View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_63 (Length: 342)
Name: NF0755_low_63
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 97 - 272
Target Start/End: Complemental strand, 40280654 - 40280479
Alignment:
| Q |
97 |
ctgaatacacacgattaacatctaccacgcacctctctgctgatacacaaacaatcttgaatttaaagaagatgaagaagcatgtggatccatcatggct |
196 |
Q |
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| T |
40280654 |
ctgaatacacaccattaacatctaccacgcacctctctgctgatacacaaacaatcttgaatttaaagaagatgaagaagcatgtggatccatcatggct |
40280555 |
T |
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| Q |
197 |
tacactttcacagccatcttcatcaccaccacttcctaagcctttcccatctgaatggacaccatcatcaccccct |
272 |
Q |
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| T |
40280554 |
tacactctcacagccatcttcatcaccaccacttcctaagcctttcccatctgaatggacaccatcatcaccccct |
40280479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 40280826 - 40280654
Alignment:
| Q |
97 |
ctgaatacacacgattaacatctaccacgcacctctctgctgatacacaaacaatcttgaatttaaagaagatgaagaagcatgtggatccatcatggct |
196 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40280826 |
ctgaatacacaccattaacatctaccacgcacctctctgctgatacacaaacaatcttgaatttaaagaagatgaagaagcatgtggatccatcatggct |
40280727 |
T |
|
| Q |
197 |
tacactttcacagccatcttcatcaccaccacttcctaagcctttcccatctgaatggacaccatcatcaccc |
269 |
Q |
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| T |
40280726 |
tacactctcacagccatcttcatcaccaccacttcctaagcctttcccatctgaatggacaccatcatcaccc |
40280654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 129 - 272
Target Start/End: Original strand, 40457728 - 40457871
Alignment:
| Q |
129 |
ctctctgctgatacacaaacaatcttgaatttaaagaagatgaagaagcatgtggatccatcatggcttacactttcacagccatcttcatcaccaccac |
228 |
Q |
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||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
40457728 |
ctctctgctgatacacaaacattctttaatttaaagatgatgaagaagcatgtggatccatcttggcttacactctcacagccatcttcatcaccaccac |
40457827 |
T |
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| Q |
229 |
ttcctaagcctttcccatctgaatggacaccatcatcaccccct |
272 |
Q |
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| | ||||||||| |||||||||| |||||||||||||||||| |
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| T |
40457828 |
tccataagcctttaccatctgaatacacaccatcatcaccccct |
40457871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 40285483 - 40285424
Alignment:
| Q |
211 |
catcttcatcaccaccacttcctaagcctttcccatctgaatggacaccatcatcacccc |
270 |
Q |
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||||||||||||||||||| ||||||| ||| |||||||||| ||||||||| |||||| |
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| T |
40285483 |
catcttcatcaccaccactccctaagcatttaccatctgaatacacaccatcaacacccc |
40285424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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