View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0755_low_69 (Length: 333)

Name: NF0755_low_69
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0755_low_69
NF0755_low_69
[»] chr2 (16 HSPs)
chr2 (1-321)||(23878161-23878481)
chr2 (59-264)||(21907647-21907853)
chr2 (126-265)||(23089602-23089742)
chr2 (102-282)||(23062996-23063177)
chr2 (126-264)||(23102031-23102170)
chr2 (102-200)||(23264424-23264523)
chr2 (102-282)||(24660889-24661070)
chr2 (187-315)||(26583185-26583313)
chr2 (130-299)||(29281336-29281506)
chr2 (130-299)||(25181446-25181615)
chr2 (191-299)||(9978-10086)
chr2 (171-318)||(5706610-5706758)
chr2 (102-282)||(26884518-26884700)
chr2 (208-265)||(23264511-23264568)
chr2 (134-264)||(27208290-27208422)
chr2 (134-264)||(27210625-27210757)
[»] chr8 (8 HSPs)
chr8 (19-265)||(14057193-14057438)
chr8 (1-265)||(25111199-25111463)
chr8 (102-265)||(18613534-18613697)
chr8 (188-299)||(24321216-24321327)
chr8 (187-282)||(23865950-23866045)
chr8 (102-252)||(21931031-21931182)
chr8 (208-282)||(17053949-17054024)
chr8 (165-252)||(21839798-21839886)
[»] chr7 (23 HSPs)
chr7 (100-299)||(20311597-20311796)
chr7 (11-265)||(11389916-11390169)
chr7 (1-265)||(21231565-21231828)
chr7 (11-253)||(11383440-11383681)
chr7 (126-265)||(16676660-16676800)
chr7 (126-265)||(17650896-17651036)
chr7 (126-282)||(13678799-13678956)
chr7 (102-282)||(46625272-46625453)
chr7 (171-282)||(13743029-13743140)
chr7 (112-299)||(16090407-16090595)
chr7 (172-318)||(12591230-12591377)
chr7 (112-299)||(29181654-29181842)
chr7 (187-282)||(13006769-13006865)
chr7 (187-315)||(13123506-13123634)
chr7 (188-282)||(3857988-3858082)
chr7 (187-282)||(12710468-12710563)
chr7 (188-282)||(2464763-2464857)
chr7 (206-299)||(2966383-2966476)
chr7 (206-299)||(20906993-20907086)
chr7 (130-282)||(14320193-14320347)
chr7 (268-321)||(16676792-16676845)
chr7 (268-321)||(17651028-17651081)
chr7 (133-165)||(31154735-31154767)
[»] scaffold0235 (3 HSPs)
scaffold0235 (1-265)||(15507-15771)
scaffold0235 (32-149)||(14933-15049)
scaffold0235 (145-265)||(23224-23345)
[»] chr4 (11 HSPs)
chr4 (19-265)||(15407319-15407563)
chr4 (112-299)||(16147376-16147564)
chr4 (102-262)||(13887097-13887258)
chr4 (102-262)||(13887954-13888115)
chr4 (125-299)||(11847439-11847614)
chr4 (124-231)||(15307453-15307562)
chr4 (171-318)||(53483023-53483171)
chr4 (168-265)||(14486049-14486146)
chr4 (171-318)||(8046420-8046567)
chr4 (102-252)||(8834198-8834348)
chr4 (130-231)||(15244554-15244657)
[»] scaffold0107 (1 HSPs)
scaffold0107 (1-265)||(41158-41421)
[»] scaffold0222 (1 HSPs)
scaffold0222 (60-282)||(16041-16264)
[»] scaffold0461 (2 HSPs)
scaffold0461 (32-265)||(626-859)
scaffold0461 (32-222)||(7605-7795)
[»] chr3 (20 HSPs)
chr3 (1-209)||(17243260-17243467)
chr3 (32-315)||(24192134-24192418)
chr3 (125-265)||(16802035-16802176)
chr3 (126-261)||(55499698-55499834)
chr3 (127-282)||(18914451-18914607)
chr3 (2-148)||(18889311-18889456)
chr3 (11-148)||(18892548-18892683)
chr3 (112-299)||(14865166-14865355)
chr3 (41-184)||(17157443-17157587)
chr3 (171-282)||(41455722-41455834)
chr3 (109-257)||(13324376-13324525)
chr3 (206-299)||(17131147-17131240)
chr3 (205-282)||(17241124-17241201)
chr3 (206-264)||(12034014-12034072)
chr3 (109-182)||(13313539-13313613)
chr3 (133-180)||(12034078-12034125)
chr3 (109-182)||(13302863-13302937)
chr3 (130-180)||(17131091-17131141)
chr3 (188-222)||(24192544-24192578)
chr3 (209-257)||(13302808-13302856)
[»] chr5 (13 HSPs)
chr5 (59-266)||(18408520-18408728)
chr5 (188-299)||(19236299-19236410)
chr5 (190-299)||(22467181-22467290)
chr5 (187-282)||(23527967-23528063)
chr5 (188-299)||(22460555-22460666)
chr5 (211-260)||(22439321-22439370)
chr5 (133-282)||(34829426-34829577)
chr5 (126-200)||(22439361-22439436)
chr5 (188-263)||(28889978-28890053)
chr5 (188-263)||(28896682-28896757)
chr5 (188-263)||(28909930-28910005)
chr5 (188-263)||(28931622-28931697)
chr5 (188-263)||(28946325-28946400)
[»] chr1 (10 HSPs)
chr1 (1-264)||(18711959-18712224)
chr1 (1-190)||(19663794-19663983)
chr1 (102-200)||(11157454-11157553)
chr1 (188-299)||(20858305-20858416)
chr1 (188-299)||(21705674-21705785)
chr1 (188-299)||(21710217-21710328)
chr1 (122-282)||(19961521-19961682)
chr1 (188-299)||(20851678-20851789)
chr1 (187-282)||(41111277-41111373)
chr1 (102-252)||(22030340-22030491)
[»] scaffold0025 (2 HSPs)
scaffold0025 (32-315)||(14977-15261)
scaffold0025 (188-222)||(14828-14862)
[»] scaffold0476 (1 HSPs)
scaffold0476 (126-299)||(3837-4011)
[»] chr6 (21 HSPs)
chr6 (35-200)||(24513457-24513622)
chr6 (126-265)||(21565759-21565899)
chr6 (102-264)||(18799762-18799925)
chr6 (63-200)||(9186764-9186902)
chr6 (102-282)||(19471897-19472077)
chr6 (171-315)||(29614738-29614882)
chr6 (188-299)||(20008493-20008604)
chr6 (171-318)||(34640575-34640723)
chr6 (171-318)||(34647249-34647397)
chr6 (102-264)||(25396496-25396659)
chr6 (187-282)||(12167700-12167796)
chr6 (187-282)||(19286609-19286705)
chr6 (187-282)||(19877793-19877889)
chr6 (187-282)||(19883569-19883665)
chr6 (188-316)||(21365067-21365195)
chr6 (188-316)||(23969049-23969177)
chr6 (171-318)||(25470290-25470438)
chr6 (122-263)||(19300318-19300460)
chr6 (187-282)||(19786491-19786587)
chr6 (208-265)||(24513412-24513469)
chr6 (133-222)||(11289294-11289384)
[»] scaffold0310 (1 HSPs)
scaffold0310 (103-315)||(6825-7024)
[»] scaffold0020 (1 HSPs)
scaffold0020 (102-265)||(102497-102661)
[»] scaffold0247 (1 HSPs)
scaffold0247 (102-265)||(10623-10787)
[»] scaffold0139 (1 HSPs)
scaffold0139 (102-265)||(15567-15730)
[»] scaffold0317 (1 HSPs)
scaffold0317 (126-282)||(692-849)
[»] scaffold0077 (1 HSPs)
scaffold0077 (126-265)||(4189-4329)
[»] scaffold0004 (2 HSPs)
scaffold0004 (102-265)||(116178-116342)
scaffold0004 (102-264)||(129216-129380)
[»] scaffold0028 (2 HSPs)
scaffold0028 (102-261)||(65417-65577)
scaffold0028 (110-252)||(1388-1531)
[»] scaffold0124 (2 HSPs)
scaffold0124 (165-265)||(34906-35006)
scaffold0124 (32-120)||(43708-43795)
[»] scaffold0085 (1 HSPs)
scaffold0085 (134-299)||(4217-4382)
[»] scaffold1061 (1 HSPs)
scaffold1061 (50-205)||(1661-1817)
[»] scaffold0138 (1 HSPs)
scaffold0138 (102-231)||(1130-1260)
[»] scaffold0154 (1 HSPs)
scaffold0154 (102-265)||(30212-30376)
[»] scaffold0053 (2 HSPs)
scaffold0053 (112-299)||(80036-80224)
scaffold0053 (102-282)||(81776-81957)
[»] scaffold0031 (2 HSPs)
scaffold0031 (102-252)||(121213-121364)
scaffold0031 (102-252)||(132090-132241)
[»] scaffold0090 (1 HSPs)
scaffold0090 (126-282)||(17503-17660)
[»] scaffold0026 (1 HSPs)
scaffold0026 (208-318)||(12437-12547)
[»] scaffold1773 (1 HSPs)
scaffold1773 (187-315)||(516-644)
[»] scaffold0634 (1 HSPs)
scaffold0634 (166-265)||(3050-3149)
[»] scaffold0456 (2 HSPs)
scaffold0456 (208-318)||(394-504)
scaffold0456 (208-318)||(7539-7649)
[»] scaffold0232 (1 HSPs)
scaffold0232 (105-282)||(18972-19150)
[»] scaffold0094 (1 HSPs)
scaffold0094 (102-222)||(51557-51678)
[»] scaffold0001 (2 HSPs)
scaffold0001 (102-282)||(493589-493771)
scaffold0001 (102-251)||(525075-525224)
[»] scaffold0483 (1 HSPs)
scaffold0483 (123-282)||(11571-11731)
[»] scaffold0023 (1 HSPs)
scaffold0023 (206-299)||(134867-134960)
[»] scaffold0117 (1 HSPs)
scaffold0117 (187-315)||(9167-9295)
[»] scaffold0029 (3 HSPs)
scaffold0029 (188-282)||(91764-91858)
scaffold0029 (188-282)||(97490-97584)
scaffold0029 (208-315)||(111271-111378)
[»] scaffold0453 (1 HSPs)
scaffold0453 (130-282)||(11113-11267)
[»] scaffold0261 (1 HSPs)
scaffold0261 (130-282)||(24132-24285)
[»] scaffold0924 (1 HSPs)
scaffold0924 (212-282)||(1376-1446)
[»] scaffold0335 (1 HSPs)
scaffold0335 (102-252)||(3209-3359)
[»] scaffold0720 (1 HSPs)
scaffold0720 (130-222)||(3882-3975)
[»] scaffold0206 (1 HSPs)
scaffold0206 (123-222)||(18021-18121)
[»] scaffold1469 (1 HSPs)
scaffold1469 (114-222)||(679-788)
[»] scaffold2054 (1 HSPs)
scaffold2054 (122-255)||(51-185)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 23878161 - 23878481
Alignment:
Q  1 tttcacttggttcacactcacttcaatccacaaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  23878161 tttcacttggttcacactcacttcaatccacaaattcattaaactatatcaactcgatttaacaatgcgtttagtaggattcagaatacatataatgatc 23878260  T
Q  101 ttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23878261 ttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcga 23878360  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaaa 300  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23878361 cggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggcagaatcaaaa 23878460  T
Q  301 aggttcctcgctcacaggttc 321  Q
    |||||||||||||||||||||    
T  23878461 aggttcctcgctcacaggttc 23878481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 59 - 264
Target Start/End: Original strand, 21907647 - 21907853
Alignment:
Q  59 ttaacaatgtgtttagtaggattcaaaatacatataatgatcttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggca 158  Q
    ||||||||||||| |||||||||||   || |||||||| |||||||||||||||||||||| ||| ||| ||||||||||| ||||||| |||||||||    
T  21907647 ttaacaatgtgttcagtaggattcagggtatatataatggtcttacaagttgaaaggaacatttaagaatactcaaaaggattccctagtacacgaggca 21907746  T
Q  159 aggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacgg 257  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||| ||||||| ||||    
T  21907747 aagttcaaaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttggggttccgctcgctaacgg 21907846  T
Q  258 ttcgctt 264  Q
    |||||||    
T  21907847 ttcgctt 21907853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 126 - 265
Target Start/End: Complemental strand, 23089742 - 23089602
Alignment:
Q  126 aatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccgg 224  Q
    |||||||||| || || |||| |||||||||||| |||||||| ||||||||||||||||| |||||||||||||| | | |||||||||||||||||||    
T  23089742 aatgctcaaaggggtctcctaatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagcgaccgg 23089643  T
Q  225 cttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23089642 cttacagtaagtctgggttctgctcgcttacggttcgcttg 23089602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 102 - 282
Target Start/End: Original strand, 23062996 - 23063177
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| |  |||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  23062996 tacaagttgaaagaaacatttttaaatgctcaaaaggatcccctaatgcacgaggcaaagttcaaaaagtggctgactaaggtcaacttcgcttaagcga 23063095  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
     |||| |||||||||||||||||||||||||  |||  |||||   |||||| |||  |||||||| |||||||| ||||||    
T  23063096 cggctggttcgcttaagcgaccggcttacagagagttggggtttcactcgctaacgcctcgcttgcggttcgcttaagcgaa 23063177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 126 - 264
Target Start/End: Complemental strand, 23102170 - 23102031
Alignment:
Q  126 aatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccgg 224  Q
    |||||||||| || || |||| |||||||||||| |||||||| ||||||||||||||||| |||||||||||||| | | |||||||||||| || |||    
T  23102170 aatgctcaaaggggtctcctaatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagtgatcgg 23102071  T
Q  225 cttacagtaagtctgggttctgctcgcttacggttcgctt 264  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23102070 cttacagtaagtctgggttctgctcgcttacggttcgctt 23102031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 23264424 - 23264523
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttc-aaaagtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  23264424 tacaagttgaaaggaacatttaaaaatgctcaaaaggatcccctagtgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcga 23264523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 102 - 282
Target Start/End: Original strand, 24660889 - 24661070
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||||||||| | ||  ||||||| |||||||||||||  | |||| ||||||||||    
T  24660889 tacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagtaaaattcaaaaagtggctgactaagaccttctttgcttaagcga 24660988  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
     |||| | |||||||||||||||||| |||| ||||  |||||| |  |||  |||||||||||||| || |||| ||||||    
T  24660989 cggctggctcgcttaagcgaccggctcacagaaagttggggttccgtgcgccaacggttcgcttgcaatttgcttaagcgaa 24661070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 187 - 315
Target Start/End: Original strand, 26583185 - 26583313
Alignment:
Q  187 cttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattct 286  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||  | ||||||||||||||| |      
T  26583185 cttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggttcagctcgcttacgggtcgctcacggttcgcttgagcgaacttc 26583284  T
Q  287 tggtagaatcaaaaaggttcctcgctcac 315  Q
    ||  |||||||||| ||||  ||||||||    
T  26583285 tgacagaatcaaaatggtttttcgctcac 26583313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 130 - 299
Target Start/End: Original strand, 29281336 - 29281506
Alignment:
Q  130 ctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggctt 227  Q
    |||||||||||||| |||||||||| |||||||||| |||  ||||||||||   |||  ||||||||||||| ||||||||||||||||||||| ||||    
T  29281336 ctcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcag-ttcgcttaagcgacggctagttcgcttaagcgaccagctt 29281434  T
Q  228 acagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
    |||||| |||||||||| | |||||||||| |||||  | | ||  || ||||||||||||| |||||||||    
T  29281435 acagtaggtctgggttcagttcgcttacgggtcgctcacggctcaattaagcgaattcttggcagaatcaaa 29281506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 299
Target Start/End: Complemental strand, 25181615 - 25181446
Alignment:
Q  130 ctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggctta 228  Q
    ||||||||| ||||||||||||||| ||||| |||| ||  ||||||||||   |||  ||||||||||||| |||||||| |||||||||||| |||||    
T  25181615 ctcaaaagggtcccctagtgcacgaagcaagattcagaaaaggctgactaacactcag-ttcgcttaagcgacggctagtttgcttaagcgaccagctta 25181517  T
Q  229 cagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
    ||||| |||||||||| | || ||||||| |||||  | | |||||| ||||||||||||| |||||||||    
T  25181516 cagtaggtctgggttcagttcacttacgggtcgctcacggctcgcttaagcgaattcttggcagaatcaaa 25181446  T

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Target: chr2; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 191 - 299
Target Start/End: Original strand, 9978 - 10086
Alignment:
Q  191 gcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggt 290  Q
    |||||||||| ||||||||||||||||||||| |||||||||| |||||||||| | |||||||||| |||||  | | |||||| |||||||||||||     
T  9978 gcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattcttggc 10077  T
Q  291 agaatcaaa 299  Q
    |||||||||    
T  10078 agaatcaaa 10086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 5706758 - 5706610
Alignment:
Q  171 ggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagt 269  Q
    |||||||||||||   |||||||||||||| ||||||||||||||||||||| |||||||||| | |||||| || | |||||||||| |||||  | ||    
T  5706758 ggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacggt 5706659  T
Q  270 tcgcttgagcgaattcttggtagaatcaaaaaggttcctcgctcacagg 318  Q
    ||||||||||||| | | |  |||||||||| ||||  |||||||||||    
T  5706658 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 5706610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 102 - 282
Target Start/End: Original strand, 26884518 - 26884700
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcg 199  Q
    |||||| | |||| ||||| ||||||| ||||||||| ||||||||||||||| |||||||||| |||| |||||||||||| |||  ||||||||||||    
T  26884518 tacaagctaaaagaaacatttaaaaatactcaaaagggtcccctagtgcacgaagcaaggttcagaaagaggctgactaaggctca-gttcgcttaagcg 26884616  T
Q  200 atggctagttcgcttaagcgaccggcttacagtaagtctgggttct-gctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    | || ||| |||||||||||||| ||  |||  | ||   |||||| ||||||| |||||| |||  |||||||||||||||||    
T  26884617 aagggtagctcgcttaagcgaccagcacacaaaaggttgaggttctcgctcgctcacggttagctcacagttcgcttgagcgaa 26884700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 23264511 - 23264568
Alignment:
Q  208 ttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    ||||||||||||||||||||||||  |||| |||||  ||||||| ||||||||||||    
T  23264511 ttcgcttaagcgaccggcttacagagagtcggggtttcgctcgctaacggttcgcttg 23264568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 264
Target Start/End: Complemental strand, 27208422 - 27208290
Alignment:
Q  134 aaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacag 231  Q
    ||||| |||||||||||||||  ||||||||| |||  |||||||||||| |||  ||||||||||||| || ||| |||||||||||||| ||| ||||    
T  27208422 aaagggtcccctagtgcacgaaacaaggttcagaaaaaggctgactaaggctcag-ttcgcttaagcgaagggtagctcgcttaagcgaccagctcacag 27208324  T
Q  232 taagtctgggttct-gctcgcttacggttcgctt 264  Q
     ||||   ||| || ||||||| |||||||||||    
T  27208323 aaagttcaggtcctcgctcgctcacggttcgctt 27208290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 264
Target Start/End: Complemental strand, 27210757 - 27210625
Alignment:
Q  134 aaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacag 231  Q
    ||||| |||||||||||||||  ||||||||| |||  |||||||||||| |||  ||||||||||||| || ||| |||||||||||||| ||| ||||    
T  27210757 aaagggtcccctagtgcacgaaacaaggttcagaaaaaggctgactaaggctcag-ttcgcttaagcgaagggtagctcgcttaagcgaccagctcacag 27210659  T
Q  232 taagtctgggttct-gctcgcttacggttcgctt 264  Q
     ||||   ||| || ||||||| |||||||||||    
T  27210658 aaagttcaggtcctcgctcgctcacggttcgctt 27210625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 171; Significance: 8e-92; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 14057438 - 14057193
Alignment:
Q  19 cacttcaatccacaaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgatcttacaagttgaaaggaac 118  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||    
T  14057438 cacttcaatccacaaattcattaaactataccaactcgatt-aacaatgtgtttagtaggattcagggtacatataatggtcttacaagttgaaaggaac 14057340  T
Q  119 atctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagc 218  Q
    || || |||| |||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||    
T  14057339 atttagaaatactcaaaaggatcccctagtgcatgaggcaaagttcaaaagtggctgattaaggtcatcttcgcttaagcgacggctagctcgcttaagc 14057240  T
Q  219 gaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    |||||||| |||| |||||||||||| ||||||| ||||||||||||    
T  14057239 gaccggctcacagaaagtctgggttccgctcgctgacggttcgcttg 14057193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 25111199 - 25111463
Alignment:
Q  1 tttcacttggtt-cacactcacttcaatccacaaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgat 99  Q
    |||||||||||| || || ||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||   || |||||||| |    
T  25111199 tttcacttggtttcatacccacttcaatccacaaatacattaaactataccaactcgatt-aacaatgtgtttagtaggattcagggtatatataatggt 25111297  T
Q  100 cttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcg 199  Q
    ||||||||||||||||||||  || |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  25111298 cttacaagttgaaaggaacacttagaaatactcaaaaggatcccctagtgcacgaggcaaagttcaaaagtggctgactatggtcatcttcgcttaagcg 25111397  T
Q  200 atggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    | ||| |||||||||||||||||| || |||| |||||||||||| ||||||| ||||||||||||    
T  25111398 acggccagttcgcttaagcgaccgactcacagaaagtctgggttccgctcgctgacggttcgcttg 25111463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 102 - 265
Target Start/End: Original strand, 18613534 - 18613697
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcgat 201  Q
    ||||||||||||||||||| |  |||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||     
T  18613534 tacaagttgaaaggaacatttttaaatgctcaagaggatcccctagtgcacgaggcaaagttcaaaagtggccgactaaggtcatcttcgcttaagcgac 18613633  T
Q  202 ggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    |||| |||||||||||||||| ||||||||  |||  |||||| ||||||| ||||||||||||    
T  18613634 ggctggttcgcttaagcgacctgcttacagagagttggggttccgctcgctaacggttcgcttg 18613697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 24321327 - 24321216
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattctt 287  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| | |||||||||| |||||  | | |||||| |||||||||||    
T  24321327 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattctt 24321228  T
Q  288 ggtagaatcaaa 299  Q
    || |||||||||    
T  24321227 ggcagaatcaaa 24321216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 23865950 - 23866045
Alignment:
Q  187 cttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||||||||||||| |||||| ||||||||||||||  ||||||||| |||||||||| | |||||||||| |||||  | |||||||||||||||    
T  23865950 cttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 23866045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 252
Target Start/End: Original strand, 21931031 - 21931182
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaa-ggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| | | |||||||| | |||| |||||||| | || ||||  |  ||||||||||||| || || | |||||||||||||||    
T  21931031 tacaagttgaaagaaacattttagaatgctcagatggattccctagtggaggaagcaaaatcaaaaagtggctgaccaaaggccttcttcgcttaagcga 21931130  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgct 252  Q
     |||| |||| |||||||||||| |||||||  |||  | ||||||||||||    
T  21931131 aggctggttcacttaagcgaccgacttacagagagttggtgttctgctcgct 21931182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 17053949 - 17054024
Alignment:
Q  208 ttcgcttaagcgaccggcttacagtaagt-ctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    ||||||||||||||| |||||||||| || |||||||| | |||||||||| |||||  | |||||||||||||||    
T  17053949 ttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 17054024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 21839798 - 21839886
Alignment:
Q  165 aaaagtggctgactaa-ggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgct 252  Q
    ||||||||||||| || || | |||||||||||| || |||| ||||||||||||||||| |||||||  |||  | ||||||||||||    
T  21839798 aaaagtggctgaccaaaggccttcttcgcttaagtgaaggctggttcgcttaagcgaccgacttacagagagttggtgttctgctcgct 21839886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 100 - 299
Target Start/End: Complemental strand, 20311796 - 20311597
Alignment:
Q  100 cttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcg 199  Q
    ||||||||||||||||||||| || |||| |||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  20311796 cttacaagttgaaaggaacatttagaaatactcaaagggatcccctagtgcacgaggcaaagttcaaaagtggctaactgaggtcatcttcgcttaagcg 20311697  T
Q  200 atggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
    | |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  20311696 acggctagctcgcttaagcgaccggcttgcagtaagtctgggttctgctcgcttacggttcgcttgcggttcgcttaagcgaattcttggcagaatcaaa 20311597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 11390169 - 11389916
Alignment:
Q  11 ttcacactcacttcaatccacaaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgatcttacaagttg 110  Q
    |||| ||||||||||||||  ||||||||||| ||||| ||||||| |||||||||||||||||||||| |||   |  |||||||   |||||||||||    
T  11390169 ttcatactcacttcaatccg-aaattcattaagctataccaactcg-tttaacaatgtgtttagtaggaatcagggtgtatataatagccttacaagttg 11390072  T
Q  111 aaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagtt 209  Q
    |||||||||| || |||| |||||| ||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |    
T  11390071 aaaggaacatttagaaatactcaaagggatcccttagtgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagct 11389972  T
Q  210 cgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  11389971 cgcttaagcgaccgactcacagtaagtctgggttccgctcgcttacggttcgcttg 11389916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 21231828 - 21231565
Alignment:
Q  1 tttcacttggtt-cacactcacttcaatccacaaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgat 99  Q
    |||||||||||| || ||||||| ||||||| |||||||||||| |||| ||||||| || |||||||||||||||||||||||   || |||||||| |    
T  21231828 tttcacttggtttcatactcactccaatcca-aaattcattaaattataccaactcggtt-aacaatgtgtttagtaggattcagggtatatataatggt 21231731  T
Q  100 cttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcg 199  Q
    |||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  21231730 cttacacgttgaaaggaacatttagaaatactcaaaaggatcccctagtgcacgaggcaaagttcaaaagtggctgacaaaggtcatcttcgcttaagcg 21231631  T
Q  200 atggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    | | | |||| |||||||||||| ||| |||| ||||  |||||| ||||||| ||||||||||||    
T  21231630 acgaccagtttgcttaagcgaccagctcacagaaagttggggttccgctcgctgacggttcgcttg 21231565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 11383681 - 11383440
Alignment:
Q  11 ttcacactcacttcaatccacaaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgatcttacaagttg 110  Q
    |||| ||||||||||||||  ||||||||||| ||||| ||||||| |||||||||||||||||||||| |||   |  |||||||   |||||||||||    
T  11383681 ttcatactcacttcaatccg-aaattcattaagctataccaactcg-tttaacaatgtgtttagtaggaatcagggtgtatataatagccttacaagttg 11383584  T
Q  111 aaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagtt 209  Q
    |||||||||| || |||| || ||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |    
T  11383583 aaaggaacatttagaaatactgaaagggatcccctagtgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagct 11383484  T
Q  210 cgcttaagcgaccggcttacagtaagtctgggttctgctcgctt 253  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||    
T  11383483 cgcttaagcgacaggctcacagtaagtctgggttccgctcgctt 11383440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 126 - 265
Target Start/End: Original strand, 16676660 - 16676800
Alignment:
Q  126 aatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccgg 224  Q
    ||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||| |||||||||||||| | |||||||||||||||||||||    
T  16676660 aatgctcaaaagggtcccctaatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgactagttcgcttaagcgaccgg 16676759  T
Q  225 cttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  16676760 cttacagtaagtctgggttccgctcgcttatggttcgcttg 16676800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 126 - 265
Target Start/End: Original strand, 17650896 - 17651036
Alignment:
Q  126 aatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccgg 224  Q
    ||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||| |||||||||||||| | |||||||||||||||||||||    
T  17650896 aatgctcaaaagggtcccctaatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgactagttcgcttaagcgaccgg 17650995  T
Q  225 cttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  17650996 cttacagtaagtctgggttccgctcgcttatggttcgcttg 17651036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 126 - 282
Target Start/End: Original strand, 13678799 - 13678956
Alignment:
Q  126 aatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccgg 224  Q
    ||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  13678799 aatgctcaaaaggatcccctaatgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctggttcgcttaagcgaccgg 13678898  T
Q  225 cttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||||||  |||  |||||   |||||| ||| ||||||||| |||||||| ||||||    
T  13678899 cttacagagagttggggtttccctcgctaacgtttcgcttgcggttcgcttaagcgaa 13678956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 282
Target Start/End: Original strand, 46625272 - 46625453
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaa-agtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| | ||||||||||||||||| |||||||||||||  |||  |||||| ||||||||||||||  |  ||||||||||||||    
T  46625272 tacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaaacaaaattcaaagagtggctgactaagacctacttcgcttaagcga 46625371  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
     |||| | |||||||||||||| ||||||||  |||  | |||||||||||| | |||| ||| || |||||||| ||||||    
T  46625372 cggctggctcgcttaagcgacctgcttacagagagttggcgttctgctcgctaatggtttgctcgcggttcgcttaagcgaa 46625453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 171 - 282
Target Start/End: Original strand, 13743029 - 13743140
Alignment:
Q  171 ggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagt 269  Q
    |||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| |||||  | ||    
T  13743029 ggctgactaaggctca-cttcgcttaagcgacggctagttcgcttaagcgaccggcttatagtaggtctgggttcagctcgcttacgggtcgctcacggt 13743127  T
Q  270 tcgcttgagcgaa 282  Q
    |||||||||||||    
T  13743128 tcgcttgagcgaa 13743140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 112 - 299
Target Start/End: Original strand, 16090407 - 16090595
Alignment:
Q  112 aaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagtt 209  Q
    |||||||| ||| || | |||||||||||||| |||||||||| |||||||||| |||  ||||||||||   |||  ||||||||||||| |||||| |    
T  16090407 aaggaacacctagaagtactcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcag-ttcgcttaagcgacggctagct 16090505  T
Q  210 cgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
    |||||||||||||  ||||||||| |||||||||| | |||||||||| |||||  | | | |||| ||||||||||||| |||||||||    
T  16090506 cgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtcgctcacggcttgcttaagcgaattcttggcagaatcaaa 16090595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 172 - 318
Target Start/End: Complemental strand, 12591377 - 12591230
Alignment:
Q  172 gctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagtt 270  Q
    ||||||||||||   |||||||||||||| ||||||||||||||||||||| |||||||||| | |||||| || | |||||||||| |||||  | |||    
T  12591377 gctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggatctgggatcagttcgcttacgggtcgctcacggtt 12591278  T
Q  271 cgcttgagcgaattcttggtagaatcaaaaaggttcctcgctcacagg 318  Q
    |||||||||||| | | |  |||||||||| ||||  |||||||||||    
T  12591277 cgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 12591230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 299
Target Start/End: Complemental strand, 29181842 - 29181654
Alignment:
Q  112 aaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagtt 209  Q
    |||||||| ||| || |||||||||||||||| |||||||||| |||||||||| |||  | ||||||||   |||  || |||||||||| |||||| |    
T  29181842 aaggaacacctagaagtgctcaaaaggatcccttagtgcacgaagcaaggttcagaaaaagactgactaacactcagttt-gcttaagcgacggctagct 29181744  T
Q  210 cgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
    |||||||||||||  ||||||||| |||||||||| | ||||||| || |||||  | | |||||| |||||| |||||| |||||||||    
T  29181743 cgcttaagcgaccatcttacagtaggtctgggttcagttcgcttatgggtcgctcacggctcgcttaagcgaactcttggcagaatcaaa 29181654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 13006769 - 13006865
Alignment:
Q  187 cttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||| | |||||||||| |||||  | |||||||||||||||    
T  13006769 cttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 13006865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 315
Target Start/End: Complemental strand, 13123634 - 13123506
Alignment:
Q  187 cttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattct 286  Q
    |||||||||||||| |||||| ||||||||||||||  ||||||||| |||||||||| | |||||||||| |||||  | ||||||||||||||| | |    
T  13123634 cttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaacttt 13123535  T
Q  287 tggtagaatcaaaaaggttcctcgctcac 315  Q
     |  |||||||||| ||||  ||||||||    
T  13123534 ggacagaatcaaaatggtttttcgctcac 13123506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 3858082 - 3857988
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    ||||||||||||| |||||| ||||||||||||||  ||||||||| |||||||||| | |||||||||| |||||  | |||||||||||||||    
T  3858082 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 3857988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 282
Target Start/End: Complemental strand, 12710563 - 12710468
Alignment:
Q  187 cttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||||||||||||| |||||| ||||||||||||||  ||||||||| |||||||||| | |||||||| | |||||  | |||||||||||||||    
T  12710563 cttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacaggtcgctcacggttcgcttgagcgaa 12710468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 2464763 - 2464857
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    ||||||||||||| |||||| ||||||||||||||  ||||||||| |||||||||| | |||||||||| |||||  | ||||||||| |||||    
T  2464763 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgggcgaa 2464857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 2966383 - 2966476
Alignment:
Q  206 agttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
    ||||||||||||||||| |||||||||| |||||||||| | ||||||| || ||| |  | | |||||| ||||||||||||| |||||||||    
T  2966383 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatgggtcgttcacggctcgcttaagcgaattcttggcagaatcaaa 2966476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 299
Target Start/End: Complemental strand, 20907086 - 20906993
Alignment:
Q  206 agttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
    ||||||||||||||||| |||||||||| |||||||||| | ||||||| | |||| |  | | |||||| ||||||||||||| |||||||||    
T  20907086 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatgtttcgttcacggctcgcttaagcgaattcttggcagaatcaaa 20906993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 282
Target Start/End: Complemental strand, 14320347 - 14320193
Alignment:
Q  130 ctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggctt 227  Q
    ||||||||| |||||||||||| ||  ||||||||| |||  |||||||||||| |||  ||||||||||||| || ||| ||||||||||||||||||     
T  14320347 ctcaaaagggtcccctagtgcaggaaacaaggttcagaaaaaggctgactaaggctcag-ttcgcttaagcgaagggtagctcgcttaagcgaccggctc 14320249  T
Q  228 acagtaagtctgggttct-gctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||| ||||   ||| || ||||||| || |||||||  | |||||||||||||||    
T  14320248 acagaaagttgaggtcctcgctcgctcacagttcgctcacggttcgcttgagcgaa 14320193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 16676792 - 16676845
Alignment:
Q  268 gttcgcttgagcgaattcttggtagaatcaaaaaggttcctcgctcacaggttc 321  Q
    |||||||||||||||||||||  |||||||||| ||||  ||||| ||||||||    
T  16676792 gttcgcttgagcgaattcttgacagaatcaaaatggtttttcgcttacaggttc 16676845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 17651028 - 17651081
Alignment:
Q  268 gttcgcttgagcgaattcttggtagaatcaaaaaggttcctcgctcacaggttc 321  Q
    |||||||||||||||||||||  |||||||||| ||||  ||||| ||||||||    
T  17651028 gttcgcttgagcgaattcttgacagaatcaaaatggtttttcgcttacaggttc 17651081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 31154735 - 31154767
Alignment:
Q  133 aaaaggatcccctagtgcacgaggcaaggttca 165  Q
    ||||||||||||||||||||||||||| |||||    
T  31154735 aaaaggatcccctagtgcacgaggcaaagttca 31154767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 15771 - 15507
Alignment:
Q  1 tttcacttggtt-cacactcacttcaatccacaaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgat 99  Q
    |||||||||||| || ||||||| ||||||  |||||||||||| |||  |||||||||| |||||||||||||||||||||||   |||||||||||||    
T  15771 tttcacttggtttcatactcactccaatccg-aaattcattaaattattccaactcgatt-aacaatgtgtttagtaggattcagggtacatataatgat 15674  T
Q  100 cttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttc-aaaagtggctgactaaggtcatcttcgcttaagc 198  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||    
T  15673 cttacaagttgaaaggaacatttagaaatgctcaaaaggatcccctagtgcacgaggcaaatttcaaaaagtggctgactaaggtcatcttcgcttaagc 15574  T
Q  199 gatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    ||||||||| || |||||||||| |||| |||| ||||  |||||| ||||||| ||||||||||||    
T  15573 gatggctagctcacttaagcgactggctcacagaaagttggggttccgctcgctgacggttcgcttg 15507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 149
Target Start/End: Complemental strand, 15049 - 14933
Alignment:
Q  32 aaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgatcttacaagttgaaaggaacatctaaaaatgct 131  Q
    |||||||||||| |||| |||||||||| |||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||| || |||||||    
T  15049 aaattcattaaattataccaactcgatt-aacaatgtgtttagtaggattcagggtacatgtaatgatcttacaagttgaaaggaacatttagaaatgct 14951  T
Q  132 caaaaggatcccctagtg 149  Q
    ||||||||||||||||||    
T  14950 caaaaggatcccctagtg 14933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 145 - 265
Target Start/End: Complemental strand, 23345 - 23224
Alignment:
Q  145 tagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggtt 243  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| || ||||||| |||| ||||  |||||    
T  23345 tagtgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagctcgcttaggcaaccggctcacagaaagttggggtt 23246  T
Q  244 ctgctcgcttacggttcgcttg 265  Q
    |  |||||| ||||||||||||    
T  23245 caactcgctgacggttcgcttg 23224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 15407319 - 15407563
Alignment:
Q  19 cacttcaatccacaaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgatcttacaagttgaaaggaac 118  Q
    |||||||||||  ||||||||||||||||| ||||| | || ||||||||||||||||||||||||  || |||||||| ||||| ||||||||||||||    
T  15407319 cacttcaatccg-aaattcattaaactataccaacttgctt-aacaatgtgtttagtaggattcaaggtatatataatggtcttaaaagttgaaaggaac 15407416  T
Q  119 atctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagc 218  Q
    || || |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||    
T  15407417 atttagaaatactcaaaaggatcccctagtgcacgaggcaaagttcaaaagtggctgactatggtcatcttcgcttaagcgacggccagttcgcttaagc 15407516  T
Q  219 gaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    |||||||| |||| |||||| ||||| ||||||| ||||||||||||    
T  15407517 gaccggctcacagaaagtctaggttccgctcgctgacggttcgcttg 15407563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 299
Target Start/End: Complemental strand, 16147564 - 16147376
Alignment:
Q  112 aaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagtt 209  Q
    |||||||| ||| || | |||||||||||||| |||||||||| |||||||||| |||  ||||||||||   |||  ||||||||||||| |||||| |    
T  16147564 aaggaacacctagaagtactcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcag-ttcgcttaagcgacggctagct 16147466  T
Q  210 cgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
    |||||||||||||  ||||||||| |||||||||| | |||||||||| |||||  | | |||||| ||||||||||||| |||||||||    
T  16147465 cgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattcttggcagaatcaaa 16147376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 13887097 - 13887258
Alignment:
Q  102 tacaagttgaaaggaacatcta-aaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| |  |||||| |||||||||| ||||||||||||| ||||  ||||||||||||| ||||||  | |||||||||||||||    
T  13887097 tacaagttgaaagaaacatttttaaaatgttcaaaaggattccctagtgcacgaagcaaaattcaaaagtggctaactaagaccttcttcgcttaagcga 13887196  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgc 262  Q
     |||| | |||||||| ||||||||||||||  |||  | |||||||||||| | |||||||    
T  13887197 cggctggctcgcttaaacgaccggcttacagagagttggcgttctgctcgctaatggttcgc 13887258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 13887954 - 13888115
Alignment:
Q  102 tacaagttgaaaggaacatcta-aaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| |  |||||| |||||||||| ||||||||||||| ||||  ||||||||||||| ||||||  | |||||||||||||||    
T  13887954 tacaagttgaaagaaacatttttaaaatgttcaaaaggattccctagtgcacgaagcaaaattcaaaagtggctaactaagaccttcttcgcttaagcga 13888053  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgc 262  Q
     |||| | |||||||| ||||||||||||||  |||  | |||||||||||| | |||||||    
T  13888054 cggctggctcgcttaaacgaccggcttacagagagttggcgttctgctcgctaatggttcgc 13888115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 299
Target Start/End: Original strand, 11847439 - 11847614
Alignment:
Q  125 aaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgacc 222  Q
    |||| ||||||||| ||||||||||||| | |||| ||||| |||| |||||||||||| ||| || ||||||||||| || ||||||||||||||||||    
T  11847439 aaatactcaaaagggtcccctagtgcacaaagcaaagttcagaaagaggctgactaaggctcagct-cgcttaagcgacgggtagttcgcttaagcgacc 11847537  T
Q  223 ggcttacagtaagtctgggttct-gctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
      || |||| |||| ||| |||| |||||||||||| |||||  | |||||||| ||||||||||||| |||||||||    
T  11847538 aact-acaggaagtttggattctagctcgcttacgggtcgctcacggttcgcttaagcgaattcttggcagaatcaaa 11847614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 15307453 - 15307562
Alignment:
Q  124 aaaatgctcaaaaggatcccctagtgcacgaggcaaggttc--aaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgac 221  Q
    ||||||||| ||||||| ||||||||||||| |||| |||   |||||||||||||||||  | |||||||||||||||||||| | |||||||||||||    
T  15307453 aaaatgctcgaaaggattccctagtgcacgaagcaaagtttcgaaaagtggctgactaagaccttcttcgcttaagcgatggctggctcgcttaagcgac 15307552  T
Q  222 cggcttacag 231  Q
    || |||||||    
T  15307553 cgacttacag 15307562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 318
Target Start/End: Original strand, 53483023 - 53483171
Alignment:
Q  171 ggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagt 269  Q
    |||||||||||||   |||||||||||||| ||| ||||||||||||||||| |||||||||| | |||||| || | |||||||||| |||||  | ||    
T  53483023 ggctgactaaggttcacttcgcttaagcgacggcaagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacggt 53483122  T
Q  270 tcgcttgagcgaattcttggtagaatcaaaaaggttcctcgctcacagg 318  Q
    ||||||||||||| | | |  |||||||||| ||||  |||||||||||    
T  53483123 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 53483171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 265
Target Start/End: Original strand, 14486049 - 14486146
Alignment:
Q  168 agtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    ||||||||||||||| ||| |||||||||||||| |||| | |||||||||||||||||||||||  ||| ||||||| ||||||| ||||||||||||    
T  14486049 agtggctgactaaggctca-cttcgcttaagcgaaggctggctcgcttaagcgaccggcttacagagagtttgggttccgctcgctcacggttcgcttg 14486146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 8046567 - 8046420
Alignment:
Q  171 ggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagt 269  Q
    |||||||||||| ||| |||||||||||||| | |||| ||||||||||||||  |||| |||| |||||||||| | |||||||||| |||||  | ||    
T  8046567 ggctgactaaggctca-cttcgcttaagcgacgtctagctcgcttaagcgaccaacttatagtaggtctgggttcagttcgcttacgggtcgctcacggt 8046469  T
Q  270 tcgcttgagcgaattcttggtagaatcaaaaaggttcctcgctcacagg 318  Q
    ||||||||||||| | | |  |||||||||| ||||  |||||||||||    
T  8046468 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 8046420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 252
Target Start/End: Original strand, 8834198 - 8834348
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| | | || |||||||||||| | |||||||| || ||||   |||||| |||||||||||||  | |||||||||||||||    
T  8834198 tacaagttgaaagaaacattttagaacgctcaaaaggattctctagtgcatgaagcaaaaatcaaaaagtggctgactaagaccttcttcgcttaagcga 8834297  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgct 252  Q
     |||| | | | |||||||||||||||||||  |||  | ||||||||||||    
T  8834298 aggctggcttg-ttaagcgaccggcttacagagagttggtgttctgctcgct 8834348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 15244554 - 15244657
Alignment:
Q  130 ctcaaaaggatcccctagtgcacgaggcaaggtt--caaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggctt 227  Q
    ||||||||||| ||||||||||||| ||||  ||   |||||||||||||||||  | |||||| |||||||| || |   |||||||||||||||||||    
T  15244554 ctcaaaaggattccctagtgcacgaagcaaaatttcaaaaagtggctgactaagaccttcttcgattaagcgacggttgactcgcttaagcgaccggctt 15244653  T
Q  228 acag 231  Q
    ||||    
T  15244654 acag 15244657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 41421 - 41158
Alignment:
Q  1 tttcacttggtt-cacactcacttcaatccacaaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgat 99  Q
    |||||||||||| || |||||||| |||||  ||||||||||||||||| |||||||||| |||||||||||||||||||||||   || |||||||| |    
T  41421 tttcacttggtttcatactcactttaatcct-aaattcattaaactataccaactcgatt-aacaatgtgtttagtaggattcagggtatatataatggt 41324  T
Q  100 cttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcg 199  Q
    ||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  41323 cttacaagttgaaaggaacatttagaaatactcaaaaggatcccctagtgcacgaggcaaagttcaaaagtgtctgactaaggtcatcttcgcttaagcg 41224  T
Q  200 atggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    | | ||||||||||||||||| ||||| |||| | ||  |||||| ||||||| || |||||||||    
T  41223 acgtctagttcgcttaagcgatcggctcacagaaggttggggttccgctcgctgacagttcgcttg 41158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 60 - 282
Target Start/End: Original strand, 16041 - 16264
Alignment:
Q  60 taacaatgtgtttagtaggattcaaaatacatataatgatcttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaa 159  Q
    |||||||||||| |||||||||||   || |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16041 taacaatgtgttcagtaggattcagggtatatataatggtcttacaagttgaaaggaacatttaaaaatgctcaaaaggatcccctagtgcacgaggcaa 16140  T
Q  160 ggttc-aaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggt 258  Q
     |||| |||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||  |||||| ||||||| |||||    
T  16141 agttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggttagctcgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggt 16240  T
Q  259 tcgcttgcagttcgcttgagcgaa 282  Q
    |||||||| ||||| || ||||||    
T  16241 tcgcttgcggttcggttaagcgaa 16264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 32 - 265
Target Start/End: Complemental strand, 859 - 626
Alignment:
Q  32 aaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgatcttacaagttgaaaggaacatctaaaaatgct 131  Q
    |||||||||||| || | ||| |||||| ||||||||||| |||||||||||   || |||||||| |||||||||||||||||||||| || |||||||    
T  859 aaattcattaaattacaccaattcgatt-aacaatgtgttcagtaggattcagggtatatataatggtcttacaagttgaaaggaacatttagaaatgct 761  T
Q  132 caaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttaca 230  Q
    ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  760 caaaaggatcccctagtgcacgacgcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttaca 661  T
Q  231 gtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    | ||||  |||||  ||||||| ||||||||||||    
T  660 gaaagttggggtttcgctcgctgacggttcgcttg 626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 32 - 222
Target Start/End: Complemental strand, 7795 - 7605
Alignment:
Q  32 aaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgatcttacaagttgaaaggaacatctaaaaatgct 131  Q
    |||||||||||| || | ||| |||||| ||||||||||| |||||||||||   || |||||||| |||||||||||||||||||||| || |||||||    
T  7795 aaattcattaaattacaccaattcgatt-aacaatgtgttcagtaggattcagggtatatataatggtcttacaagttgaaaggaacatttagaaatgct 7697  T
Q  132 caaaaggatcccctagtgcacgaggcaaggttc-aaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgacc 222  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7696 caaaaggatcccctagtgcacgacgcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagttcgcttaagcgacc 7605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 17243467 - 17243260
Alignment:
Q  1 tttcacttggtt-cacactcacttcaatccacaaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgat 99  Q
    |||||||||||| || ||||||| ||||||| |||||||||||| || | |||||||||| ||||||||||| |||||||||||   || |||||||| |    
T  17243467 tttcacttggtttcatactcactccaatcca-aaattcattaaattacaccaactcgatt-aacaatgtgttcagtaggattcatggtatatataatggt 17243370  T
Q  100 cttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcg 199  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17243369 cttacaagttggaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaagttcaaaagtggctgactaaggtcatcttcgcttaagcg 17243270  T
Q  200 atggctagtt 209  Q
    ||||||||||    
T  17243269 atggctagtt 17243260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 32 - 315
Target Start/End: Original strand, 24192134 - 24192418
Alignment:
Q  32 aaattcattaaa-ctatatcaactcgatttaacaatgtgtttagtaggattcaaaatac--atataatgatcttacaagttgaaaggaacatctaaaaat 128  Q
    |||||||||||| ||||| |||||| | |||||||||||||||||||||||||   ||   |||||||| |||||||||||||||||||||| || || |    
T  24192134 aaattcattaaaactataccaactc-acttaacaatgtgtttagtaggattcagggtatgtatataatggtcttacaagttgaaaggaacatttagaagt 24192232  T
Q  129 gctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggctta 228  Q
     |||||||||  | |||||||||||||| ||  |||||| ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  24192233 actcaaaaggg-ctcctagtgcacgaggtaaaattcaaaggtggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggctta 24192331  T
Q  229 cagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaaaaggttcctcgctcac 315  Q
    ||||||||||||||||  ||| |||||||||||||  | ||||||||||||||| |  ||  |||||||||| ||||  ||||||||    
T  24192332 cagtaagtctgggttcaactcacttacggttcgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 24192418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 125 - 265
Target Start/End: Complemental strand, 16802176 - 16802035
Alignment:
Q  125 aaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccg 223  Q
    |||||||||||||| ||||||| |||| ||||||| |||||||| |||||| |||||||||| |||||||||| ||| |||||| |||||||||||||||    
T  16802176 aaatgctcaaaagggtcccctaatgcatgaggcaaagttcaaaaagtggctaactaaggtcaacttcgcttaaacgacggctagctcgcttaagcgaccg 16802077  T
Q  224 gcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16802076 gcttacagtaagtctgggttctgctcgcttacggttcgcttg 16802035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 126 - 261
Target Start/End: Complemental strand, 55499834 - 55499698
Alignment:
Q  126 aatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccgg 224  Q
    ||||||||||||| || |||| | |||||||||| |||||||| ||||||||||||| ||| |||||||||||||| | |||||||||||||||||||||    
T  55499834 aatgctcaaaagggtctcctaatacacgaggcaacgttcaaaaagtggctgactaagatcaacttcgcttaagcgacgtctagttcgcttaagcgaccgg 55499735  T
Q  225 cttacagtaagtctgggttctgctcgcttacggttcg 261  Q
    |||||||||||||| ||||||||||||||||||||||    
T  55499734 cttacagtaagtctaggttctgctcgcttacggttcg 55499698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 127 - 282
Target Start/End: Original strand, 18914451 - 18914607
Alignment:
Q  127 atgctcaaaaggatcccctagtgcacgaggcaagg-ttcaaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggc 225  Q
    |||||||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  18914451 atgctcaaaaggatcccctaatgcacgaggcaaaaattcaaaagtggctgactaaggtcatcttcgcttaagcgatggcaggttcgcttaagcgaccggc 18914550  T
Q  226 ttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    ||| ||  |||  |||||| ||||||| | ||||||||||| |||| ||| ||||||    
T  18914551 ttatagagagttggggttccgctcgctaaaggttcgcttgcggttcacttaagcgaa 18914607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 18889311 - 18889456
Alignment:
Q  2 ttcacttggtt-cacactcacttcaatccacaaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgatc 100  Q
    ||||||||||| || ||||||||||||||  |||||||||||||||||  ||||||||| |||||||||||||||||||||||   || |||||||| ||    
T  18889311 ttcacttggtttcatactcacttcaatccg-aaattcattaaactatactaactcgatt-aacaatgtgtttagtaggattcagggtatatataatggtc 18889408  T
Q  101 ttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagt 148  Q
    |||||||||||||||||||| || |||| |||||||||||||||||||    
T  18889409 ttacaagttgaaaggaacatttagaaatactcaaaaggatcccctagt 18889456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 18892548 - 18892683
Alignment:
Q  11 ttcacactcacttcaatccacaaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgatcttacaagttg 110  Q
    |||| ||||||||||||||  |||||||||||||||||  ||||||||| |||||||||||||||||||||||   || |||||||| ||||||||||||    
T  18892548 ttcatactcacttcaatccg-aaattcattaaactatactaactcgatt-aacaatgtgtttagtaggattcagggtatatataatggtcttacaagttg 18892645  T
Q  111 aaaggaacatctaaaaatgctcaaaaggatcccctagt 148  Q
    |||||||||| || |||| |||||||||||||||||||    
T  18892646 aaaggaacatttagaaatactcaaaaggatcccctagt 18892683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 112 - 299
Target Start/End: Original strand, 14865166 - 14865355
Alignment:
Q  112 aaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgat-ggctagt 208  Q
    |||||||| ||| || | |||||||||||||| |||||||||| |||||||||| |||  ||||||||||   |||  |||||||||||||  |||||||    
T  14865166 aaggaacacctagaagtactcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcag-ttcgcttaagcgaacggctagt 14865264  T
Q  209 tcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
    |||||||||||||| ||||| |||| |||||||||| | |||||||||| |||||  | | |||||| ||||||||||||| | |||||||    
T  14865265 tcgcttaagcgaccagcttagagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattcttggcaaaatcaaa 14865355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 41 - 184
Target Start/End: Original strand, 17157443 - 17157587
Alignment:
Q  41 aaactatatcaactcgatttaacaatgtgtttagtaggattcaaaata--catataatgatcttacaagttgaaaggaacatctaaaaatgctcaaaagg 138  Q
    |||||||| |||||| | |||||||||||||||||||||||||   ||  ||||||||| ||||||||| |||||||||||| || || | |||||||||    
T  17157443 aaactataccaactc-acttaacaatgtgtttagtaggattcagggtatgcatataatggtcttacaagctgaaaggaacatttagaagtactcaaaagg 17157541  T
Q  139 atcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtc 184  Q
      | |||||||||||||||||  |||||| ||||||||||||||||    
T  17157542 ggctcctagtgcacgaggcaaaattcaaaggtggctgactaaggtc 17157587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 171 - 282
Target Start/End: Complemental strand, 41455834 - 41455722
Alignment:
Q  171 ggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagt 269  Q
    |||||||||||||   |||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||| | |||||||||| |||||  | ||    
T  41455834 ggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggt 41455735  T
Q  270 tcgcttgagcgaa 282  Q
    |||||||||||||    
T  41455734 tcgcttgagcgaa 41455722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 257
Target Start/End: Complemental strand, 13324525 - 13324376
Alignment:
Q  109 tgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggcta 206  Q
    |||||| |||||||   ||||||||||||| ||||||| ||||||| ||||  |||| ||||||||||||||||| ||| || ||||||||||| ||||     
T  13324525 tgaaagaaacatctttgaatgctcaaaagggtcccctaatgcacgaagcaaaattcagaaagtggctgactaaggctcagct-cgcttaagcgaaggctg 13324427  T
Q  207 gttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacgg 257  Q
    | ||||||||||||| ||||| ||| |||| |||||| |||||||| ||||    
T  13324426 gctcgcttaagcgactggcttgcagaaagtttgggttttgctcgctgacgg 13324376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 17131147 - 17131240
Alignment:
Q  206 agttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
    |||||||||||| |||| |||||||||| |||||||||| | |||||||||| |||||    | |||||| ||||||||||||| |||||||||    
T  17131147 agttcgcttaagtgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcatggctcgcttaagcgaattcttggcagaatcaaa 17131240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 17241201 - 17241124
Alignment:
Q  205 tagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    ||||||||||||||||||| |||| ||  |||  |||||| ||||||| ||||||||||||| |||||||||||||||    
T  17241201 tagttcgcttaagcgaccgacttatagagagttggggttccgctcgctgacggttcgcttgcggttcgcttgagcgaa 17241124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 12034072 - 12034014
Alignment:
Q  206 agttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgctt 264  Q
    ||||||||||||||||| |||||||||| |||||||||  | |||||||||| ||||||    
T  12034072 agttcgcttaagcgaccagcttacagtaggtctgggtttagttcgcttacgggtcgctt 12034014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 13313613 - 13313539
Alignment:
Q  109 tgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg 182  Q
    |||||| |||||||  |||||||||||||| ||||||| ||||||| ||||  |||| |||||||||||||||||    
T  13313613 tgaaagaaacatctttaaatgctcaaaagggtcccctaatgcacgaagcaaaattcagaaagtggctgactaagg 13313539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 12034125 - 12034078
Alignment:
Q  133 aaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaa 180  Q
    |||||| ||||||||||||||| |||||||||| || |||||||||||    
T  12034125 aaaagggtcccctagtgcacgaagcaaggttcagaaatggctgactaa 12034078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 13302937 - 13302863
Alignment:
Q  109 tgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg 182  Q
    |||||| |||||||   ||||||||||||| ||||||| ||||||| ||||  |||| |||||||||||||||||    
T  13302937 tgaaagaaacatctttgaatgctcaaaagggtcccctaatgcacgaagcaaaattcagaaagtggctgactaagg 13302863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 17131091 - 17131141
Alignment:
Q  130 ctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaa 180  Q
    ||||||||| ||||||||||||||| ||||| |||||||  ||||||||||    
T  17131091 ctcaaaagggtcccctagtgcacgaagcaagattcaaaaaaggctgactaa 17131141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 24192544 - 24192578
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgacc 222  Q
    ||||||||||||||||||| |||||||||||||||    
T  24192544 ttcgcttaagcgatggctacttcgcttaagcgacc 24192578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 13302856 - 13302808
Alignment:
Q  209 tcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacgg 257  Q
    ||||||||||||||||||| ||| |||| |||||| |||||||| ||||    
T  13302856 tcgcttaagcgaccggcttgcagaaagtttgggttttgctcgctgacgg 13302808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 59 - 266
Target Start/End: Complemental strand, 18408728 - 18408520
Alignment:
Q  59 ttaacaatgtgtttagtaggattcaaaatacatataatgatcttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggca 158  Q
    ||||||||||||| |||||||||||   || |||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  18408728 ttaacaatgtgttcagtaggattcagggtatatataatggtcttacaagttgaaaggaacatttaaaaatgctcaaaagaatcccctagtgcacgaggca 18408629  T
Q  159 aggttc-aaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacgg 257  Q
    | |||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| ||||  |||||| ||||||| ||||    
T  18408628 aagttcaaaaagtggctgactaaggtcattttcgcttaagcgacggctagtttgcttaagcgaccggcttacagaaagttggggttccgctcgctaacgg 18408529  T
Q  258 ttcgcttgc 266  Q
    |||||||||    
T  18408528 ttcgcttgc 18408520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 299
Target Start/End: Original strand, 19236299 - 19236410
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattctt 287  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| | ||||||| || |||||  | | |||||| |||||||||||    
T  19236299 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatgggtcgctcacggctcgcttaagcgaattctt 19236398  T
Q  288 ggtagaatcaaa 299  Q
    || |||||||||    
T  19236399 ggcagaatcaaa 19236410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 190 - 299
Target Start/End: Original strand, 22467181 - 22467290
Alignment:
Q  190 cgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttgg 289  Q
    ||||||||||| ||||||||||||||| ||||| |||||||||| |||||||||| | ||||||| || |||||  | | |||||| |||||||||||||    
T  22467181 cgcttaagcgacggctagttcgcttaaccgaccagcttacagtaggtctgggttcagttcgcttatgggtcgctcacggctcgcttaagcgaattcttgg 22467280  T
Q  290 tagaatcaaa 299  Q
     |||||||||    
T  22467281 cagaatcaaa 22467290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 23527967 - 23528063
Alignment:
Q  187 cttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||| | |||||||||| |||||  | |||||||||||||||    
T  23527967 cttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 23528063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 188 - 299
Target Start/End: Original strand, 22460555 - 22460666
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattctt 287  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||   ||||||| || || ||  | | |||||| |||||||||||    
T  22460555 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcaattcgcttatgggtcactcacggctcgcttaagcgaattctt 22460654  T
Q  288 ggtagaatcaaa 299  Q
    || |||||||||    
T  22460655 ggcagaatcaaa 22460666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 22439370 - 22439321
Alignment:
Q  211 gcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttc 260  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22439370 gcttaagcgaccggcttacagtaagtctgggttctgctcgcttaaggttc 22439321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 282
Target Start/End: Original strand, 34829426 - 34829577
Alignment:
Q  133 aaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttaca 230  Q
    |||||| ||||||||||||||| |||| ||||| |||  || ||||||||| |||  ||||||||||||| || ||| |||||||||||||| ||| |||    
T  34829426 aaaagggtcccctagtgcacgaagcaaagttcagaaaaaggttgactaaggctcag-ttcgcttaagcgaagggtagctcgcttaagcgaccagctcaca 34829524  T
Q  231 gtaagtctgggttct-gctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
      | ||  ||||||| |||| || |||||||||| ||||||||||||||||||    
T  34829525 aaaggttggggttctcgctcactcacggttcgctcgcagttcgcttgagcgaa 34829577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 22439436 - 22439361
Alignment:
Q  126 aatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||||| | | |||||||| |||||||| ||||||||||||||||| ||| ||||||||||    
T  22439436 aatgctcaaaagggtcccctaatacgcgaggcaacgttcaaaaagtggctgactaaggtcaactttgcttaagcga 22439361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 28890053 - 28889978
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgct 263  Q
    ||||||||||||| |||||  ||||||||||||||  ||||||||| |||||||||| | |||||||||| |||||    
T  28890053 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28889978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 28896757 - 28896682
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgct 263  Q
    ||||||||||||| |||||  ||||||||||||||  ||||||||| |||||||||| | |||||||||| |||||    
T  28896757 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28896682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 28910005 - 28909930
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgct 263  Q
    ||||||||||||| |||||  ||||||||||||||  ||||||||| |||||||||| | |||||||||| |||||    
T  28910005 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28909930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 28931697 - 28931622
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgct 263  Q
    ||||||||||||| |||||  ||||||||||||||  ||||||||| |||||||||| | |||||||||| |||||    
T  28931697 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28931622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 28946400 - 28946325
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgct 263  Q
    ||||||||||||| |||||  ||||||||||||||  ||||||||| |||||||||| | |||||||||| |||||    
T  28946400 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28946325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 18711959 - 18712224
Alignment:
Q  1 tttcacttggtt-cacactcacttcaatccacaaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgat 99  Q
    |||||||||||| || ||||||| ||||||  |||||||||||| |  | ||| |||||| ||||||||||| |||||||||||   || |||||||| |    
T  18711959 tttcacttggtttcatactcactccaatccgaaaattcattaaattccaccaattcgatt-aacaatgtgttaagtaggattcagggtatatataatggt 18712057  T
Q  100 cttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggc-aaggttcaaaa-gtggctgactaaggtcatcttcgcttaag 197  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||    
T  18712058 cttacaagttgaaaggaacatttaaaaatactcaaaagaatcccctagtgcacgaggcaaaagttcaaaaggtggctgactaaggtcatcttcgcttaag 18712157  T
Q  198 cgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgctt 264  Q
    ||| ||||||||||||||||||||| |||||||| ||||  |||||| ||||||| ||||| |||||    
T  18712158 cgacggctagttcgcttaagcgaccagcttacagaaagttggggttccgctcgctaacggtacgctt 18712224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 19663983 - 19663794
Alignment:
Q  1 tttcacttggtt-cacactcacttcaatccacaaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgat 99  Q
    |||||||||||| || || |||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||   || |||||||| |    
T  19663983 tttcacttggtttcatacccacttcaatccacaaattcattaaactatacccactcgatt-aacaatgtgtttagtaggattcagggtatatataatggt 19663885  T
Q  100 cttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttc 190  Q
    |||||||||| |||||||||  || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19663884 cttacaagttaaaaggaacacttagaaatactcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttc 19663794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 11157454 - 11157553
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttc-aaaagtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| |  |||||||||||||||||||||| |||||||||||| |||| |||||||| |||||||||||||||||||||||||||    
T  11157454 tacaagttgaaagaaacatttttaaatgctcaaaaggatcccctaatgcacgaggcaaagttcaaaaagtggttgactaaggtcatcttcgcttaagcga 11157553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 20858416 - 20858305
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattctt 287  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| | |||||||||| |||||  | | |||||| |||||||||||    
T  20858416 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattctt 20858317  T
Q  288 ggtagaatcaaa 299  Q
    || |||||||||    
T  20858316 ggcagaatcaaa 20858305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 188 - 299
Target Start/End: Original strand, 21705674 - 21705785
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattctt 287  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| | |||||||||| |||||  | | |||||| |||||||||||    
T  21705674 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattctt 21705773  T
Q  288 ggtagaatcaaa 299  Q
    || |||||||||    
T  21705774 ggcagaatcaaa 21705785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 188 - 299
Target Start/End: Original strand, 21710217 - 21710328
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattctt 287  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| | ||||||| ||||||||  | | |||||| |||||||||||    
T  21710217 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatggttcgctcacggctcgcttaagcgaattctt 21710316  T
Q  288 ggtagaatcaaa 299  Q
    || |||||||||    
T  21710317 ggcagaatcaaa 21710328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 282
Target Start/End: Original strand, 19961521 - 19961682
Alignment:
Q  122 taaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcg 219  Q
    ||||||| ||||||||| ||||||||||||||| |||| ||||| | || |||||||||||| ||||| |||||||||||| || ||| |||||||||||    
T  19961521 taaaaatactcaaaagggtcccctagtgcacgaagcaaagttcagatagaggctgactaaggctcatc-tcgcttaagcgaagggtagctcgcttaagcg 19961619  T
Q  220 accggcttacagtaagtctgggttct-gctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    ||| || ||||| |||| ||| |||| ||||||| ||||||||||||| ||||||| |||||||    
T  19961620 accagc-tacaggaagtttggattctcgctcgctcacggttcgcttgcggttcgctcgagcgaa 19961682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 20851789 - 20851678
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattctt 287  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| | ||||||| || |||||  | | |||||| |||||||||||    
T  20851789 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatgggtcgctcacggctcgcttaagcgaattctt 20851690  T
Q  288 ggtagaatcaaa 299  Q
    || |||||||||    
T  20851689 ggcagaatcaaa 20851678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 41111277 - 41111373
Alignment:
Q  187 cttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||| | |||||||||| |||||  | |||||||||||||||    
T  41111277 cttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 41111373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 252
Target Start/End: Complemental strand, 22030491 - 22030340
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaagg-ttcaaaagtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| |||||   | |||||||||||||||  ||||||||| || ||||   || |||||||||||||||||  | |||||||||||||||    
T  22030491 tacaagttgaaagaaacattatagaatgctcaaaaggatttcctagtgcaagaagcaaaaattaaaaagtggctgactaagaccttcttcgcttaagcga 22030392  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgct 252  Q
     |||| | ||||||||||||| |||||||||  |||  | ||||||||||||    
T  22030391 aggctggctcgcttaagcgactggcttacagagagttggtgttctgctcgct 22030340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 32 - 315
Target Start/End: Complemental strand, 15261 - 14977
Alignment:
Q  32 aaattcattaaa-ctatatcaactcgatttaacaatgtgtttagtaggattcaaaatac--atataatgatcttacaagttgaaaggaacatctaaaaat 128  Q
    |||||||||||| ||||| |||||| | |||||||||||||||||||||||||   ||   |||||||| |||||||||||||||||||||| || || |    
T  15261 aaattcattaaaactataccaactc-acttaacaatgtgtttagtaggattcagggtatgtatataatggtcttacaagttgaaaggaacatttagaagt 15163  T
Q  129 gctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggctta 228  Q
     |||||||||  | |||||||||||||| ||  |||||| ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  15162 actcaaaaggg-ctcctagtgcacgaggtaaaattcaaaggtggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggctta 15064  T
Q  229 cagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaaaaggttcctcgctcac 315  Q
    |||||||||||||||| ||||||||||||||||||  | ||||||||||||||| |  ||  |||||||||| ||||  ||||||||    
T  15063 cagtaagtctgggttcagctcgcttacggttcgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 14977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 14862 - 14828
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgacc 222  Q
    ||||||||||||||||||| |||||||||||||||    
T  14862 ttcgcttaagcgatggctacttcgcttaagcgacc 14828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 126 - 299
Target Start/End: Complemental strand, 4011 - 3837
Alignment:
Q  126 aatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccgg 224  Q
    ||||||||||||| || |||| |||||||||||| |||||||| ||||||||||||||||| |||||||||||||| | |||||||||||||||||||||    
T  4011 aatgctcaaaagggtctcctaatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgaccgg 3912  T
Q  225 cttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
    |||||||| ||||||||||||||||  ||||||||||||||| |||||||| ||||||| ||||| |||||||||    
T  3911 cttacagtgagtctgggttctgctcaattacggttcgcttgcggttcgcttaagcgaatccttggcagaatcaaa 3837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 35 - 200
Target Start/End: Complemental strand, 24513622 - 24513457
Alignment:
Q  35 ttcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgatcttacaagttgaaaggaacatctaaaaatgctcaa 134  Q
    ||||||||| || | |||||||||| ||||||||||| |||||||||||   || |||||||| |||||||||||||||||||||| |||||||||||||    
T  24513622 ttcattaaattaaaccaactcgatt-aacaatgtgttcagtaggattcagggtatatataatggtcttacaagttgaaaggaacatttaaaaatgctcaa 24513524  T
Q  135 aaggatcccctagtgcacgaggcaaggttc-aaaagtggctgactaaggtcatcttcgcttaagcga 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24513523 aaggatcccctagtgcacgaggcaaggttcaaaaagtggctgactaaggtcatcttcgcttaagcga 24513457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 126 - 265
Target Start/End: Complemental strand, 21565899 - 21565759
Alignment:
Q  126 aatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccgg 224  Q
    ||||||||||||| || |||| |||||||||||| |||||||| ||||||||||||||||| |||||||||||||| | | |||||||||||||||||||    
T  21565899 aatgctcaaaagggtctcctaatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagcgaccgg 21565800  T
Q  225 cttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21565799 cttacagtaagtctgggttctgctcgcttacggttcgcttg 21565759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 102 - 264
Target Start/End: Original strand, 18799762 - 18799925
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||||||||| |   |||||| |||||| ||||||| |||| ||||||| |||||||| |||||||||||||||   ||||||||||||||    
T  18799762 tacaagttgaaaggaacatgtttgaatgctaaaaagggtcccctaatgcatgaggcaaagttcaaaaagtggctgactaaggttgacttcgcttaagcga 18799861  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgctt 264  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18799862 cggctagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttacggttcgctt 18799925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 63 - 200
Target Start/End: Original strand, 9186764 - 9186902
Alignment:
Q  63 caatgtgtttagtaggattcaaaatacatataatgatcttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggt 162  Q
    ||||||||| |||||||||||   || |||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||    
T  9186764 caatgtgttcagtaggattcagggtatatataatggtcttacaagttgaaaggaacatttagaaatgctcaaaaggatcccctagtgcacgaagcaaagt 9186863  T
Q  163 tc-aaaagtggctgactaaggtcatcttcgcttaagcga 200  Q
    || ||||||||||||||||||||||||||||||||||||    
T  9186864 tcaaaaagtggctgactaaggtcatcttcgcttaagcga 9186902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 102 - 282
Target Start/End: Complemental strand, 19472077 - 19471897
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||| | ||||| | ||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||| |||  | |||||||||||||||    
T  19472077 tacaagttgaaggaaacatttcaaaatgctcaaaaggatcccctagtgcacgaagcaaaattcaaaaagtggctgac-aagaccttcttcgcttaagcga 19471979  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    ||||| | |||||||||||||||||| |||| ||||  |||||| ||||||| |||| |||||||| |||||||| ||||||    
T  19471978 tggctggctcgcttaagcgaccggctcacagaaagttggggttccgctcgctaacggctcgcttgcggttcgcttaagcgaa 19471897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 171 - 315
Target Start/End: Complemental strand, 29614882 - 29614738
Alignment:
Q  171 ggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagt 269  Q
    |||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| | |||  | ||    
T  29614882 ggctgactaaggctca-cttcgcttaagcgacggctagttcgcttaagcgaccgacttacagtaggtctgggttcagctcgcttacgggttgctcacggt 29614784  T
Q  270 tcgcttgagcgaattcttggtagaatcaaaaaggttcctcgctcac 315  Q
    ||||||||||||| |  ||  |||||||||| ||||  ||||||||    
T  29614783 tcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 29614738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 20008604 - 20008493
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattctt 287  Q
    ||||||||||| | ||||||||||||||||||||| |||||||||| |||||||||| | |||||||||| |||||  | | |||||| |||||||||||    
T  20008604 ttcgcttaagcaacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattctt 20008505  T
Q  288 ggtagaatcaaa 299  Q
    || |||||||||    
T  20008504 ggcagaatcaaa 20008493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 34640723 - 34640575
Alignment:
Q  171 ggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagt 269  Q
    |||||||||||||   |||||||||||||| ||||||||||||||||||||| |||||||||| | |||||| || | |||||||||| |||||  | ||    
T  34640723 ggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacggt 34640624  T
Q  270 tcgcttgagcgaattcttggtagaatcaaaaaggttcctcgctcacagg 318  Q
    ||||||||||||| | | |  |||||||||| ||||  |||||||||||    
T  34640623 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34640575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 34647397 - 34647249
Alignment:
Q  171 ggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagt 269  Q
    |||||||||||||   |||||||||||||| ||||||||||||||||||||| |||||||||| | |||||| || | |||||||||| |||||  | ||    
T  34647397 ggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacggt 34647298  T
Q  270 tcgcttgagcgaattcttggtagaatcaaaaaggttcctcgctcacagg 318  Q
    ||||||||||||| | | |  |||||||||| ||||  |||||||||||    
T  34647297 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34647249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 264
Target Start/End: Original strand, 25396496 - 25396659
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| | | ||||||||||||||| ||||||||||| | |||   ||||||| |||| ||||||||  |  ||||||||||||||    
T  25396496 tacaagttgaaagaaacattttagaatgctcaaaaggattccctagtgcactaagcataattcaaaaagtggttgactaagacctacttcgcttaagcga 25396595  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgctt 264  Q
     |||| | ||||||||||||||| |||||||  |||  |||||| ||||||| |||||||||||    
T  25396596 cggctggctcgcttaagcgaccgacttacagagagttggggttccgctcgctaacggttcgctt 25396659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 12167700 - 12167796
Alignment:
Q  187 cttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||| | |||||||||| |||||  | |||||||||||||||    
T  12167700 cttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 12167796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 19286609 - 19286705
Alignment:
Q  187 cttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||| | |||||||||| |||||  | |||||||||||||||    
T  19286609 cttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 19286705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 19877793 - 19877889
Alignment:
Q  187 cttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||| | |||||||||| |||||  | |||||||||||||||    
T  19877793 cttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 19877889  T

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Target: chr6; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 19883569 - 19883665
Alignment:
Q  187 cttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||| | |||||||||| |||||  | |||||||||||||||    
T  19883569 cttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 19883665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 21365195 - 21365067
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattctt 287  Q
    ||||||||||||| |||||| ||||||||||||||  ||||||||| |||||||||| | |||||||||| |||||  | ||||||||||||||| | |     
T  21365195 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttg 21365096  T
Q  288 ggtagaatcaaaaaggttcctcgctcaca 316  Q
    |  |||||||||| ||||  |||||||||    
T  21365095 gacagaatcaaaatggtttttcgctcaca 21365067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 23969177 - 23969049
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattctt 287  Q
    ||||||||||||| |||||| ||||||||||||||  ||||||||| |||||||||| | |||||||||| |||||  | ||||||||||||||| | |     
T  23969177 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttg 23969078  T
Q  288 ggtagaatcaaaaaggttcctcgctcaca 316  Q
    |  |||||||||| ||||  |||||||||    
T  23969077 gacagaatcaaaatggtttttcgctcaca 23969049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 25470438 - 25470290
Alignment:
Q  171 ggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagt 269  Q
    |||||||||||||   |||||||||||||| | |||||||||||||||||||  ||||||||| | |||||| || | |||||||||| |||||  | ||    
T  25470438 ggctgactaaggttcacttcgcttaagcgacgtctagttcgcttaagcgaccaacttacagtaggttctgggctcagttcgcttacgggtcgctcacggt 25470339  T
Q  270 tcgcttgagcgaattcttggtagaatcaaaaaggttcctcgctcacagg 318  Q
    ||||||||||||||| | |  |||||||||| ||||  |||||||||||    
T  25470338 tcgcttgagcgaattttggacagaatcaaaatggtttttcgctcacagg 25470290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 263
Target Start/End: Complemental strand, 19300460 - 19300318
Alignment:
Q  122 taaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcg 219  Q
    ||||||| ||||||||| ||||||||||||||| |||| ||||| | || |||||||||||| ||||| |||||||||||| || ||| |||||||||||    
T  19300460 taaaaatactcaaaagggtcccctagtgcacgaagcaaagttcagatagaggctgactaaggctcatc-tcgcttaagcgaagggtagctcgcttaagcg 19300362  T
Q  220 accggcttacagtaagtctgggttct-gctcgcttacggttcgct 263  Q
    ||| || ||||| |||| ||| |||| ||||||| ||||||||||    
T  19300361 accagc-tacaggaagtttggattctcgctcgctcacggttcgct 19300318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 282
Target Start/End: Complemental strand, 19786587 - 19786491
Alignment:
Q  187 cttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaag-tctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| | |||||||||   |||||||||| |||||  | |||||||||||||||    
T  19786587 cttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcacttcgcttacgggtcgctcacggttcgcttgagcgaa 19786491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 24513469 - 24513412
Alignment:
Q  208 ttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    ||||||||||||||||||| |||| |||| ||||||| ||||||| ||||||||||||    
T  24513469 ttcgcttaagcgaccggctcacagaaagtttgggttccgctcgctaacggttcgcttg 24513412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 11289384 - 11289294
Alignment:
Q  133 aaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgacc 222  Q
    |||||| |||||||||||||||||||| ||||| |||| ||||| |||||| ||| | |||||||||||| || ||| | ||||||||||||    
T  11289384 aaaagggtcccctagtgcacgaggcaaagttcagaaaggggctggctaaggctcagc-tcgcttaagcgaagggtagcttgcttaagcgacc 11289294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 103 - 315
Target Start/End: Original strand, 6825 - 7024
Alignment:
Q  103 acaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcgatg 202  Q
    ||||||||||||  |||| || |||| || ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |    
T  6825 acaagttgaaagtgacatttagaaatact-aaaagga-cccctagtgcacgaggcaaagttcaaaagtggctgactgaggtcatcttcgcttaagcgacg 6922  T
Q  203 gctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaaaag 302  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||           ||||||| ||||| ||| ||||||||||||    
T  6923 gctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacgattcg-----------cttgagcaaattcctggcagaatcaaaaag 7011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 102 - 265
Target Start/End: Complemental strand, 102661 - 102497
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcga 200  Q
    |||| |||||||| ||| | | ||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  102661 tacaggttgaaagaaaccttttaaaatactcaaaaggatcccctagtgcacgaggcaaggttcaaaaagtggccgactaaggtcatcttcgcttaagcga 102562  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    ||||| ||||||||||||||||| ||||||| ||||  |||||| ||||||| ||||||||||||    
T  102561 tggctggttcgcttaagcgaccgacttacagaaagttggggttccgctcgctgacggttcgcttg 102497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 102 - 265
Target Start/End: Original strand, 10623 - 10787
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcga 200  Q
    |||||||| ||||| |||| |  |||||||  || |||||||||| |||||||||||| |||||||| ||||||||||||| ||| ||||||||||||||    
T  10623 tacaagttaaaagggacatgtttaaatgctacaagggatcccctaatgcacgaggcaaagttcaaaaagtggctgactaagatcaacttcgcttaagcga 10722  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10723 cggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttagggttcgcttg 10787  T

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Target: scaffold0139 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 102 - 265
Target Start/End: Complemental strand, 15730 - 15567
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcgat 201  Q
    ||||||||||||| ||||| |  ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  15730 tacaagttgaaagaaacatttttaaatgctcaaaaggatctcctagtgcacgaggcaaagttcaaaagtggctgactaaggtcatcttcgcttaagcgac 15631  T
Q  202 ggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    || | ||||||||||||||||| |||| ||  ||| ||||||  | ||||| ||||||||||||    
T  15630 ggttggttcgcttaagcgaccgtcttatagagagtttgggtttcgttcgctaacggttcgcttg 15567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 126 - 282
Target Start/End: Original strand, 692 - 849
Alignment:
Q  126 aatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccgg 224  Q
    ||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  692 aatgctcaaaaggatcccctaatgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctggttcgcttaagcgaccgg 791  T
Q  225 cttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||||||  |||  |||||   |||||| ||| ||||||||| |||||||| ||||||    
T  792 cttacagagagttggggtttccctcgctaacgtttcgcttgcggttcgcttaagcgaa 849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 126 - 265
Target Start/End: Complemental strand, 4329 - 4189
Alignment:
Q  126 aatgctcaaaaggatcccctagtgcacgaggcaaggttcaa-aagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccgg 224  Q
    ||||||||||||| || |||| |||||||||||| |||||| ||||| ||||||||||||| |||||||||||||| | ||||||||||||||||| | |    
T  4329 aatgctcaaaaggttctcctaatgcacgaggcaacgttcaagaagtgactgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgatcag 4230  T
Q  225 cttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  4229 cttacagtaagtctgggttctgctcgattacggttcgcttg 4189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 102 - 265
Target Start/End: Original strand, 116178 - 116342
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaag-tggctgactaaggtcatcttcgcttaagcga 200  Q
    |||| |||||||| ||||| | ||||| |||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||    
T  116178 tacaggttgaaagaaacattttaaaatactcaaaaggatcccctagtgcacgaggcaaagttcaaaaaatggctgactaaggtcatcttcgcttaagcga 116277  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
     |||| |||||||||||||||||||||||||  |||  || ||  ||||||| ||||||||||||    
T  116278 cggctggttcgcttaagcgaccggcttacagagagttgggatttcgctcgctaacggttcgcttg 116342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 102 - 264
Target Start/End: Complemental strand, 129380 - 129216
Alignment:
Q  102 tacaagttgaaaggaacatct-aaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcg 199  Q
    ||||||||||| | ||||| | |||||||||||||||||||||||||||||||| ||||  ||||||| |||||||||||||  | ||||||||||||||    
T  129380 tacaagttgaaggaaacatttcaaaaatgctcaaaaggatcccctagtgcacgaagcaaaattcaaaaagtggctgactaagaccttcttcgcttaagcg 129281  T
Q  200 atggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgctt 264  Q
    | |||| | |||||||||||||||||| |||| ||||  |||||| ||||||| |||||||||||    
T  129280 acggctggctcgcttaagcgaccggctcacagaaagttggggttccgctcgctaacggttcgctt 129216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 102 - 261
Target Start/End: Original strand, 65417 - 65577
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||| ||| |||||||| ||    
T  65417 tacaagttgaaagaaacattttaaaatgttcaaaaggatcccctagtgcacgaggcaaaattcaaaaagtggctgactaaggtcttctccgcttaagtga 65516  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcg 261  Q
     |||| |||||||||||||||||||||||||  |||  |||||| ||||||| ||||||||    
T  65517 cggctggttcgcttaagcgaccggcttacagagagttggggttccgctcgctaacggttcg 65577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 252
Target Start/End: Original strand, 1388 - 1531
Alignment:
Q  110 gaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcgatggctagt 208  Q
    ||||| ||||| | ||||||||||||||||| |||||||||||||  | |  | ||||| |||||||||||||  | | ||||||||||||| |||| |     
T  1388 gaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaaacgacatccaaaaagtggctgactaagaccttgttcgcttaagcgaaggctggc 1487  T
Q  209 tcgcttaagcgaccggcttacagtaagtctgggttctgctcgct 252  Q
    |||||||||||||||||| ||||  |||  |||||| |||||||    
T  1488 tcgcttaagcgaccggctgacagagagttggggttccgctcgct 1531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 35006 - 34906
Alignment:
Q  165 aaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgctt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| ||||||| |||||||||||    
T  35006 aaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttgaggttccgctcgctgacggttcgctt 34907  T
Q  265 g 265  Q
    |    
T  34906 g 34906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 43795 - 43708
Alignment:
Q  32 aaattcattaaactatatcaactcgatttaacaatgtgtttagtaggattcaaaatacatataatgatcttacaagttgaaaggaacat 120  Q
    |||||||||||| || | ||| |||||| ||||||||||| ||||||||||||  || |||||||| ||||| ||||||||||||||||    
T  43795 aaattcattaaattacaccaattcgatt-aacaatgtgttcagtaggattcaaggtatatataatggtcttataagttgaaaggaacat 43708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 299
Target Start/End: Complemental strand, 4382 - 4217
Alignment:
Q  134 aaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagt 232  Q
    ||||| ||||||||||||||| ||||| |||| ||  |||||||||| | |||  ||||||||||||||||||||||||||||||||||| |||||||||    
T  4382 aaagggtcccctagtgcacgaagcaagattcagaaaaggctgactaacgctcag-ttcgcttaagcgatggctagttcgcttaagcgaccagcttacagt 4284  T
Q  233 aagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
    | |||||||||| | |||||||||| |||||  | | |||||| ||||||||||||| |||||||||    
T  4283 aggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattcttggcagaatcaaa 4217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 50 - 205
Target Start/End: Original strand, 1661 - 1817
Alignment:
Q  50 caactcgatttaacaatgtgtttagtaggattcaaaa-tacatataatgatcttacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagt 148  Q
    |||||||||| | ||||||||| |||||||||||    || |||||| | || ||||||||||||| ||||| | |||||||||||||||||||||||||    
T  1661 caactcgatt-accaatgtgttcagtaggattcaggggtatatataaaggtcatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagt 1759  T
Q  149 gcacgaggcaaggttc-aaaagtggctgactaaggtcatcttcgcttaagcgatggct 205  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||| ||||    
T  1760 gcacgaggcaaaattcaaaaagtggctgactaaggtcatcttcgcttaagcgacggct 1817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 102 - 231
Target Start/End: Original strand, 1130 - 1260
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttc-aaaagtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||  ||| |||||||||||||||||  | |||||||||||||||    
T  1130 tacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagcaaaattcaaaaagtggctgactaagaccctcttcgcttaagcga 1229  T
Q  201 tggctagttcgcttaagcgaccggcttacag 231  Q
     |||| | |||||||||||||||||| ||||    
T  1230 cggctggctcgcttaagcgaccggctcacag 1260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 102 - 265
Target Start/End: Original strand, 30212 - 30376
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcg 199  Q
    ||||||||||||| ||||| | | ||||||||||||| ||||||||||||||| ||||  |||| ||||||||||||||||| ||| |||||||||||||    
T  30212 tacaagttgaaagaaacattttagaatgctcaaaagggtcccctagtgcacgaagcaaaattcagaaagtggctgactaaggctca-cttcgcttaagcg 30310  T
Q  200 atggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttg 265  Q
    | || | | ||||||||||||||||||||||| |||| | ||||  ||||||| ||||||||||||    
T  30311 aaggttggctcgcttaagcgaccggcttacagaaagtttaggtttcgctcgctcacggttcgcttg 30376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 299
Target Start/End: Complemental strand, 80224 - 80036
Alignment:
Q  112 aaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagtt 209  Q
    |||||||| ||| || | |||||||||||||| |||||||||| |||||||||| |||  ||||||||||   |||  ||||||||||||| |||||| |    
T  80224 aaggaacacctagaagtactcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcag-ttcgcttaagcgacggctagct 80126  T
Q  210 cgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
    |||||||||||||  ||||||||| |||||||||| | |||||||||| |||||  | | |||||| ||||||||||||| |||||||||    
T  80125 cgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattcttggcagaatcaaa 80036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 282
Target Start/End: Complemental strand, 81957 - 81776
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| | ||||||||||||||||| |||| ||| |||| ||||  ||||||| |||||||||||||  |  ||||||||||||||    
T  81957 tacaagttgaaagaaacattttaaaatgctcaaaaggattccctggtgtacgaagcaaaattcaaaaagtggctgactaagacctacttcgcttaagcga 81858  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
     |||| | ||||||||||||||| |||||||  |||   ||||  ||||||| || |||||||| | |||||||| ||||||    
T  81857 cggctggctcgcttaagcgaccgacttacagagagttgaggtttcgctcgctaacagttcgcttacggttcgcttaagcgaa 81776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 102 - 252
Target Start/End: Original strand, 121213 - 121364
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| | ||||||||||||||||| ||||||||||||| ||||   |||||| |||||||||||||  | |||||||||||||||    
T  121213 tacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaagcaaaagtcaaaaagtggctgactaagaccttcttcgcttaagcga 121312  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgct 252  Q
     |||| | |||||||||| ||||||||||||  |||  | ||||||||||||    
T  121313 aggctggctcgcttaagcaaccggcttacagagagttggtgttctgctcgct 121364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 102 - 252
Target Start/End: Original strand, 132090 - 132241
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaa-gtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| | ||||||||||||||||| ||||||||||||| ||||   |||||| |||||||||||||  | |||||||||||||||    
T  132090 tacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaagcaaaagtcaaaaagtggctgactaagaccttcttcgcttaagcga 132189  T
Q  201 tggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgct 252  Q
     |||| | |||||||||| ||||||||||||  |||  | ||||||||||||    
T  132190 aggctggctcgcttaagcaaccggcttacagagagttggtgttctgctcgct 132241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 126 - 282
Target Start/End: Original strand, 17503 - 17660
Alignment:
Q  126 aatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccg 223  Q
    ||||||||||||| || ||||||||||||  |||  |||| |||||||||||| |||| ||| |||||||||||||| |||| | |||||||||||||||    
T  17503 aatgctcaaaaggctcgcctagtgcacgaaacaaaattcagaaagtggctgaccaaggctca-cttcgcttaagcgaaggctggctcgcttaagcgaccg 17601  T
Q  224 gcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||||||| |||| ||||||  ||||||| || |||||||||| | || ||||||||||    
T  17602 gcttacagaaagtttgggtttcgctcgctcacagttcgcttgcgggtctcttgagcgaa 17660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 208 - 318
Target Start/End: Complemental strand, 12547 - 12437
Alignment:
Q  208 ttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaaaaggttcc 307  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||  | ||||||||||||||| |  ||  |||||||||| ||||      
T  12547 ttcgcttaagcgaccggcttacagtaggtctgggttcagctcgcttacggttcgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttt 12448  T
Q  308 tcgctcacagg 318  Q
    |||||||||||    
T  12447 tcgctcacagg 12437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 187 - 315
Target Start/End: Original strand, 516 - 644
Alignment:
Q  187 cttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattct 286  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| | |||||||||| |||||  | ||||| ||||||||| | |    
T  516 cttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgattgagcgaacttt 615  T
Q  287 tggtagaatcaaaaaggttcctcgctcac 315  Q
     |  |||||||||| ||||  ||||||||    
T  616 ggacagaatcaaaatggtttttcgctcac 644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 3050 - 3149
Alignment:
Q  166 aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgctt 264  Q
    |||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||  ||||||| || ||||||||    
T  3050 aaagaggctgactaaggctca-cttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggtttcgctcgctcacagttcgctt 3148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 394 - 504
Alignment:
Q  208 ttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaaaaggttcc 307  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||| |||||||| |||||| |  ||  |||||||||| ||||      
T  394 ttcgcttaagcgactggcttacagaaagtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttt 493  T
Q  308 tcgctcacagg 318  Q
    |||||||||||    
T  494 tcgctcacagg 504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 7539 - 7649
Alignment:
Q  208 ttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaaaaggttcc 307  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||| |||||||| |||||| |  ||  |||||||||| ||||      
T  7539 ttcgcttaagcgactggcttacagaaagtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttt 7638  T
Q  308 tcgctcacagg 318  Q
    |||||||||||    
T  7639 tcgctcacagg 7649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 282
Target Start/End: Complemental strand, 19150 - 18972
Alignment:
Q  105 aagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttc-aaaagtggctgactaaggtcatcttcgcttaagcgatgg 203  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||  ||| |||||||||||||||||  | |||||||||| | || ||    
T  19150 aagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagcaaaattcaaaaagtggctgactaagaccctcttcgcttaggagacgg 19051  T
Q  204 ctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    || | ||| ||||||||| |||| ||||  |||  |||||| ||||||| | || |||||  | |||||||| ||||||    
T  19050 ctggctcggttaagcgactggctcacagacagttggggttccgctcgctaatggctcgctcacggttcgcttaagcgaa 18972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 51557 - 51678
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttc-aaaagtggctgactaaggtcatcttcgcttaagcga 200  Q
    ||||||||||||| ||||| | ||||||||||||||||| ||||||||||| | ||||  ||| |||||||||||||||||  | |||||||||||||||    
T  51557 tacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacaaagcaaaattcaaaaagtggctgactaagaccttcttcgcttaagcga 51656  T
Q  201 tggctagttcgcttaagcgacc 222  Q
     |||| | ||||||||| ||||    
T  51657 cggctggctcgcttaagtgacc 51678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 102 - 282
Target Start/End: Complemental strand, 493771 - 493589
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcg 199  Q
    |||||| | |||| ||||| ||||||| ||||||||| ||||||||||||||| |||||||||| |||  |||||||||||| |||  ||||||||||||    
T  493771 tacaagctaaaagaaacatttaaaaatactcaaaagggtcccctagtgcacgaagcaaggttcagaaaaaggctgactaaggctca-gttcgcttaagcg 493673  T
Q  200 atggctagttcgcttaagcgaccggcttacagtaagtctgggttct-gctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    | || ||| |||||||||||||| ||  |||  | ||   |||||| ||||||| ||||||||||  |||||||||||||||||    
T  493672 aagggtagctcgcttaagcgaccagcacacaaaaggttgaggttctcgctcgctcacggttcgctcacagttcgcttgagcgaa 493589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 251
Target Start/End: Original strand, 525075 - 525224
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcgat 201  Q
    ||||||||||||| ||||| | | |||||||| | |||| |||||||||| ||  |||  |  ||| ||||||||| |||| | |||||||||||||||     
T  525075 tacaagttgaaagaaacatttcagaatgctcagatggattccctagtgcaggaaacaaaatcaaaatgtggctgaccaaggccttcttcgcttaagcgaa 525174  T
Q  202 ggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgc 251  Q
    |||| ||||||||||||||||| |||||||  |||  | |||||||||||    
T  525175 ggctggttcgcttaagcgaccgtcttacagagagttggtgttctgctcgc 525224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 282
Target Start/End: Complemental strand, 11731 - 11571
Alignment:
Q  123 aaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaa-agtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcga 220  Q
    |||||| ||||||||| |||||||||||| || |||| ||||| | || |||||||||||| ||| || ||||||||||| || ||||||||||||||||    
T  11731 aaaaatactcaaaagggtcccctagtgcatgaagcaaagttcagatagaggctgactaaggctcagct-cgcttaagcgaagggtagttcgcttaagcga 11633  T
Q  221 ccggcttacagtaagtctgggttct-gctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    || || ||||| |||| ||| |||| ||||||| |||| |||||||| ||||||| |||||||    
T  11632 ccagc-tacaggaagtttggattctcgctcgctcacggatcgcttgcggttcgctcgagcgaa 11571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 134867 - 134960
Alignment:
Q  206 agttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaa 299  Q
    ||||||||||||||||| |||||||||| |||||||||| | |||||||||| |||||  | |||||||| ||||||||||||  |||||||||    
T  134867 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttaagcgaattcttgacagaatcaaa 134960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 315
Target Start/End: Complemental strand, 9295 - 9167
Alignment:
Q  187 cttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattct 286  Q
    |||||||||||||| |||||| ||||||||||||||  ||||||||| |||||||||| | ||||||| || |||||  | ||||||||||||||| | |    
T  9295 cttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttatgggtcgctcacggttcgcttgagcgaacttt 9196  T
Q  287 tggtagaatcaaaaaggttcctcgctcac 315  Q
     |  |||||||||| ||||  ||||||||    
T  9195 ggacagaatcaaaatggtttttcgctcac 9167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 91858 - 91764
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    ||||||||||||| |||||| ||||||||||||||  ||||||||| |||||||||| | |||||||||| |||||  | ||||||||| |||||    
T  91858 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgggcgaa 91764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 97584 - 97490
Alignment:
Q  188 ttcgcttaagcgatggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    ||||||||||||| |||||| ||||||||||||||  ||||||||| |||||||||| | |||||||||| |||||  | ||||||||| |||||    
T  97584 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgggcgaa 97490  T

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Target: scaffold0029; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 315
Target Start/End: Original strand, 111271 - 111378
Alignment:
Q  208 ttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggtagaatcaaaaaggttcc 307  Q
    |||||||||||||||  ||||||||| || ||||||| | |||||||||| |||||  | ||||||||||||||| | | |  |||||||||| ||||      
T  111271 ttcgcttaagcgaccaacttacagtaggtatgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttt 111370  T
Q  308 tcgctcac 315  Q
    ||||||||    
T  111371 tcgctcac 111378  T

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Target: scaffold0453 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 282
Target Start/End: Complemental strand, 11267 - 11113
Alignment:
Q  130 ctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggctt 227  Q
    ||||||||| ||||||||||||||| |||||||||| |||  |||||||||||| |||  ||||||||||||| || ||  |||||||||||||| |||     
T  11267 ctcaaaagggtcccctagtgcacgaagcaaggttcagaaaaaggctgactaaggctca-gttcgcttaagcgaagggtatctcgcttaagcgaccagctc 11169  T
Q  228 acagtaagtctgggttct-gctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||  | ||   |||||| ||||||| ||||||||||  |||||||||||||||||    
T  11168 acaaaaggttgtggttctcgctcgctcacggttcgctcacagttcgcttgagcgaa 11113  T

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Target: scaffold0261 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 282
Target Start/End: Complemental strand, 24285 - 24132
Alignment:
Q  130 ctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggctt 227  Q
    ||||||||| ||||||||||||||| |||| ||||| |||| | |||||||||| ||||| |||||||||||| || ||| |||||||||||||| |||     
T  24285 ctcaaaagggtcccctagtgcacgaagcaaagttcagaaagagactgactaaggctcatc-tcgcttaagcgaaggatagctcgcttaagcgaccagctc 24187  T
Q  228 acagtaagtctgggttct-gctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    |||  |||  ||| |||| ||| ||| || ||||||| ||||||||||||||||||    
T  24186 aca-aaaggttggattctcgcttgctcacagttcgctcgcagttcgcttgagcgaa 24132  T

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Target: scaffold0924 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 282
Target Start/End: Complemental strand, 1446 - 1376
Alignment:
Q  212 cttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaa 282  Q
    ||||||||||| |||||||||| |||||||||| | |||||||||| |||||  | |||||||||||||||    
T  1446 cttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 1376  T

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Target: scaffold0335 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 102 - 252
Target Start/End: Complemental strand, 3359 - 3209
Alignment:
Q  102 tacaagttgaaaggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttcaaaagtggctgactaaggtcatcttcgcttaagcgat 201  Q
    ||||||||||||| ||||| | | |||||||| | |||| |||||||||| ||  |||  |  ||| ||||||||| |||| | |||| ||||||||||     
T  3359 tacaagttgaaagaaacatttcagaatgctcagatggattccctagtgcaggaaacaaaatcaaaatgtggctgaccaaggccttctttgcttaagcgaa 3260  T
Q  202 ggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgct 252  Q
    |||| ||||||||||||||| | |||||||  |||  | ||||||||||||    
T  3259 ggctggttcgcttaagcgactgtcttacagagagttggtgttctgctcgct 3209  T

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Target: scaffold0720 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 3975 - 3882
Alignment:
Q  130 ctcaaaaggatcccctagtgcacgaggcaaggttc-aaaagtggctgactaa-ggtcatcttcgcttaagcgatggctagttcgcttaagcgacc 222  Q
    ||||||||| ||||||||||||||| ||||||||| ||||  |||||||||| | |||  ||||||||||||| || ||| ||||||||||||||    
T  3975 ctcaaaagggtcccctagtgcacgaagcaaggttcaaaaaaaggctgactaatgctca-gttcgcttaagcgaagggtagctcgcttaagcgacc 3882  T

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Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 18021 - 18121
Alignment:
Q  123 aaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcga 220  Q
    |||||| ||||||||| ||| ||||||||||| |||||||||| |||  |||||||||||| |||  |||||||||||||  | ||| ||||||||||||    
T  18021 aaaaatactcaaaagggtcctctagtgcacgaagcaaggttcagaaaaaggctgactaaggctca-gttcgcttaagcgaaaggtagctcgcttaagcga 18119  T
Q  221 cc 222  Q
    ||    
T  18120 cc 18121  T

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Target: scaffold1469 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 679 - 788
Alignment:
Q  114 ggaacatctaaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgc 212  Q
    |||||||||| |||| |||||||||| |||||||||||||| | || ||||| |||  || | ||||||| |   ||||||||||||| ||  || ||||    
T  679 ggaacatctagaaatactcaaaaggaacccctagtgcacgaagtaatgttcagaaaaaggttaactaaggcccagttcgcttaagcgaggggcagctcgc 778  T
Q  213 ttaagcgacc 222  Q
    ||||||||||    
T  779 ttaagcgacc 788  T

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Target: scaffold2054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 255
Target Start/End: Original strand, 51 - 185
Alignment:
Q  122 taaaaatgctcaaaaggatcccctagtgcacgaggcaaggttca-aaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcg 219  Q
    ||||||| || |||||| || ||||||||||||||||| ||||| |||| ||||  |||||| ||| | |||| ||||||| || ||| |||||||||||    
T  51 taaaaatacttaaaagggtctcctagtgcacgaggcaaagttcagaaagaggctagctaaggctcagc-tcgcataagcgaagggtagctcgcttaagcg 149  T
Q  220 accggcttacagtaagtctg-ggttctgctcgcttac 255  Q
    ||| || ||||| |||| || |||| |||||||||||    
T  150 accagc-tacaggaagtttgaggttttgctcgcttac 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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