatcaattatccaatgaa 24986037  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 28630832 - 28630796
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaatgaa 169  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  28630832 ctatattatagacaagatacatcaattactcaatgaa 28630796  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 30714128 - 30714160
Alignment:
Q  137 attatagaccagatacatcaattattcaatgaa 169  Q
    ||||||||||||| |||||||||||||||||||    
T  30714128 attatagaccagaaacatcaattattcaatgaa 30714160  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 7943508 - 7943544
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaatgaa 169  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  7943508 ctatattgtagacaagatacatcaattattcaatgaa 7943544  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 45651049 - 45651081
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaa 165  Q
    ||||| |||||||||||||||||||||||||||    
T  45651049 ctataatatagaccagatacatcaattattcaa 45651081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 11386234 - 11386198
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaatgaa 169  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  11386234 ctatattctagaccagaaacatcaattattcaatgaa 11386198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 49944912 - 49944876
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaatgaa 169  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  49944912 ctatattctagacaagatacatcaattattcaatgaa 49944876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 50155367 - 50155403
Alignment:
Q  133 ctatattatagaccagatacatcaattattcaatgaa 169  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  50155367 ctatattatagaccaaatacatcaattactcaatgaa 50155403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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