View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_54 (Length: 357)
Name: NF0755_low_54
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_54 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 13755359 - 13755696
Alignment:
| Q |
19 |
ggacatcatcatggccaattatatgttccccctctgcattcagtgcatcaattacatgtcttgctaatttcatgaaataactgtcaagcatgaaaaatca |
118 |
Q |
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| T |
13755359 |
ggacctcatcatggccaattatatgttccccctctgcattcagtgcatcaattacatgtcttgctaatttcatgaaataactgtcaagcatgaaaaatca |
13755458 |
T |
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| Q |
119 |
actgttttagaaataatcataaattgcataagatttaagctatacaagccaaacgctcaacgctcacaccctaggaatnnnnnnnntaaatcaatcaaat |
218 |
Q |
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| T |
13755459 |
actgttttagaaataatcataaattgcataagatttaagctataccagccaaacgctcaacgctcacaccctaggaataaaaaaaataactcaatcaaat |
13755558 |
T |
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| Q |
219 |
gaccactttttaacagatnnnnnnnncttctctatatgttcatactatgattataaaagaaaaaccttagacctgatagtaattacaaaatacaataaaa |
318 |
Q |
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| T |
13755559 |
gaccactttttaacggataaaaaaaacttctcaatatattcatactaagattataaaagcaaaa-cttagacctgatagtaattacaaaatacaataaaa |
13755657 |
T |
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| Q |
319 |
cttgctaattgaactctaaaatgacattaaaaaccctat |
357 |
Q |
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| T |
13755658 |
cttgctaattgaactctaaaatgacattaaaaaccctat |
13755696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 13768760 - 13769097
Alignment:
| Q |
19 |
ggacatcatcatggccaattatatgttccccctctgcattcagtgcatcaattacatgtcttgctaatttcatgaaataactgtcaagcatgaaaaatca |
118 |
Q |
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| T |
13768760 |
ggacctcatcatggccaattatatgttccccctctgcattcagtgcatcaattacatgtcttgctaatttcatgaaataactgtcaagcatgaaaaatca |
13768859 |
T |
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| Q |
119 |
actgttttagaaataatcataaattgcataagatttaagctatacaagccaaacgctcaacgctcacaccctaggaatnnnnnnnntaaatcaatcaaat |
218 |
Q |
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| T |
13768860 |
actgttttagaaataatcataaattgcataagatttaagctataccagccaaacgctcaacgctcacaccctaggaataaaaaaaataactcaatcaaat |
13768959 |
T |
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| Q |
219 |
gaccactttttaacagatnnnnnnnncttctctatatgttcatactatgattataaaagaaaaaccttagacctgatagtaattacaaaatacaataaaa |
318 |
Q |
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| T |
13768960 |
gaccactttttaacggataaaaaaaacttctcaatatattcatactaagattataaaagcaaaa-cttagacctgatagtaattacaaaatacaataaaa |
13769058 |
T |
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| Q |
319 |
cttgctaattgaactctaaaatgacattaaaaaccctat |
357 |
Q |
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| T |
13769059 |
cttgctaattgaactctaaaatgacattaaaaaccctat |
13769097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 13733530 - 13733647
Alignment:
| Q |
54 |
gcattcagtgcatcaattacatgtcttgctaatttca-tgaaataactgtcaagcatgaaaaatcaactgttttagaaataatcataaattgcataagat |
152 |
Q |
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| T |
13733530 |
gcattcagtgcatcaattacttgtcttgccgacttcactgaaataactgccaagcatgaaaaatcaactgttttagaaataatcataaattgcataagct |
13733629 |
T |
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| Q |
153 |
ttaagctatacaagccaa |
170 |
Q |
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| T |
13733630 |
ttaaactacacaagccaa |
13733647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 13741517 - 13741649
Alignment:
| Q |
38 |
tatatgttccccctctgcattcagtgcatcaattacatgtcttgctaatttca-tgaaataactgtcaagcatgaaaaatcaactgttttagaaataatc |
136 |
Q |
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| T |
13741517 |
tatatgttccccctctgcattcagtgcatcaattagatgacttgctgatttcgctggaagaaccgtcaagcacaaaaaataaacagttttagaaataatc |
13741616 |
T |
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| Q |
137 |
ataaattgcataagatttaagctatacaagcca |
169 |
Q |
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| T |
13741617 |
ataaattgtgtaagatttaagctacacaagcca |
13741649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 16752046 - 16752092
Alignment:
| Q |
305 |
aaaatacaataaaacttgctaattgaactctaaaatgacattaaaaa |
351 |
Q |
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| T |
16752046 |
aaaatacaatcaaacttgctaaatgaactctaaaataacactaaaaa |
16752092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 49683443 - 49683398
Alignment:
| Q |
305 |
aaaatacaataaaacttgctaattgaactctaaaatgacattaaaa |
350 |
Q |
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| T |
49683443 |
aaaatacaaataaacttgctacttgaactctaaaatgactttaaaa |
49683398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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