View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0755_low_55 (Length: 355)

Name: NF0755_low_55
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0755_low_55
NF0755_low_55
[»] chr3 (25 HSPs)
chr3 (76-332)||(22530202-22530459)
chr3 (76-332)||(29549202-29549459)
chr3 (82-283)||(6921069-6921270)
chr3 (11-81)||(17208536-17208606)
chr3 (31-81)||(6156722-6156772)
chr3 (19-81)||(14442187-14442249)
chr3 (31-81)||(2841496-2841546)
chr3 (31-81)||(14520458-14520508)
chr3 (38-81)||(3527154-3527197)
chr3 (36-81)||(22841274-22841319)
chr3 (37-81)||(14641544-14641588)
chr3 (41-81)||(54875474-54875514)
chr3 (31-81)||(5215659-5215709)
chr3 (36-81)||(12917301-12917346)
chr3 (40-81)||(14152398-14152439)
chr3 (36-81)||(45803326-45803371)
chr3 (37-81)||(6159417-6159461)
chr3 (31-71)||(13185917-13185957)
chr3 (31-71)||(19568198-19568238)
chr3 (37-81)||(29907651-29907695)
chr3 (37-81)||(29948817-29948861)
chr3 (37-81)||(29997971-29998015)
chr3 (31-71)||(40808018-40808058)
chr3 (31-71)||(40812855-40812895)
chr3 (31-71)||(44274440-44274480)
[»] chr4 (16 HSPs)
chr4 (88-283)||(54874533-54874728)
chr4 (88-254)||(33096113-33096279)
chr4 (34-82)||(9622500-9622548)
chr4 (31-81)||(14631147-14631197)
chr4 (31-81)||(16296950-16297000)
chr4 (37-81)||(10273395-10273439)
chr4 (38-81)||(55583208-55583251)
chr4 (27-81)||(13847213-13847267)
chr4 (211-292)||(13154250-13154330)
chr4 (37-81)||(9639022-9639066)
chr4 (41-81)||(12424290-12424330)
chr4 (40-81)||(26446219-26446260)
chr4 (31-71)||(15115244-15115284)
chr4 (35-75)||(15239810-15239850)
chr4 (31-71)||(19434549-19434589)
chr4 (37-81)||(25513863-25513907)
[»] scaffold0231 (1 HSPs)
scaffold0231 (2-81)||(17482-17561)
[»] chr5 (8 HSPs)
chr5 (2-81)||(18744886-18744965)
chr5 (2-71)||(6551251-6551320)
chr5 (2-71)||(21617889-21617958)
chr5 (37-81)||(32607312-32607356)
chr5 (36-81)||(16063763-16063808)
chr5 (18-71)||(20469153-20469206)
chr5 (37-81)||(21398640-21398684)
chr5 (41-81)||(23199207-23199247)
[»] chr8 (14 HSPs)
chr8 (12-81)||(21399729-21399798)
chr8 (12-81)||(21794222-21794291)
chr8 (2-71)||(45469180-45469249)
chr8 (17-71)||(6101729-6101783)
chr8 (37-81)||(22208281-22208325)
chr8 (37-81)||(22345176-22345220)
chr8 (37-81)||(22356836-22356880)
chr8 (19-71)||(36727016-36727068)
chr8 (31-81)||(18816285-18816335)
chr8 (11-71)||(23899957-23900017)
chr8 (36-81)||(22610262-22610307)
chr8 (40-81)||(36732411-36732452)
chr8 (41-81)||(18834434-18834474)
chr8 (45-81)||(22483798-22483834)
[»] chr7 (27 HSPs)
chr7 (2-71)||(48807286-48807355)
chr7 (2-71)||(14218856-14218925)
chr7 (31-81)||(708419-708469)
chr7 (31-81)||(15575639-15575689)
chr7 (31-81)||(18874655-18874705)
chr7 (31-81)||(20252172-20252222)
chr7 (34-80)||(47095465-47095511)
chr7 (2-71)||(16078352-16078421)
chr7 (37-81)||(58409-58453)
chr7 (37-81)||(38299760-38299804)
chr7 (31-81)||(3287756-3287806)
chr7 (37-79)||(13744506-13744548)
chr7 (36-81)||(18570659-18570704)
chr7 (36-81)||(33556100-33556145)
chr7 (37-81)||(19195623-19195667)
chr7 (41-81)||(25943279-25943319)
chr7 (30-81)||(8488083-8488134)
chr7 (30-81)||(8513742-8513793)
chr7 (34-81)||(36300634-36300681)
chr7 (19-81)||(15720791-15720853)
chr7 (205-254)||(16541658-16541707)
chr7 (205-254)||(16623955-16624004)
chr7 (40-81)||(43745668-43745709)
chr7 (37-81)||(8930761-8930805)
chr7 (37-81)||(13315078-13315122)
chr7 (31-71)||(20586374-20586414)
chr7 (41-81)||(43276744-43276784)
[»] chr2 (11 HSPs)
chr2 (2-71)||(3539859-3539928)
chr2 (31-81)||(21315466-21315516)
chr2 (31-81)||(21335256-21335306)
chr2 (37-81)||(23801508-23801552)
chr2 (40-81)||(23610638-23610679)
chr2 (108-289)||(24733970-24734151)
chr2 (19-59)||(28652530-28652570)
chr2 (2-59)||(18387704-18387761)
chr2 (37-81)||(149497-149541)
chr2 (37-81)||(21369305-21369349)
chr2 (31-71)||(24516208-24516248)
[»] scaffold0207 (1 HSPs)
scaffold0207 (11-71)||(13362-13422)
[»] scaffold0004 (2 HSPs)
scaffold0004 (2-81)||(111372-111451)
scaffold0004 (37-81)||(75949-75993)
[»] chr6 (9 HSPs)
chr6 (2-52)||(23501713-23501763)
chr6 (37-81)||(10446229-10446273)
chr6 (40-81)||(21683074-21683115)
chr6 (37-80)||(19825482-19825525)
chr6 (19-81)||(18982584-18982646)
chr6 (39-81)||(29045283-29045325)
chr6 (31-71)||(15890702-15890742)
chr6 (37-81)||(23658101-23658145)
chr6 (19-51)||(25601308-25601340)
[»] scaffold0411 (1 HSPs)
scaffold0411 (14-59)||(13390-13435)
[»] scaffold0056 (2 HSPs)
scaffold0056 (2-71)||(67143-67212)
scaffold0056 (40-81)||(18287-18328)
[»] chr1 (16 HSPs)
chr1 (2-71)||(13302924-13302993)
chr1 (31-81)||(50544884-50544934)
chr1 (16-71)||(21239024-21239079)
chr1 (36-81)||(34392780-34392825)
chr1 (37-81)||(8306618-8306662)
chr1 (37-81)||(35895111-35895155)
chr1 (37-81)||(38056668-38056712)
chr1 (37-81)||(45499554-45499598)
chr1 (36-75)||(7703140-7703179)
chr1 (39-81)||(17901792-17901834)
chr1 (36-81)||(20588650-20588695)
chr1 (36-81)||(20593188-20593233)
chr1 (31-71)||(7051912-7051952)
chr1 (41-81)||(22145666-22145706)
chr1 (19-71)||(24723329-24723381)
chr1 (37-81)||(28476730-28476774)
[»] scaffold1186 (1 HSPs)
scaffold1186 (31-81)||(2032-2082)
[»] scaffold0005 (1 HSPs)
scaffold0005 (31-81)||(186186-186236)
[»] scaffold0026 (1 HSPs)
scaffold0026 (2-59)||(146757-146814)
[»] scaffold0676 (1 HSPs)
scaffold0676 (37-81)||(2893-2937)
[»] scaffold0220 (1 HSPs)
scaffold0220 (37-81)||(13961-14005)
[»] scaffold0594 (1 HSPs)
scaffold0594 (31-81)||(2259-2309)
[»] scaffold0108 (1 HSPs)
scaffold0108 (19-81)||(6430-6492)
[»] scaffold0149 (1 HSPs)
scaffold0149 (30-71)||(21633-21674)
[»] scaffold0139 (1 HSPs)
scaffold0139 (40-81)||(23546-23587)
[»] scaffold0048 (1 HSPs)
scaffold0048 (34-79)||(68719-68764)
[»] scaffold0878 (1 HSPs)
scaffold0878 (37-81)||(3418-3462)
[»] scaffold0853 (1 HSPs)
scaffold0853 (41-81)||(2454-2494)
[»] scaffold0431 (1 HSPs)
scaffold0431 (41-81)||(5645-5685)
[»] scaffold0328 (1 HSPs)
scaffold0328 (37-81)||(18636-18680)
[»] scaffold0174 (2 HSPs)
scaffold0174 (37-81)||(19868-19912)
scaffold0174 (37-81)||(5466-5510)
[»] scaffold0061 (2 HSPs)
scaffold0061 (37-81)||(14582-14626)
scaffold0061 (37-81)||(23640-23684)
[»] scaffold0031 (1 HSPs)
scaffold0031 (37-81)||(127339-127383)
[»] scaffold0098 (1 HSPs)
scaffold0098 (31-81)||(40119-40169)
[»] scaffold0205 (1 HSPs)
scaffold0205 (34-79)||(5609-5653)
[»] scaffold0086 (1 HSPs)
scaffold0086 (36-81)||(35181-35226)
[»] scaffold0037 (1 HSPs)
scaffold0037 (18-71)||(112943-112996)
[»] scaffold1941 (1 HSPs)
scaffold1941 (31-71)||(160-200)
[»] scaffold0802 (1 HSPs)
scaffold0802 (31-71)||(4699-4739)
[»] scaffold0555 (1 HSPs)
scaffold0555 (37-81)||(8742-8786)
[»] scaffold0414 (1 HSPs)
scaffold0414 (41-81)||(11160-11200)
[»] scaffold0379 (1 HSPs)
scaffold0379 (41-81)||(10959-10999)
[»] scaffold0241 (1 HSPs)
scaffold0241 (31-71)||(3204-3244)
[»] scaffold0148 (1 HSPs)
scaffold0148 (37-81)||(8856-8900)
[»] scaffold0028 (1 HSPs)
scaffold0028 (19-59)||(3030-3070)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 76 - 332
Target Start/End: Original strand, 22530202 - 22530459
Alignment:
Q  76 ggttgtcaatcttctgtcaataacgactggtcgaattggttggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgt 175  Q
    |||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  22530202 ggttctcaatcttctctcaataacgactggtcaaattggttggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtatgggaaagaagt 22530301  T
Q  176 tgggggtaaactttcaagaggatatttaaaataggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcg 275  Q
    |||||||||| || |||| ||||||||  ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||    
T  22530302 tgggggtaaatttccaaggggatatttctaataggtttgatgttctgtcaggtgtgggaagaaaaaataaagagggtaacggggaagggaagtgaggtcg 22530401  T
Q  276 agggttggtgggaggtgcgacggtg-gttttggtgtggtggagtagtagtagtgatga 332  Q
    ||| ||||||||||||| || ||||  ||||||||||||||||| ||||| |||||||    
T  22530402 aggattggtgggaggtgtgagggtgttttttggtgtggtggagtggtagtggtgatga 22530459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 76 - 332
Target Start/End: Complemental strand, 29549459 - 29549202
Alignment:
Q  76 ggttgtcaatcttctgtcaataacgactggtcgaattggttggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgt 175  Q
    |||| |||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||| |    
T  29549459 ggttctcaatcatctattaataatgactggtcgaattggttggttcttcatggaagtagtaaggctatttcggatgatgttaaaggaatgggaaagatat 29549360  T
Q  176 tgggggtaaactttcaagaggatatttaaaataggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcg 275  Q
    ||||||| || ||||||| |||||   ||| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  29549359 tgggggtgaattttcaaggggatacacaaagtaggtttaatgtattgtcaggtgcgggaagaaaaaataaagagggtgatggggaagagaagtgaggccg 29549260  T
Q  276 agggttggtgggaggtg-cgacggtggttttggtgtggtggagtagtagtagtgatga 332  Q
    |||||||||||||||||  || ||||| ||||||||||| |||| || || |||||||    
T  29549259 agggttggtgggaggtgtggagggtgggtttggtgtggtagagtggtcgtggtgatga 29549202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 283
Target Start/End: Original strand, 6921069 - 6921270
Alignment:
Q  82 caatcttctgtcaataacgactggtcgaattggttggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgttggggg 181  Q
    ||||| ||||| ||||| ||||||||||||||||| || |||||||| | ||| |||||| | |||||||||||||  ||  |||| ||| || || |||    
T  6921069 caatcatctgttaataatgactggtcgaattggttagtacttcatggtaatagcaaggctttatcggatgatgttagggggatgggtaagttggtgaggg 6921168  T
Q  182 taaactttcaagaggatatttaaaataggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcgagggtt 281  Q
    | || ||||||| ||||| | |||||||||||||||| |||||||| || || |||||||||||||||||||| || | |||||  | ||||||||||||    
T  6921169 tgaattttcaaggggataatcaaaataggtttgatgtgttgtcaggagctggtagaaaaaataaagagggtgatggtggagagagttaaggtcgagggtt 6921268  T
Q  282 gg 283  Q
    ||    
T  6921269 gg 6921270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 17208606 - 17208536
Alignment:
Q  11 cagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  17208606 cagagaagagaacctttcaatcgatcaatctaaggtaagggtgggactagctttctctaataatgagttgt 17208536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 6156772 - 6156722
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  6156772 tcgatcaatctaaggtaagggtgggactagctttctctaataatgggttgt 6156722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 14442249 - 14442187
Alignment:
Q  19 agaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||| ||| ||||||||||||||||||| ||||||||||| | ||||||||||||||    
T  14442249 agaacctttcgatcaatcaatctaaggtaagggtgggactagctttctgtaataatgggttgt 14442187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 2841496 - 2841546
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  2841496 tcgatcaatctaaggtaagggtgtgactagctttctctaataatgggttgt 2841546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 14520508 - 14520458
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||||||||    
T  14520508 tcgatcaatctaaggtaagggtgggactagctttctttaataatgggttgt 14520458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 3527154 - 3527197
Alignment:
Q  38 atctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||    
T  3527154 atctaaggtaagggtgggactagctttctctaataatgggttgt 3527197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 22841274 - 22841319
Alignment:
Q  36 caatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||||    
T  22841274 caatctaatgtaagggtgggactagctttctctaataatgggttgt 22841319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 14641544 - 14641588
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||||    
T  14641544 aatctaaggtaagggtgggattagctttctctaataatgggttgt 14641588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 54875474 - 54875514
Alignment:
Q  41 taaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  54875474 taaggtaagggtgggactagctttctctaataatgggttgt 54875514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 5215709 - 5215659
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||| |||||||||||| | ||||||||| |||||||||| |||||    
T  5215709 tcgatcaatataaggtaagggtggcactagctttctctaataatgagttgt 5215659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 12917301 - 12917346
Alignment:
Q  36 caatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||| ||||||| |||||| |||| ||||||||||||||||    
T  12917301 caatctaagataagggtgggactaactttctctaataatgggttgt 12917346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 14152398 - 14152439
Alignment:
Q  40 ctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||| ||||||||||| |||||||||| |||||    
T  14152398 ctaaggtaagggtgggactagctttctctaataatgagttgt 14152439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 45803326 - 45803371
Alignment:
Q  36 caatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||| || ||||| ||||||||||| ||||||||||||||||    
T  45803326 caatctaaagttagggtgggactagctttctctaataatgggttgt 45803371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 6159461 - 6159417
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||  |||| ||||| ||||||||||||||||    
T  6159461 aatctaaggtaagggtgagactcgctttctctaataatgggttgt 6159417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 13185957 - 13185917
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  13185957 tcgatcaatctaaggtaagggtgggactaactttctctaat 13185917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 19568198 - 19568238
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  19568198 tcgatcaatctaaggtaagggtgggactaactttctctaat 19568238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 29907695 - 29907651
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| | ||||| ||||||||    
T  29907695 aatctaaggtaagggtgggactagctttctttaatattgggttgt 29907651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 29948861 - 29948817
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| | ||||| ||||||||    
T  29948861 aatctaaggtaagggtgggactagctttctttaatattgggttgt 29948817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 29998015 - 29997971
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| | ||||| ||||||||    
T  29998015 aatctaaggtaagggtgggactagctttctttaatattgggttgt 29997971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 40808058 - 40808018
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  40808058 tcgatcaatctaaggtaagggtgggactaactttctctaat 40808018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 40812895 - 40812855
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  40812895 tcgatcaatctaaggtaagggtgggactaactttctctaat 40812855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 44274480 - 44274440
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  44274480 tcgatcaatctaaggtaagggtgggactaactttctctaat 44274440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 88 - 283
Target Start/End: Complemental strand, 54874728 - 54874533
Alignment:
Q  88 tctgtcaataacgactggtcgaattggttggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgttgggggtaaact 187  Q
    ||||| ||| |||||||||||| |||||| || |||||||| | ||| |||||| | |||||||||||||  ||  |||||||| |  ||||||| || |    
T  54874728 tctgttaattacgactggtcgagttggttagtacttcatggtaatagcaaggctttatcggatgatgttagggggatgggaaagttagtgggggtgaatt 54874629  T
Q  188 ttcaagaggatatttaaaataggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcgagggttgg 283  Q
    |||||| ||||||| |||||||||||||||| ||||||||||  ||||||||||||||||||| ||| || | ||||| || ||| ||||||||||    
T  54874628 ttcaaggggatattcaaaataggtttgatgtgttgtcaggtgttggaagaaaaaataaagaggttgatggtggagagaggtaaggccgagggttgg 54874533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 254
Target Start/End: Original strand, 33096113 - 33096279
Alignment:
Q  88 tctgtcaataacgactggtcgaattggttggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgttgggggtaaact 187  Q
    ||||| ||||| ||||||  ||||||||||| ||||||||||||| || ||| |||||| | ||| ||||  | | |||||||| || ||||| | || |    
T  33096113 tctgttaataatgactggatgaattggttggctcttcatggaagtggtgaggttatgtcagctgacgttagggatttgggaaaggtggtggggttgaatt 33096212  T
Q  188 ttcaagaggatatttaaaataggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtga 254  Q
    |||||| |||||   | |||  ||| ||||| |||||||||||||||||||||||||||||||||||    
T  33096213 ttcaaggggataagaataatcagttcgatgtgttgtcaggtgcgggaagaaaaaataaagagggtga 33096279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 9622548 - 9622500
Alignment:
Q  34 atcaatctaaggtaagggtcggactagctttttctaataatgggttgtc 82  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  9622548 atcaatctaaggtaagggtgggactagctttctctaataatgggttgtc 9622500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 14631197 - 14631147
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  14631197 tcgatcaatctaaggtaagggtgagactagctttctctaataatgggttgt 14631147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 16297000 - 16296950
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  16297000 tcgatcaatctaaggtaagggtgggactagctttctctaataatgagttgt 16296950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 10273439 - 10273395
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  10273439 aatctaaggtaagggtgggactagctttctctaataatgggttgt 10273395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 55583251 - 55583208
Alignment:
Q  38 atctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||    
T  55583251 atctaaggtaagggtgggactagctttctctaataatgggttgt 55583208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 13847267 - 13847213
Alignment:
Q  27 tcaatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||| || |||||||||||||  |||||||||| ||||||||||||||||    
T  13847267 tcaatcgattaacctaaggtaagggtgagactagctttctctaataatgggttgt 13847213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 13154250 - 13154330
Alignment:
Q  211 tttgatgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcgagggttggtgggaggtg 292  Q
    |||||||| |||||||| | ||||||||||||||||||||| || ||| ||| ||||| ||| | |||||||||| ||||||    
T  13154250 tttgatgtgttgtcaggggtgggaagaaaaaataaagagggagatgggaaagggaagt-aggccaagggttggtgtgaggtg 13154330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 9639066 - 9639022
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||    
T  9639066 aatctaaggtaagggtgggactagctttctctaataatgagttgt 9639022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 12424290 - 12424330
Alignment:
Q  41 taaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  12424290 taaggtaagggtgggactagctttctctaataatgggttgt 12424330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 26446260 - 26446219
Alignment:
Q  40 ctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||| |||||||| ||||||||||| ||||||||||||||||    
T  26446260 ctaaagtaagggtaggactagctttctctaataatgggttgt 26446219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 15115284 - 15115244
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  15115284 tcgatcaatctaaggtaagggtgggactaactttctctaat 15115244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 15239810 - 15239850
Alignment:
Q  35 tcaatctaaggtaagggtcggactagctttttctaataatg 75  Q
    ||||||||||||||||||  |||||||||| ||||||||||    
T  15239810 tcaatctaaggtaagggtgagactagctttctctaataatg 15239850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 19434549 - 19434589
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  19434549 tcgatcaatctaaggtaagggtgggactaactttctctaat 19434589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 25513907 - 25513863
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||| ||| ||||||||||| |||||||||| |||||    
T  25513907 aatctaaggtaatggtgggactagctttctctaataatgagttgt 25513863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 17482 - 17561
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17482 gaggagaaccagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaataatggattgt 17561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 18744965 - 18744886
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||| | |||||||| ||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  18744965 gaggagaaccagagaagtgaacctttcaatcgatcaatctaaggtaagggtgggactaactttctctaataatgggttgt 18744886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 6551251 - 6551320
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||| | ||||||||| ||||||||||||||||||||||||||||||||  ||||| |||| ||||||    
T  6551251 gaggagaaccagagaagataacctttcaatcgatcaatctaaggtaagggtgagactaactttctctaat 6551320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 21617889 - 21617958
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||| | |||||||||||||||||| |||||| |||||||||||||||| |||||| |||| ||||||    
T  21617889 gaggagaaccagagaagagaacctttcgatcgataaatctaaggtaagggtgggactaactttctctaat 21617958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 32607312 - 32607356
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  32607312 aatctaaggtaagggtgggactagctttctctaataatgggttgt 32607356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 16063808 - 16063763
Alignment:
Q  36 caatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||||    
T  16063808 caatctaaggtaagggtgggactacctttctctaataatgggttgt 16063763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 20469153 - 20469206
Alignment:
Q  18 gagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    ||||| ||||| ||||||||||||||||||||||| |||||| |||| ||||||    
T  20469153 gagaagctttcgatcgatcaatctaaggtaagggtgggactaactttctctaat 20469206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 21398640 - 21398684
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||||    
T  21398640 aatctaaggtaagggtgggattagctttctctaataatgggttgt 21398684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 23199207 - 23199247
Alignment:
Q  41 taaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  23199207 taaggtaagggtgggactagctttctctaataatgggttgt 23199247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 21399798 - 21399729
Alignment:
Q  12 agagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  21399798 agagaagagaacctttcatttgatcaatctaaggtaagggtgggactagctttctctaataatgggttgt 21399729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 21794291 - 21794222
Alignment:
Q  12 agagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  21794291 agagaagagaacctttcatttgatcaatctaaggtaagggtgggactagctttctctaataatgggttgt 21794222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 45469180 - 45469249
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||| |||| ||||||    
T  45469180 gaggagaaccagagaagagaacctttcaatcgatcaatctaaggtaagggtgagactaactttctctaat 45469249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 6101729 - 6101783
Alignment:
Q  17 agagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||||||||||||| ||| |||||| |||| ||||||    
T  6101729 agagaacctttcaatcgatcaatctaaggtaaaggtgggactaactttctctaat 6101783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 22208325 - 22208281
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  22208325 aatctaaggtaagggtgggactagctttctctaataatgggttgt 22208281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 22345220 - 22345176
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  22345220 aatctaaggtaagggtgggactagctttctctaataatgggttgt 22345176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 22356880 - 22356836
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  22356880 aatctaaggtaagggtgggactagctttctctaataatgggttgt 22356836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 36727016 - 36727068
Alignment:
Q  19 agaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||| ||||||    
T  36727016 agaacctttcaatcgatcaatctaaggtaagggtgagactaactttctctaat 36727068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 18816285 - 18816335
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||| |||||||||||| ||||||||||| ||||| ||||||||||    
T  18816285 tcgatcaatataaggtaagggtgggactagctttctctaaaaatgggttgt 18816335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 23899957 - 23900017
Alignment:
Q  11 cagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||| ||||| ||||| |||||||||||||||||||||||  ||||| |||| ||||||    
T  23899957 cagagaggagaagctttcgatcgatcaatctaaggtaagggtgtgactaactttctctaat 23900017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 22610262 - 22610307
Alignment:
Q  36 caatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||| |||||| |||| |||||||||| |||||    
T  22610262 caatctaaggtaagggtgggactaactttctctaataatgagttgt 22610307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 36732411 - 36732452
Alignment:
Q  40 ctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||  |||||||||| ||||||||||||||||    
T  36732411 ctaaggtaagggtgtgactagctttctctaataatgggttgt 36732452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 18834474 - 18834434
Alignment:
Q  41 taaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||| ||||||||||| ||||||||||| ||||    
T  18834474 taaggtaagggtgggactagctttctctaataatggattgt 18834434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 22483834 - 22483798
Alignment:
Q  45 gtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  22483834 gtaagggtgggactagctttctctaataatgggttgt 22483798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 48807286 - 48807355
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  48807286 gaggagaaccagagaagagaacctttcaatcgatcaatctaaggtaagggtgggactaactttctctaat 48807355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 14218856 - 14218925
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||  ||||| |||| ||||||    
T  14218856 gaggagaatcagagaagagaacctttcaatcgatcaatctaaggtaagggtgagactaactttctctaat 14218925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 708419 - 708469
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  708419 tcgatcaatctaaggtaggggtgggactagctttctctaataatgggttgt 708469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 15575639 - 15575689
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||||    
T  15575639 tcgatcaatctaaggtaggggtgggactagctttctctaataatgggttgt 15575689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 18874655 - 18874705
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  18874655 tcgatcaatctaaggtaagggtgagactagctttctctaataatgggttgt 18874705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 20252172 - 20252222
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  20252172 tcgatcaatctaaggtaagggtaggactagctttctctaataatgagttgt 20252222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 47095511 - 47095465
Alignment:
Q  34 atcaatctaaggtaagggtcggactagctttttctaataatgggttg 80  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  47095511 atcaatctaaggtaagggtgggactagctttctctaataatgggttg 47095465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 16078421 - 16078352
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||| | ||||||||||||||||||||||| ||||  |||||||||||| |||||| |||| ||||||    
T  16078421 gaggagaaccagagaagagaacctttcaatcggtcaagataaggtaagggtgggactaactttctctaat 16078352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 58409 - 58453
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  58409 aatctaaggtaagggtgggactagctttctctaataatgggttgt 58453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 38299804 - 38299760
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  38299804 aatctaaggtaagggtgggactagctttctctaataatgggttgt 38299760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 3287806 - 3287756
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||||||||  |||||||||| ||||||||| ||||||    
T  3287806 tcgatcaatctaaggtaagggtgagactagctttctctaataataggttgt 3287756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 13744506 - 13744548
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggtt 79  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  13744506 aatctaaggtaagggtgggactagctttctctaataatgggtt 13744548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 18570704 - 18570659
Alignment:
Q  36 caatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||||  |||||||||| ||||||||||||||||    
T  18570704 caatctaaggtaagggtgagactagctttctctaataatgggttgt 18570659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 33556100 - 33556145
Alignment:
Q  36 caatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  33556100 caatctaagataagggtgggactagctttctctaataatgggttgt 33556145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 19195667 - 19195623
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||    
T  19195667 aatctaaggtaagggtgggactagctttctctaataatgagttgt 19195623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 25943319 - 25943279
Alignment:
Q  41 taaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  25943319 taaggtaagggtgggactagctttctctaataatgggttgt 25943279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 8488083 - 8488134
Alignment:
Q  30 atcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||| || ||||||||||||| |||||| |||| ||||||||||||||||    
T  8488083 atcgattaacctaaggtaagggtgggactaactttctctaataatgggttgt 8488134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 8513742 - 8513793
Alignment:
Q  30 atcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||| || ||||||||||||| |||||| |||| ||||||||||||||||    
T  8513742 atcgattaacctaaggtaagggtgggactaactttctctaataatgggttgt 8513793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 36300634 - 36300681
Alignment:
Q  34 atcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||| |||  |||||||||| ||||||||||||||||    
T  36300634 atcaatctaaggtaaaggtgagactagctttctctaataatgggttgt 36300681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 15720853 - 15720791
Alignment:
Q  19 agaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||| ||| ||| |||||| |||||||| ||| ||||||||||| ||| ||||||||||||    
T  15720853 agaaccattcgatcaatcaatttaaggtaaaggtgggactagctttctctcataatgggttgt 15720791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 16541658 - 16541707
Alignment:
Q  205 aataggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtga 254  Q
    |||| ||||||||| ||||| || ||||||||||||||||| ||||||||    
T  16541658 aatatgtttgatgtgttgtccggagcgggaagaaaaaataaggagggtga 16541707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 16624004 - 16623955
Alignment:
Q  205 aataggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtga 254  Q
    |||| ||||||||| ||||| || ||||||||||||||||| ||||||||    
T  16624004 aatatgtttgatgtgttgtccggagcgggaagaaaaaataaggagggtga 16623955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 43745709 - 43745668
Alignment:
Q  40 ctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||| ||||||||||| |||||||||| |||||    
T  43745709 ctaaggtaagggtgggactagctttctctaataatgagttgt 43745668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 8930761 - 8930805
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||  ||| ||||||||||||||||    
T  8930761 aatctaaggtaagggtgggactacatttctctaataatgggttgt 8930805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 13315078 - 13315122
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||  ||||| |||| ||||||||||||||||    
T  13315078 aatctaaggtaagggtgagactatctttctctaataatgggttgt 13315122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 20586414 - 20586374
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  20586414 tcgatcaatctaaggtaagggtgggactaactttctctaat 20586374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 43276744 - 43276784
Alignment:
Q  41 taaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||| |||||| |||| ||||||||||||||||    
T  43276744 taaggtaagggtgggactaactttctctaataatgggttgt 43276784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 3539928 - 3539859
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||| | ||||||||||||||||||||||||| |||||||||||||||| |||||| |||| ||||||    
T  3539928 gaggagaaccagagaagagaacctttcaatcgatgaatctaaggtaagggtgggactaactttctctaat 3539859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 21315466 - 21315516
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  21315466 tcgatcaatctaaggtaagggtgggactagctttctctaataatgggttgt 21315516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 21335256 - 21335306
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  21335256 tcgatcaatctaaggtaagggtgggactagctttctctaataatgggttgt 21335306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 23801552 - 23801508
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  23801552 aatctaaggtaagggtgggactagctttctctaataatgggttgt 23801508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 23610679 - 23610638
Alignment:
Q  40 ctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  23610679 ctaaggtaagggtgggactagctttctctaataatgggttgt 23610638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 289
Target Start/End: Original strand, 24733970 - 24734151
Alignment:
Q  108 gaattggttggttcttcatggaagtagtaaggctatgtcggatgatgttaaaggtgtgggaaagatgttgggggtaaactttcaagaggatatttaaaat 207  Q
    ||||||||||||||||||||| | ||| ||||  ||||| ||||||||||| ||| ||||||||    ||||| |    ||| ||| |||||   | |||    
T  24733970 gaattggttggttcttcatggtaatagcaaggtgatgtcagatgatgttaagggtatgggaaaggcagtggggttgtcttttaaaggggataagcataat 24734069  T
Q  208 aggtttgatgttttgtcaggtgcgggaagaaaaaataaagagggtgacggggaagagaagtgaggtcgagggttggtgggag 289  Q
    | |||||| || |||||||| ||||||||||||| || |||| |||| |||  || ||||| ||||||||||| | ||||||    
T  24734070 atgtttgaagtgttgtcaggagcgggaagaaaaattagagagagtgatgggttagggaagtaaggtcgagggtggttgggag 24734151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 28652530 - 28652570
Alignment:
Q  19 agaacctttcaatcgatcaatctaaggtaagggtcggacta 59  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  28652530 agaacctttcgatcgatcaatctaaggtaagggtgggacta 28652570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 18387704 - 18387761
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggtcggacta 59  Q
    |||||| | |||||| ||||| ||||| |||||||||||||| |||||||| ||||||    
T  18387704 gaggagaaccagagaggagaagctttcgatcgatcaatctaaagtaagggtgggacta 18387761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 149497 - 149541
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| | ||||||||| |||||||||| |||||    
T  149497 aatctaaggtaagggtggaactagctttctctaataatgagttgt 149541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 21369349 - 21369305
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| |||| |||||| ||||| ||||||||||    
T  21369349 aatctaaggtaagggtgggacaagctttctctaacaatgggttgt 21369305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 24516248 - 24516208
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  24516248 tcgatcaatctaaggtaagggtgggactaactttctctaat 24516208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 13362 - 13422
Alignment:
Q  11 cagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  13362 cagagaatagaacctttcaatcgatcaatctaaggtaagggtgggactaactttctctaat 13422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 111451 - 111372
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||| | |||||| ||||| ||||| |||||| |||||||||||||||| || |||||||| ||||||||||||||||    
T  111451 gaggagaaccagagaggagaagctttcgatcgattaatctaaggtaagggtggggctagctttctctaataatgggttgt 111372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 75993 - 75949
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| || |||||||||||||    
T  75993 aatctaaggtaagggtgggactagctttctccaataatgggttgt 75949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 23501763 - 23501713
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggt 52  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  23501763 gaggagaaccagagaagagaacctttcaatcgatcaatctaaggtaagggt 23501713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 10446273 - 10446229
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  10446273 aatctaaggtaagggtgggactagctttctctaataatgggttgt 10446229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 21683074 - 21683115
Alignment:
Q  40 ctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  21683074 ctaaggtaagggtgggactagctttctctaataatgggttgt 21683115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 19825482 - 19825525
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttg 80  Q
    ||||||||||||||||  |||||||||| |||||||||||||||    
T  19825482 aatctaaggtaagggtgagactagctttctctaataatgggttg 19825525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 18982646 - 18982584
Alignment:
Q  19 agaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||  |||| ||||||||||||||| ||| ||| || |||| ||||||||||||||||    
T  18982646 agaaccttgtaatcaatcaatctaaggtaacggtgggattaactttatctaataatgggttgt 18982584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 29045325 - 29045283
Alignment:
Q  39 tctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||  |||||||||| ||||||||||||||||    
T  29045325 tctaaggtaagggtgagactagctttctctaataatgggttgt 29045283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 15890702 - 15890742
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  15890702 tcgatcaatctaaggtaagggtgggactaactttctctaat 15890742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 23658145 - 23658101
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| |||||||||||  |||||||| ||||||    
T  23658145 aatctaaggtaagggtgggactagctttccctaataataggttgt 23658101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 25601308 - 25601340
Alignment:
Q  19 agaacctttcaatcgatcaatctaaggtaaggg 51  Q
    |||||||||| ||||||||||||||||||||||    
T  25601308 agaacctttcgatcgatcaatctaaggtaaggg 25601340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 13390 - 13435
Alignment:
Q  14 agaagagaacctttcaatcgatcaatctaaggtaagggtcggacta 59  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  13390 agaagagaacctttcaatcgatcaatctaaggtaagggtgggacta 13435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 67212 - 67143
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||| | ||||||||||||||||||||| |||||||||||||||| ||| |||||| |||| ||||||    
T  67212 gaggagaaccagagaagagaacctttcaattgatcaatctaaggtaaaggtgggactaactttctctaat 67143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 18328 - 18287
Alignment:
Q  40 ctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||  |||||||||| ||||||||||||||||    
T  18328 ctaaggtaagggtgtgactagctttctctaataatgggttgt 18287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 13302993 - 13302924
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||| | ||||||| ||||||||||||||||||||||||||||||||||  ||||| |||| ||||||    
T  13302993 gaggagaaccagagaatagaacctttcaatcgatcaatctaaggtaagggtgagactaactttctctaat 13302924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 50544934 - 50544884
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  50544934 tcgatcaatctaaggtaagggtgagactagctttctctaataatgggttgt 50544884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 21239024 - 21239079
Alignment:
Q  16 aagagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||| ||||||||||||||||||||||||||| |||| |||||| |||| ||||||    
T  21239024 aagataacctttcaatcgatcaatctaaggtatgggtgggactaactttctctaat 21239079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 34392825 - 34392780
Alignment:
Q  36 caatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||||  |||||||||| ||||||||||||||||    
T  34392825 caatctaaggtaagggtgtgactagctttctctaataatgggttgt 34392780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 8306662 - 8306618
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||    
T  8306662 aatctaaggtaagagtgggactagctttctctaataatgggttgt 8306618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 35895155 - 35895111
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||| |||| ||||||||||| ||||||||||||||||    
T  35895155 aatctaaggtatgggtaggactagctttatctaataatgggttgt 35895111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 38056668 - 38056712
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||    
T  38056668 aatctaaggtaagggtgggactagctttctctagtaatgggttgt 38056712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 45499598 - 45499554
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||    
T  45499598 aatctaaggtaagggtgagactagctttctctaataatgggttgt 45499554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 7703179 - 7703140
Alignment:
Q  36 caatctaaggtaagggtcggactagctttttctaataatg 75  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  7703179 caatctaaggtaagggtgggactagctttctctaataatg 7703140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 17901792 - 17901834
Alignment:
Q  39 tctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||  |||||||||| ||||||||||||||||    
T  17901792 tctaaggtaagggtgagactagctttctctaataatgggttgt 17901834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 20588695 - 20588650
Alignment:
Q  36 caatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||| |||||||||||| ||| ||||||| ||||||||||||||||    
T  20588695 caatttaaggtaagggtgggattagctttctctaataatgggttgt 20588650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 20593233 - 20593188
Alignment:
Q  36 caatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||| |||||||||||| ||| ||||||| ||||||||||||||||    
T  20593233 caatttaaggtaagggtgggattagctttctctaataatgggttgt 20593188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 7051912 - 7051952
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  7051912 tcgatcaatctaaggtaagggtgggactaactttctctaat 7051952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 22145666 - 22145706
Alignment:
Q  41 taaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||| |||||| |||| ||||||||||||||||    
T  22145666 taaggtaagggtgggactaactttctctaataatgggttgt 22145706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 24723329 - 24723381
Alignment:
Q  19 agaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||| | ||| ||||||||||||||||||| |||||| |||| ||||||    
T  24723329 agaaccttgcgatcaatcaatctaaggtaagggtgggactaactttctctaat 24723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 28476730 - 28476774
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||| ||| |||||||||| |||||    
T  28476730 aatctaaggtaagggtgggactagatttctctaataatgagttgt 28476774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 2082 - 2032
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  2082 tcgatcaatctaaggtaagggtgagactagctttctctaataatgggttgt 2032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 186186 - 186236
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  186186 tcgatcaatctaaggtaagggtgagactagctttctctaataatgggttgt 186236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 146814 - 146757
Alignment:
Q  2 gaggaggagcagagaagagaacctttcaatcgatcaatctaaggtaagggtcggacta 59  Q
    |||||| | ||||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  146814 gaggagaaccagagaaaagaacctttcaatcgatcaatctaaggtatgggtgggacta 146757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0676 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 2937 - 2893
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  2937 aatctaaggtaagggtgggactagctttctctaataatgggttgt 2893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 14005 - 13961
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||    
T  14005 aatctaaggtaagggtgggactagctttctctaataatgggttgt 13961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 2309 - 2259
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||| ||||||||||||||||| ||||||||||| | ||||||||||||||    
T  2309 tcgaccaatctaaggtaagggtgggactagctttctataataatgggttgt 2259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 6492 - 6430
Alignment:
Q  19 agaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||| | ||| |||||||||||||||||||  |||||||||| |||||||||| |||||    
T  6492 agaaccttgcgatcaatcaatctaaggtaagggtaagactagctttctctaataatgagttgt 6430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 21674 - 21633
Alignment:
Q  30 atcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  21674 atcgatcaatctaaggtaagggtgggactagctttctctaat 21633  T

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Target: scaffold0139 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 23587 - 23546
Alignment:
Q  40 ctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  23587 ctaaggtaagggtaggactagctttctctaataatgggttgt 23546  T

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Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 68719 - 68764
Alignment:
Q  34 atcaatctaaggtaagggtcggactagctttttctaataatgggtt 79  Q
    ||||||||||||||||||| |||||| |||| ||||||||||||||    
T  68719 atcaatctaaggtaagggtgggactacctttctctaataatgggtt 68764  T

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Target: scaffold0878 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 3418 - 3462
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||    
T  3418 aatctaaggtaagggtgggactagctttctctaataatgcgttgt 3462  T

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Target: scaffold0853 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 2454 - 2494
Alignment:
Q  41 taaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  2454 taaggtaagggtgggactagctttctctaataatgggttgt 2494  T

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Target: scaffold0431 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 5685 - 5645
Alignment:
Q  41 taaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  5685 taaggtaagggtgggactagctttctctaataatgggttgt 5645  T

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Target: scaffold0328 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 18636 - 18680
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||    
T  18636 aatctaaggtaagggtgggactagctttctctaataatgagttgt 18680  T

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Target: scaffold0174 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 19912 - 19868
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||    
T  19912 aatctaaggtaagggtaggactagatttctctaataatgggttgt 19868  T

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Target: scaffold0174; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 5510 - 5466
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| |||||| |||| |||||||||| |||||    
T  5510 aatctaaggtaagggtgggactacctttctctaataatgagttgt 5466  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 14582 - 14626
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||    
T  14582 aatctaaggtaagggtgagactagctttctctaataatgggttgt 14626  T

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Target: scaffold0061; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 23640 - 23684
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||    
T  23640 aatctaaggtaagggtgagactagctttctctaataatgggttgt 23684  T

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Target: scaffold0031 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 127339 - 127383
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||    
T  127339 aatctaaggtaagggtgggactagctttctctaataatggattgt 127383  T

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Target: scaffold0098 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 40169 - 40119
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||||||||||| |  ||||| |||| ||||||||||||||||    
T  40169 tcgatcaatctaaggtaaggatgcgactaactttctctaataatgggttgt 40119  T

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Target: scaffold0205 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 5609 - 5653
Alignment:
Q  34 atcaatctaaggtaagggtcggactagctttttctaataatgggtt 79  Q
    ||||||||||||||||||| |||||||| || ||||||||||||||    
T  5609 atcaatctaaggtaagggtgggactagc-ttctctaataatgggtt 5653  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 35181 - 35226
Alignment:
Q  36 caatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||| | |||||||||  |||||||||||||||    
T  35181 caatctaaggtaagggtggtactagctttccctaataatgggttgt 35226  T

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Target: scaffold0037 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 112943 - 112996
Alignment:
Q  18 gagaacctttcaatcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    ||||| ||||| ||||||||||||||| ||||||| |||||| |||| ||||||    
T  112943 gagaagctttcgatcgatcaatctaagataagggtgggactaactttctctaat 112996  T

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Target: scaffold1941 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1941
Description:

Target: scaffold1941; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 200 - 160
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  200 tcgatcaatctaaggtaagggtgggactaactttctctaat 160  T

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Target: scaffold0802 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 4699 - 4739
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  4699 tcgatcaatctaaggtaagggtgggactaactttctctaat 4739  T

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Target: scaffold0555 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 8742 - 8786
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    ||||||||||||||||  |||||||||  ||||||||||||||||    
T  8742 aatctaaggtaagggtgagactagcttactctaataatgggttgt 8786  T

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Target: scaffold0414 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 11160 - 11200
Alignment:
Q  41 taaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||| | ||||||||||| ||||||||||||||||    
T  11160 taaggtaaggatgggactagctttctctaataatgggttgt 11200  T

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Target: scaffold0379 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 10999 - 10959
Alignment:
Q  41 taaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||||||| | ||||||||| ||||||||||||||||    
T  10999 taaggtaagggtggaactagctttctctaataatgggttgt 10959  T

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Target: scaffold0241 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 3244 - 3204
Alignment:
Q  31 tcgatcaatctaaggtaagggtcggactagctttttctaat 71  Q
    |||||||||||||||||||||| |||||| |||| ||||||    
T  3244 tcgatcaatctaaggtaagggttggactaactttctctaat 3204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 8900 - 8856
Alignment:
Q  37 aatctaaggtaagggtcggactagctttttctaataatgggttgt 81  Q
    |||||||| ||||||| ||||||||||| ||||||||||| ||||    
T  8900 aatctaagttaagggtgggactagctttatctaataatggattgt 8856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 3030 - 3070
Alignment:
Q  19 agaacctttcaatcgatcaatctaaggtaagggtcggacta 59  Q
    |||||||| ||||||||||||| ||||||||||| ||||||    
T  3030 agaaccttgcaatcgatcaatccaaggtaagggtgggacta 3070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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