View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0755_low_67 (Length: 335)
Name: NF0755_low_67
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_67 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 329
Target Start/End: Original strand, 26677327 - 26677636
Alignment:
| Q |
21 |
acatcatcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaaaccacacttccnnnnnnnnnntcaacc |
120 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |
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| T |
26677327 |
acatcatcacaagctgccataaaatccgaaactagattatccaagcctaccctgtccataccaccactcaaataccacacttccaaaaaaaaaaccaacc |
26677426 |
T |
|
| Q |
121 |
atcacgcacgcaactatctccatcacaccaatcaaacaccaataacttcgctacccttcccgttggccaccacctattttgccaccatttagacatcact |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26677427 |
atcacgcacgcaactatctccatcacaccaagcaaacaccaataacctcgctacccttcccgttggccaccacctattttgccaccatttagacatcact |
26677526 |
T |
|
| Q |
221 |
gaaaacaccgtaagaaacgattttgatgctctgtctccctgctacatcaccgccgccacataccacaaaaccgccaccacacaca-aacccgaaacccgg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
26677527 |
gaaaacaccgtaagaaacgattttgatgctccgtctccctactacatcaccgccaccacacaccacaaaaccgccaccacacacacaacccgaaacccgg |
26677626 |
T |
|
| Q |
320 |
ttcatctcac |
329 |
Q |
| |
|
||| |||||| |
|
|
| T |
26677627 |
ttcttctcac |
26677636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 304
Target Start/End: Original strand, 13980655 - 13980936
Alignment:
| Q |
27 |
tcacaagctgccacaaaatccgaaa-ctagattatccaagcctaccccgtccataccaccactcaaaaaccaca-cttccnnnnnnnnnntcaaccatca |
124 |
Q |
| |
|
|||||||| |||||| |||| |||| |||||||||||||||||||||| |||||| ||||| ||||||||||| |||| |||||| ||| |
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|
| T |
13980655 |
tcacaagccgccacagaatctgaaaactagattatccaagcctaccccatccatatcaccatgcaaaaaccacaacttc---aaaaaccctcaaccgtca |
13980751 |
T |
|
| Q |
125 |
cgcacgcaactatct----ccatcacaccaatcaaacaccaataacttcgctacccttcccgttggccaccacctattttgccaccatttagacatcact |
220 |
Q |
| |
|
|||| ||| ||| || ||||||||||| ||||||||||||| |||||| || ||||||||||||||||| ||||||||||| |||| ||||||| |
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|
| T |
13980752 |
cgcaagcagctagctacctccatcacaccacgcaaacaccaataatctcgctaaccctcccgttggccaccacccattttgccaccgtttaaacatcacc |
13980851 |
T |
|
| Q |
221 |
gaaaac-accgtaagaaacgattttgatgctctgtctccctgctacatcaccgccgccacataccacaaaaccgccaccacacac |
304 |
Q |
| |
|
|||||| | |||||||||||||| ||||||| ||| ||| || |||||| || ||||| ||||||||||| ||||||||||| |
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|
| T |
13980852 |
gaaaacaaacgtaagaaacgattccgatgctccatcttcctactgaatcaccaccaccacacaccacaaaaccaccaccacacac |
13980936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 23 - 329
Target Start/End: Original strand, 51267002 - 51267309
Alignment:
| Q |
23 |
atcatcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaaaccacacttccnnnnnnnnnntcaaccat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| |
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|
| T |
51267002 |
atcatcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccgcgcaaaaaccacacttccaaaaaaaaccccaaccat |
51267101 |
T |
|
| Q |
123 |
cacgcacgcaactatctccatcacaccaatcaaacaccaataacttcgctacccttcccgttggccaccacctattttgccaccatttagacatcactga |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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|
| T |
51267102 |
cacgcacgcaactatctccatcacaccacacaaacactaataacctcgctacccttcccgttggccaccacccattttgccaccatttagacatcaccga |
51267201 |
T |
|
| Q |
223 |
aaacaccgtaagaaacgattttgatgctctgtctccctgctacatcaccgccgccacataccacaaaaccgccaccacacaca-aacccgaaacccggtt |
321 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
51267202 |
aaacaccgtaagaaacgattatgatgcttcgtctccctactacatcaccgccaccacacaccacaaaaccgccaccacacacacaacccgaaatccggtt |
51267301 |
T |
|
| Q |
322 |
catctcac |
329 |
Q |
| |
|
| |||||| |
|
|
| T |
51267302 |
cttctcac |
51267309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 116 - 286
Target Start/End: Original strand, 27261201 - 27261370
Alignment:
| Q |
116 |
caaccatcacgcacgcaactatctccatcacaccaatcaaacaccaataacttcgctacccttcccgttggccaccacctattttgccaccatttagaca |
215 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||| |||||||||||||| |||||| || |||||||| |||||| | ||||||| |||||||||||| |
|
|
| T |
27261201 |
caaccatcacgcaagcaactatttccatcacaccacgcaaacaccaataacctcgctaaccctcccgttgaccaccatccattttgctaccatttagaca |
27261300 |
T |
|
| Q |
216 |
tcactgaaaac-accgtaagaaacgattttgatgctctgtctccctgctacatcaccgccgccacataccac |
286 |
Q |
| |
|
|||| ||||| ||||||| |||| || |||||||| |||| ||| ||||||||||||| ||||| ||||| |
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|
| T |
27261301 |
tcaccaaaaacaaccgtaaaaaac--ttatgatgctccgtctgcctactacatcaccgccaccacacaccac |
27261370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 19289960 - 19290193
Alignment:
| Q |
21 |
acatcatcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaaaccacacttccnnnnnnnnnntcaacc |
120 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||| ||||| |
|
|
| T |
19289960 |
acatcatcacaagttgccacaaaatccgaaactagattatccaagcctaccccatccataccaccatgcaaaaatcacacctccaaaacccccc-caacc |
19290058 |
T |
|
| Q |
121 |
atcacgcacgcaactatctccatcacaccaatcaaacaccaataacttcgct-acccttcccgttggccaccacctattttgccaccatttagacatcac |
219 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| ||||||| |||||| ||||| | || ||||||||||||||||| ||||| ||||| |||| ||||||| |
|
|
| T |
19290059 |
atcacgcaagcagctatctccatcacaccacgcaaacactaataacctcgctaaaccctcccgttggccaccacccattttaccaccgtttaaacatcac |
19290158 |
T |
|
| Q |
220 |
tgaaaac-accgtaagaaacgattttgatgctctg |
253 |
Q |
| |
|
||| | |||||||||||| ||| |||||||||| |
|
|
| T |
19290159 |
caaaagcaaccgtaagaaacaattatgatgctctg |
19290193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 3958886 - 3958730
Alignment:
| Q |
27 |
tcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaaaccacacttccnnnnnnnnnntcaaccatcacg |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||| |||||||||||| ||| |||||||||| |
|
|
| T |
3958886 |
tcacaagctgccacaaaatccgaaactagattatccacgcctaccccatccatacccccacgcaaaaaccacacctcccacaaaacccccaaccatcaca |
3958787 |
T |
|
| Q |
127 |
cacgcaactatctccatcacaccaatcaaacaccaataacttcgctacccttcccgtt |
184 |
Q |
| |
|
|| | | || |||||||||||||| |||||||||||||| |||||| || ||||||| |
|
|
| T |
3958786 |
caagtagct-tctccatcacaccacacaaacaccaataacctcgctaaccctcccgtt |
3958730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 27844566 - 27844699
Alignment:
| Q |
119 |
ccatcacgcacgcaactatctccatcacaccaatcaaacaccaataacttcgct-acccttcccgttggccaccacctattttgccaccatttagacatc |
217 |
Q |
| |
|
||||||| || ||| ||||||||||||||||| |||||||||||||| ||| | | || ||| ||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
27844566 |
ccatcacacaagcagctatctccatcacaccacgcaaacaccaataacctcgttaaaccctcctgttggcc-ccacccattttgccaccatttaaacatc |
27844664 |
T |
|
| Q |
218 |
actgaaaac-accgtaagaaacgattttgatgctc |
251 |
Q |
| |
|
|| ||| | ||||||| ||||||||||||||||| |
|
|
| T |
27844665 |
accaaaagcaaccgtaaaaaacgattttgatgctc |
27844699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 27844699 - 27844748
Alignment:
| Q |
270 |
ccgccgccacataccacaaaaccgccaccacacaca-aacccgaaacccg |
318 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
27844699 |
ccgccaccacaaaccacaagaccgccaccacacacacaacccgaaacccg |
27844748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 153 - 305
Target Start/End: Complemental strand, 13995184 - 13995031
Alignment:
| Q |
153 |
caaacaccaataacttcgctacccttcccgttggccaccacctattttgccaccatttagacatcactgaaaaca-ccgtaagaaacgattttgatgctc |
251 |
Q |
| |
|
|||||||||||||| |||||| || |||| |||||||||||| ||||||| ||| |||| ||||||| |||||| ||||||||||||||| | |||||| |
|
|
| T |
13995184 |
caaacaccaataacctcgctaaccctcccattggccaccacccattttgcaaccgtttaaacatcaccaaaaacaaccgtaagaaacgattctaatgctc |
13995085 |
T |
|
| Q |
252 |
tgtctccctgctacatcaccgccgccacataccacaaaaccgccaccacacaca |
305 |
Q |
| |
|
||||| ||| || |||||||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
13995084 |
tgtcttcctactgcatcaccgccaccacacaccacaaaaccgccaccatacaca |
13995031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 13995291 - 13995217
Alignment:
| Q |
27 |
tcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccactcaaaaaccacact |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
13995291 |
tcacaagctgccacaaaatccgaaactagattattcaagcctacctcatccataccaccacgcaaaaaccacact |
13995217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 15150435 - 15150483
Alignment:
| Q |
254 |
tctccctgctacatcaccgccgccacataccacaaaaccgccaccacac |
302 |
Q |
| |
|
||||||| || ||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
15150435 |
tctccctactgcatcaccaccgccacacaccacaaaaccgctaccacac |
15150483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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