View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0755_low_75 (Length: 325)

Name: NF0755_low_75
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0755_low_75
NF0755_low_75
[»] chr7 (13 HSPs)
chr7 (88-310)||(21592624-21592846)
chr7 (207-310)||(18153357-18153460)
chr7 (208-302)||(40635506-40635598)
chr7 (201-310)||(30770050-30770159)
chr7 (210-285)||(21801716-21801791)
chr7 (208-284)||(20093790-20093866)
chr7 (221-304)||(47295564-47295647)
chr7 (208-286)||(38612810-38612888)
chr7 (208-285)||(9548828-9548905)
chr7 (208-286)||(29165101-29165178)
chr7 (207-284)||(22705854-22705930)
chr7 (88-128)||(11952761-11952801)
chr7 (208-310)||(2249860-2249962)
[»] scaffold0096 (1 HSPs)
scaffold0096 (208-310)||(10741-10843)
[»] scaffold0265 (2 HSPs)
scaffold0265 (208-310)||(17282-17384)
scaffold0265 (212-310)||(15106-15204)
[»] chr6 (18 HSPs)
chr6 (208-310)||(29094885-29094987)
chr6 (207-301)||(27964962-27965056)
chr6 (208-310)||(17756886-17756988)
chr6 (208-286)||(18736253-18736331)
chr6 (207-284)||(23574648-23574725)
chr6 (210-286)||(18043531-18043607)
chr6 (207-286)||(15369491-15369570)
chr6 (208-310)||(29482820-29482922)
chr6 (208-284)||(15119590-15119665)
chr6 (208-284)||(21508507-21508583)
chr6 (207-284)||(4409451-4409529)
chr6 (208-286)||(14910858-14910936)
chr6 (214-284)||(18729176-18729246)
chr6 (208-310)||(23524249-23524351)
chr6 (210-286)||(19857705-19857781)
chr6 (233-283)||(18258488-18258538)
chr6 (208-284)||(8306314-8306390)
chr6 (208-286)||(15349496-15349574)
[»] chr1 (10 HSPs)
chr1 (208-310)||(21815425-21815527)
chr1 (212-310)||(21817605-21817703)
chr1 (208-310)||(24973756-24973858)
chr1 (210-309)||(49472432-49472531)
chr1 (207-310)||(19967287-19967390)
chr1 (210-310)||(19441982-19442082)
chr1 (207-310)||(33029022-33029125)
chr1 (207-286)||(9859224-9859303)
chr1 (210-283)||(38622059-38622132)
chr1 (208-284)||(8995308-8995384)
[»] chr5 (14 HSPs)
chr5 (208-310)||(23495576-23495678)
chr5 (208-310)||(20899465-20899567)
chr5 (207-310)||(36712518-36712621)
chr5 (208-310)||(13537958-13538060)
chr5 (213-310)||(33622365-33622462)
chr5 (208-310)||(22510210-22510312)
chr5 (208-286)||(24095445-24095523)
chr5 (208-286)||(28067893-28067972)
chr5 (208-294)||(5931435-5931521)
chr5 (261-302)||(5590619-5590660)
chr5 (231-286)||(19329816-19329871)
chr5 (208-290)||(38608526-38608608)
chr5 (247-284)||(42792735-42792772)
chr5 (218-286)||(41037524-41037592)
[»] chr4 (15 HSPs)
chr4 (208-310)||(13861542-13861644)
chr4 (208-310)||(16396135-16396237)
chr4 (208-310)||(18284484-18284586)
chr4 (207-304)||(25239929-25240026)
chr4 (208-283)||(8082300-8082375)
chr4 (208-310)||(45313374-45313476)
chr4 (206-286)||(12885532-12885612)
chr4 (206-286)||(10985581-10985661)
chr4 (207-286)||(26780683-26780762)
chr4 (232-286)||(8168008-8168062)
chr4 (208-294)||(12217799-12217885)
chr4 (261-310)||(17282412-17282461)
chr4 (87-118)||(10491356-10491387)
chr4 (208-294)||(3268579-3268665)
chr4 (208-284)||(28892167-28892243)
[»] chr2 (9 HSPs)
chr2 (208-310)||(27347397-27347499)
chr2 (208-310)||(25133793-25133895)
chr2 (208-286)||(3770513-3770591)
chr2 (208-310)||(23932908-23933010)
chr2 (208-285)||(23755687-23755764)
chr2 (207-286)||(41266064-41266143)
chr2 (208-310)||(19092949-19093051)
chr2 (207-284)||(3105459-3105536)
chr2 (232-310)||(26154875-26154953)
[»] chr8 (14 HSPs)
chr8 (208-302)||(25820953-25821047)
chr8 (210-310)||(11709609-11709709)
chr8 (200-284)||(22609355-22609438)
chr8 (207-304)||(41280676-41280773)
chr8 (209-284)||(32008884-32008959)
chr8 (208-286)||(7454521-7454599)
chr8 (208-286)||(33273391-33273469)
chr8 (207-310)||(7999877-7999980)
chr8 (207-278)||(18040356-18040426)
chr8 (211-310)||(18573889-18573988)
chr8 (232-286)||(10532633-10532687)
chr8 (209-282)||(24060815-24060888)
chr8 (232-310)||(17775848-17775926)
chr8 (88-117)||(22739948-22739977)
[»] scaffold0362 (1 HSPs)
scaffold0362 (207-304)||(7217-7314)
[»] scaffold1272 (1 HSPs)
scaffold1272 (207-310)||(1972-2075)
[»] scaffold0026 (1 HSPs)
scaffold0026 (212-286)||(151164-151238)
[»] scaffold0008 (2 HSPs)
scaffold0008 (208-310)||(253542-253644)
scaffold0008 (210-310)||(242902-243002)
[»] scaffold0192 (1 HSPs)
scaffold0192 (207-304)||(12555-12652)
[»] scaffold0084 (1 HSPs)
scaffold0084 (208-309)||(54473-54574)
[»] scaffold0034 (1 HSPs)
scaffold0034 (210-310)||(56229-56329)
[»] scaffold0280 (1 HSPs)
scaffold0280 (208-283)||(909-984)
[»] scaffold0150 (1 HSPs)
scaffold0150 (208-286)||(29926-30004)
[»] scaffold0042 (1 HSPs)
scaffold0042 (208-310)||(68902-69004)
[»] chr3 (4 HSPs)
chr3 (208-257)||(31530488-31530537)
chr3 (208-277)||(19790537-19790606)
chr3 (87-117)||(42369934-42369964)
chr3 (208-285)||(16852878-16852954)
[»] scaffold0083 (1 HSPs)
scaffold0083 (208-286)||(4065-4143)
[»] scaffold0483 (1 HSPs)
scaffold0483 (205-310)||(9359-9464)
[»] scaffold0013 (1 HSPs)
scaffold0013 (207-286)||(37094-37173)
[»] scaffold0170 (1 HSPs)
scaffold0170 (208-310)||(16185-16287)
[»] scaffold1121 (1 HSPs)
scaffold1121 (87-118)||(378-409)
[»] scaffold0002 (2 HSPs)
scaffold0002 (207-286)||(391713-391792)
scaffold0002 (208-278)||(381022-381092)
[»] scaffold0989 (1 HSPs)
scaffold0989 (260-310)||(1444-1494)
[»] scaffold0111 (1 HSPs)
scaffold0111 (208-310)||(2697-2799)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 88 - 310
Target Start/End: Original strand, 21592624 - 21592846
Alignment:
Q  88 acatcatcaaaacacaaacctataactaaaggaaacttcatatttgagcttagccacttaactctttcacaaaaaagatcccaagagaaaatcatgtctg 187  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21592624 acatcatcaaaacacaaacctataactaaaagaaacttcatatttgagcttagccacttaactctttcacaaaaaagatcccaagagaaaatcatgtctg 21592723  T
Q  188 ctgattctagtattggttcttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggct 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||||||||    
T  21592724 ctgattctagtattggttcttgttctggaccggccaaaagaatctttggcccattcacttaggcccaataccatccaaagtccaaacaccatgtttggct 21592823  T
Q  288 aaattacccgcgacacaaccctt 310  Q
    ||||||| ||||||||| |||||    
T  21592824 aaattactcgcgacacacccctt 21592846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 310
Target Start/End: Complemental strand, 18153460 - 18153357
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaac 306  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||||||   | |||||||||||||||| ||||||| ||||||| ||||||||| |    
T  18153460 ttgttctggaccggccaaaaggatctttggcccatttacttaggcccaatacactacaaagcccaaacaccatgtttggcaaaattactcgcgacacacc 18153361  T
Q  307 cctt 310  Q
    ||||    
T  18153360 cctt 18153357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 302
Target Start/End: Original strand, 40635506 - 40635598
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgaca 302  Q
    |||||||||| || |||||| ||||||| ||||||||||||| |||||||||||||||||  ||||||||||||||||| ||||||| |||||||    
T  40635506 tgttctggactggtcaaaaggatctttg-cccattcacttagacccaatatcatccaaag-tcaaacaccacgtttggcaaaattactcgcgaca 40635598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 310
Target Start/End: Original strand, 30770050 - 30770159
Alignment:
Q  201 tggttcttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcga 300  Q
    ||||| ||||||||||||||||||||| | |||||| ||||| ||||||||||||||  || ||||||||||||| |||||||| | || ||||  ||||    
T  30770050 tggttgttgttctggaccggccaaaaggacctttgaaccatttacttaggcccaatacaattcaaagcccaaacatcacgtttgacgaagttacttgcga 30770149  T
Q  301 cacaaccctt 310  Q
    |||| |||||    
T  30770150 cacacccctt 30770159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 21801716 - 21801791
Alignment:
Q  210 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttgg 285  Q
    |||||||||||||||||| ||||||| |||||| ||||||||||||||  ||| ||| ||||||||||||||||||    
T  21801716 ttctggaccggccaaaaggatctttggcccatttacttaggcccaatactatctaaaacccaaacaccacgtttgg 21801791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 20093866 - 20093790
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 284  Q
    ||||||| | |||||||||| |||||||||||||| ||||||| ||||||  |||||||| ||||||||||||||||    
T  20093866 tgttctgaatcggccaaaaggatctttgacccatttacttaggtccaatacaatccaaagtccaaacaccacgtttg 20093790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 304
Target Start/End: Original strand, 47295564 - 47295647
Alignment:
Q  221 ccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacaca 304  Q
    ||||||| |||||||||||||| ||||||| ||||||   | |||||||||||||||||||||||  ||||||| |||||||||    
T  47295564 ccaaaaggatctttgacccatttacttaggtccaatacactacaaagcccaaacaccacgtttggaaaaattactcgcgacaca 47295647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 38612888 - 38612810
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||| || |||||| | |||||||||||| |||||||| |||||  || ||||||||||||||||||||||||    
T  38612888 tgttctggactggtcaaaaggagctttgacccatttacttaggctcaatactattcaaagcccaaacaccacgtttggc 38612810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 9548828 - 9548905
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttgg 285  Q
    |||||||||||||||||||| || |||| |||||| || ||| |||||||  ||||||||||||||| ||||||||||    
T  9548828 tgttctggaccggccaaaaggatgtttggcccatttacgtagtcccaatacaatccaaagcccaaacgccacgtttgg 9548905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 29165178 - 29165101
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||||||||||| ||   ||||||||||| | ||||||||||||  | |||||||||||||||||||||||||    
T  29165178 tgttctggaccggccaaacgaca-tttgacccatttatttaggcccaatacaacccaaagcccaaacaccacgtttggc 29165101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 22705930 - 22705854
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 284  Q
    ||||||| |||||| |||||| |  ||||||||||| ||||||||||||||  |||||||| || |||||||||||||    
T  22705930 ttgttctagaccggtcaaaaggacatttgacccatttacttaggcccaatacaatccaaagtcc-aacaccacgtttg 22705854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 11952801 - 11952761
Alignment:
Q  88 acatcatcaaaacacaaacctataactaaaggaaacttcat 128  Q
    |||||||||||||| |||||||||| |||||||||||||||    
T  11952801 acatcatcaaaacaaaaacctataattaaaggaaacttcat 11952761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 2249860 - 2249962
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||||||||||  ||||||| | |||||||| ||| |||||  |||||||  || |||||| |||| |||||||||||| | |||||  |||||||| ||    
T  2249860 tgttctggaccaaccaaaaggagctttgacctatttacttattcccaatacaattcaaagctcaaataccacgtttggcaacattacttgcgacacaccc 2249959  T
Q  308 ctt 310  Q
    |||    
T  2249960 ctt 2249962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 10741 - 10843
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||    
T  10741 tgttctggatcggccaaaaggatctttggcccattcacttaggcccaataccatccaaagcccaaacaccacgtttggcaaaattactcgcgacacaccc 10840  T
Q  308 ctt 310  Q
    |||    
T  10841 ctt 10843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 17384 - 17282
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||| ||||||| || |||||| ||    
T  17384 tgttctggaccggccaaaagaatctttggcccattcacttaggcccagtaccatccaaatcccaaacaccacgtttggcaaaattactcgtgacacaccc 17285  T
Q  308 ctt 310  Q
    |||    
T  17284 ctt 17282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 15204 - 15106
Alignment:
Q  212 ctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 310  Q
    |||||||||||||||| ||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  15204 ctggaccggccaaaaggatctttggcccattcacttaggcccagtactatccaaagcccaaacaccacgtttggcaaaattactcgcgacacacccctt 15106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 29094885 - 29094987
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||||||||||| ||||||  ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||    
T  29094885 tgttctggaccgaccaaaaagatctttggcccattcacttaggcccaataccatccaaagcccaaacaccacgtttggcaaaattactcgcgacacaccc 29094984  T
Q  308 ctt 310  Q
    |||    
T  29094985 ctt 29094987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 27965056 - 27964962
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgac 301  Q
    ||||| |||||| |||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||    
T  27965056 ttgttttggaccagccaaaaggatctttggcccatttacttaggcccaatatcatccaaagcccaaacaccacgtttggtaaaattactcgcgac 27964962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 17756886 - 17756988
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    ||||| |||||||||||||| ||||||||| |||| ||||||||| ||||  ||| ||||||||||||||||||||||| ||||||| ||||||||| ||    
T  17756886 tgttcgggaccggccaaaaggatctttgacacatttacttaggcctaatacaatcgaaagcccaaacaccacgtttggcaaaattactcgcgacacaccc 17756985  T
Q  308 ctt 310  Q
    |||    
T  17756986 ctt 17756988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 18736331 - 18736253
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||||||||||||| || |||| |||||| ||||||||||||||  |||||||||||||||||||||||||||    
T  18736331 tgttctggaccggccaaaaggatttttggcccatttacttaggcccaataatatccaaagcccaaacaccacgtttggc 18736253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 23574725 - 23574648
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 284  Q
    ||||||||||||| ||||||| | ||||| |||||| ||||||||||||||  |||||||||||||||||||||||||    
T  23574725 ttgttctggaccgcccaaaaggacctttggcccatttacttaggcccaatacaatccaaagcccaaacaccacgtttg 23574648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 286
Target Start/End: Complemental strand, 18043607 - 18043531
Alignment:
Q  210 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||||||||||| | ||||| |||||| |||||||||||||| ||| ||||||||||||| ||||||||||    
T  18043607 ttctggaccggccaaaaggacctttggcccatttacttaggcccaataccattcaaagcccaaacatcacgtttggc 18043531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 15369491 - 15369570
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    ||||||||||||||||||||| ||||| | | |||| ||||| ||||||||| ||||||||| |||||||||||||||||    
T  15369491 ttgttctggaccggccaaaaggatcttaggcgcatttacttaagcccaatataatccaaagctcaaacaccacgtttggc 15369570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 29482922 - 29482820
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||||||||  ||||||||| ||||||| |||||| ||| |||||||| |  ||||||||||||||| ||||||||||| | |||||  |||||||| ||    
T  29482922 tgttctggaaaggccaaaaggatctttggcccatttactcaggcccaacacaatccaaagcccaaacgccacgtttggcaacattacttgcgacacaccc 29482823  T
Q  308 ctt 310  Q
    |||    
T  29482822 ctt 29482820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 15119590 - 15119665
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 284  Q
    |||||||||||||||||||| | ||| | |||||| ||||||||||||||  ||||| |||||||||||||||||||    
T  15119590 tgttctggaccggccaaaaggaccttgg-cccatttacttaggcccaatacaatccagagcccaaacaccacgtttg 15119665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 21508507 - 21508583
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 284  Q
    ||||||||| |||||||| | | ||||| |||||| ||||||||||||||  ||||||||| |||||||||||||||    
T  21508507 tgttctggatcggccaaagggacctttggcccatttacttaggcccaatacaatccaaagctcaaacaccacgtttg 21508583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 4409529 - 4409451
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagccc-aaacaccacgtttg 284  Q
    ||||||| || |||||||||| |  |||| |||||| |||||||||||||||||| |||||||| ||||||||||||||    
T  4409529 ttgttctcgatcggccaaaaggacatttggcccatttacttaggcccaatatcattcaaagcccaaaacaccacgtttg 4409451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 14910936 - 14910858
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||||||||||||| | ||||  |||||| |||||||| |||||  |||||||| ||||||||||| ||||||    
T  14910936 tgttctggaccggccaaaaggaccttttgcccatttacttaggcacaatagaatccaaagtccaaacaccacatttggc 14910858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 18729246 - 18729176
Alignment:
Q  214 ggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 284  Q
    |||| ||||||||| ||||||| |||||| ||||||||| ||||  ||||||| |||||||||||||||||    
T  18729246 ggacaggccaaaaggatctttggcccatttacttaggcctaatactatccaaaacccaaacaccacgtttg 18729176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 23524351 - 23524249
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||||||||||||||||| | | ||||| |||||| |||||||  |||||  | |||||||||||||||||||||| || || ||||  |||||||| ||    
T  23524351 tgttctggaccggccaaagggacctttggcccatttacttaggtacaatacaacccaaagcccaaacaccacgttttgcaaagttacttgcgacacaccc 23524252  T
Q  308 ctt 310  Q
    |||    
T  23524251 ctt 23524249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 19857705 - 19857781
Alignment:
Q  210 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||| ||||||| | ||||| | |||| |||||||| |||||  ||||||||| |||||||||||||||||    
T  19857705 ttctggaccgaccaaaaggacctttggcgcatttacttaggctcaatacaatccaaagctcaaacaccacgtttggc 19857781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 18258488 - 18258538
Alignment:
Q  233 ttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgttt 283  Q
    |||||||||| ||||||||||||||  ||||||||||||||||||| ||||    
T  18258488 ttgacccatttacttaggcccaatacaatccaaagcccaaacaccatgttt 18258538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 8306390 - 8306314
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 284  Q
    ||||||||||||| |||||| |  |||| |||||  ||||||||||||||  ||| |||||||||||| ||||||||    
T  8306390 tgttctggaccggtcaaaaggacatttggcccatatacttaggcccaatacgatctaaagcccaaacatcacgtttg 8306314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 15349496 - 15349574
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    ||||||||||||| |||||| ||||| | ||| || |||||||||| |||  ||||||||  ||||||||| |||||||    
T  15349496 tgttctggaccggtcaaaaggatcttaggcccgtttacttaggcccgatacaatccaaagatcaaacaccatgtttggc 15349574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 21815425 - 21815527
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||| ||||||| || |||||| ||    
T  21815425 tgttctggaccggccaaaagaatctttggcccattcacttaggcccagtaccatccaaatcccaaacaccacgtttggcaaaattactcgtgacacaccc 21815524  T
Q  308 ctt 310  Q
    |||    
T  21815525 ctt 21815527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 212 - 310
Target Start/End: Original strand, 21817605 - 21817703
Alignment:
Q  212 ctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 310  Q
    |||||||||||||||| ||||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  21817605 ctggaccggccaaaaggatctttggcccattcacttaggcccagtactatccaaagcccaaacaccacgtttggcaaaattactcgcgacacacccctt 21817703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 24973756 - 24973858
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||| |||||||||||||||  ||||||  ||||| |||||||||||||||||||||||||||||||||||||||| || |||||||  |||||||| ||    
T  24973756 tgttatggaccggccaaaaggttctttggtccatttacttaggcccaatatcatccaaagcccaaacaccacgttttgcaaaattacttgcgacacatcc 24973855  T
Q  308 ctt 310  Q
    |||    
T  24973856 ctt 24973858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 49472531 - 49472432
Alignment:
Q  210 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccct 309  Q
    ||||||||||| |||||| |||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||| | ||||||| ||||| ||| ||||    
T  49472531 ttctggaccgggcaaaaggatctttgacccatttacttaggcccaataccatccaaagtccaaacaccgcgtttgacaaaattactcgcgaaacacccct 49472432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 207 - 310
Target Start/End: Original strand, 19967287 - 19967390
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaac 306  Q
    |||||||||||||| |||||| | |||||| ||||| ||||||||||||||  |||||||| |||||||||||||||| | || ||||| |||||||| |    
T  19967287 ttgttctggaccggtcaaaaggacctttgatccatttacttaggcccaatacgatccaaagtccaaacaccacgtttgacaaagttacctgcgacacacc 19967386  T
Q  307 cctt 310  Q
    ||||    
T  19967387 cctt 19967390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 19441982 - 19442082
Alignment:
Q  210 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccct 309  Q
    |||||||||||||||||| | ||||| |||||| ||||||||||||||  ||||||| | ||||||||||||||||| || ||||  |||||||| ||||    
T  19441982 ttctggaccggccaaaaggacctttggcccatttacttaggcccaatacaatccaaaactcaaacaccacgtttggcaaagttacttgcgacacacccct 19442081  T
Q  310 t 310  Q
    |    
T  19442082 t 19442082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 310
Target Start/End: Complemental strand, 33029125 - 33029022
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaac 306  Q
    ||||||||||||||||||||  |  |||| | || | |||||||| |||||| ||||||||||||||||||||||||| ||| |||||  |||||||| |    
T  33029125 ttgttctggaccggccaaaatgagttttggctcaattacttaggcacaatataatccaaagcccaaacaccacgtttgactatattacttgcgacacacc 33029026  T
Q  307 cctt 310  Q
    ||||    
T  33029025 cctt 33029022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 9859303 - 9859224
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    ||||||||||||||||||||| |||||||||  ||| |||||| || ||||  |||||||  ||||||||||||||||||    
T  9859303 ttgttctggaccggccaaaaggatctttgacttattgacttagacctaatacaatccaaaatccaaacaccacgtttggc 9859224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 38622132 - 38622059
Alignment:
Q  210 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgttt 283  Q
    ||||||||||| |||||| |  ||||||| ||| ||||||||||||||  ||||||||| |||||| |||||||    
T  38622132 ttctggaccggacaaaaggacttttgacctatttacttaggcccaatacaatccaaagctcaaacatcacgttt 38622059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 8995308 - 8995384
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 284  Q
    |||| ||||||| ||||||| | ||||| |||||| |||||| |||||||  ||| |||||| ||||||||||||||    
T  8995308 tgttttggaccgaccaaaaggacctttggcccatttacttagacccaatactatctaaagcctaaacaccacgtttg 8995384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 23495678 - 23495576
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||| |||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| ||||||||| ||    
T  23495678 tgttttggaccgggcaaaaggatctttgacccatttacttaggctcaatatcatccaaagcccaaacaccacgttttgcaaaattactcgcgacacaccc 23495579  T
Q  308 ctt 310  Q
    |||    
T  23495578 ctt 23495576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 20899465 - 20899567
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    ||||||||||| |||||||| ||||||| |||||||||||| ||||| || |||||||||||||||||||||||||||  ||||||| ||||||||| ||    
T  20899465 tgttctggaccagccaaaaggatctttggcccattcacttaagcccagtaccatccaaagcccaaacaccacgtttggaaaaattactcgcgacacaccc 20899564  T
Q  308 ctt 310  Q
    |||    
T  20899565 ctt 20899567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 310
Target Start/End: Original strand, 36712518 - 36712621
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaac 306  Q
    ||||||| ||| ||| ||||| |||||||||||||| ||||||||||||||   ||||||||| |||||||||||||||| ||||||||||||||||| |    
T  36712518 ttgttctagactggctaaaaggatctttgacccatttacttaggcccaatacactccaaagcctaaacaccacgtttggcaaaattacccgcgacacacc 36712617  T
Q  307 cctt 310  Q
    ||||    
T  36712618 cctt 36712621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 13538060 - 13537958
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    ||||||||||||  ||||||||| ||||  ||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||| ||    
T  13538060 tgttctggaccgatcaaaagaatatttggtccatttacttaggcccaataccatccaaagcccaaacatcacgtttggcaaaattactcgcgacacaccc 13537961  T
Q  308 ctt 310  Q
    |||    
T  13537960 ctt 13537958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 310
Target Start/End: Original strand, 33622365 - 33622462
Alignment:
Q  213 tggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 310  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||||  |||||||||||||||| || ||||||| ||||||| ||||||||| |||||    
T  33622365 tggaccggccaaaaggatctttgacccatttacttaagcccaatacaatccaaagcccaaacatcatgtttggcaaaattactcgcgacacacccctt 33622462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 22510312 - 22510210
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||||||   |  ||||  |||||||||||||||   ||||||||||||||||| ||    
T  22510312 tgttctggaccggccaaaaggatctttggcccatttacttaggcccaatacactataaagttcaaacaccacgtttgataaaattacccgcgacacaccc 22510213  T
Q  308 ctt 310  Q
    |||    
T  22510212 ctt 22510210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 24095523 - 24095445
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||||||||||||| |  |||| |||||  ||||||||||||||  |||||||||||||| ||||||||||||    
T  24095523 tgttctggaccggccaaaaggagttttggcccatctacttaggcccaatacaatccaaagcccaaataccacgtttggc 24095445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 28067893 - 28067972
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatcc-aaagcccaaacaccacgtttggc 286  Q
    |||||||||||||||||||| |||||||||||| | ||||| ||||||||  |||| ||||| ||| |||||||||||||    
T  28067893 tgttctggaccggccaaaaggatctttgacccacttacttacgcccaatacaatccaaaagcacaagcaccacgtttggc 28067972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 5931521 - 5931435
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattac 294  Q
    |||| ||||| ||||||||| | ||||| |||||| ||||||||||||||  ||||| | |||||||| | |||||||| |||||||    
T  5931521 tgttatggactggccaaaagtacctttggcccatttacttaggcccaatacaatccacaacccaaacatcgcgtttggcaaaattac 5931435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 5590619 - 5590660
Alignment:
Q  261 tccaaagcccaaacaccacgtttggctaaattacccgcgaca 302  Q
    |||||||||||||||||||||||||| ||||||| |||||||    
T  5590619 tccaaagcccaaacaccacgtttggcaaaattactcgcgaca 5590660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 19329816 - 19329871
Alignment:
Q  231 ctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    ||||| |||||| ||||||||||||||  || ||||||||||| ||||||||||||    
T  19329816 ctttggcccatttacttaggcccaatacaattcaaagcccaaataccacgtttggc 19329871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 38608608 - 38608526
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaa 290  Q
    |||||||||||||||||||| | ||||||| |||| |||||||  |||||  || |||||  ||||| ||| |||||||||||    
T  38608608 tgttctggaccggccaaaaggacctttgactcatttacttaggttcaatacaattcaaagttcaaactccatgtttggctaaa 38608526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 42792772 - 42792735
Alignment:
Q  247 taggcccaatatcatccaaagcccaaacaccacgtttg 284  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  42792772 taggcccaatatcaaccaaagcccaaactccacgtttg 42792735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 41037524 - 41037592
Alignment:
Q  218 cggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||| | || ||||||||| |||||| | |||||  ||||||||||||||||| ||| |||||    
T  41037524 cggccaaaaggacctatgacccatttacttagactcaatacaatccaaagcccaaacactacggttggc 41037592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 13861644 - 13861542
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||||||||| |||  ||||||| ||||||||| ||    
T  13861644 tgttctggaccggccaaaaggatctttgactcatttacttaggcccaataccatccaaagcccaaacaccacgtctggtaaaattactcgcgacacaccc 13861545  T
Q  308 ctt 310  Q
    |||    
T  13861544 ctt 13861542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 16396135 - 16396237
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||||||  |||||||||| |||||||||||||||| || ||||  |||||||| ||    
T  16396135 tgttctggaccggccaaaaggatctttggcccatttacttaggcccaatacaatccaaagccaaaacaccacgtttggcaaagttacttgcgacacaccc 16396234  T
Q  308 ctt 310  Q
    |||    
T  16396235 ctt 16396237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 18284484 - 18284586
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||| ||||||||||||||| ||||||| |||||| | |||||||||||| ||||||||||||||||| |||||||||| ||||||| | ||||||| ||    
T  18284484 tgttatggaccggccaaaaggatctttggcccatttaattaggcccaataccatccaaagcccaaacatcacgtttggcaaaattactcacgacacaccc 18284583  T
Q  308 ctt 310  Q
    |||    
T  18284584 ctt 18284586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 304
Target Start/End: Complemental strand, 25240026 - 25239929
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacaca 304  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||||||   ||||||||| |||||||||||||| | ||||||| |||||||||    
T  25240026 ttgttctggaccggccaaaaggatctttggcccatttacttaggcccaatacactccaaagcctaaacaccacgtttgacaaaattactcgcgacaca 25239929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 8082375 - 8082300
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgttt 283  Q
    |||||||||||| ||||||| ||||| | |||||||||||||||||||||  ||||||||||||||||||||||||    
T  8082375 tgttctggaccgtccaaaaggatcttaggcccattcacttaggcccaatacaatccaaagcccaaacaccacgttt 8082300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 45313476 - 45313374
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||||||  || |||||||||| ||||| ||||||| | |||||  |||||||| ||    
T  45313476 tgttctggaccggccaaaaggaactttgacccatttacttaggcccaatacaattcaaagcccaagcaccatgtttggcaacattacttgcgacacaccc 45313377  T
Q  308 ctt 310  Q
    |||    
T  45313376 ctt 45313374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 12885612 - 12885532
Alignment:
Q  206 cttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||| ||||||||||||||| |  ||||||||||| ||||||||||||||  ||||||| |||||||||||||||||||    
T  12885612 cttgttttggaccggccaaaaggacttttgacccatttacttaggcccaatacaatccaaaacccaaacaccacgtttggc 12885532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 10985581 - 10985661
Alignment:
Q  206 cttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    ||||||||||||||| |||||| | ||||| |||||| ||||||||||||||  ||||||||  |||||||||||||||||    
T  10985581 cttgttctggaccgggcaaaaggacctttggcccatttacttaggcccaatacaatccaaaggtcaaacaccacgtttggc 10985661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 26780683 - 26780762
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    ||||||||||||||||||||| |  |||| |||||| || |||||||||||  || ||||||||||||||||||||||||    
T  26780683 ttgttctggaccggccaaaaggagttttggcccatttacataggcccaatactattcaaagcccaaacaccacgtttggc 26780762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 8168062 - 8168008
Alignment:
Q  232 tttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    ||||||||||| ||||||| ||||||  ||||||||||||||||||| |||||||    
T  8168062 tttgacccatttacttaggtccaatacaatccaaagcccaaacaccatgtttggc 8168008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 12217885 - 12217799
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattac 294  Q
    |||||||||| ||||||||| | ||||| |||||| |||||| || ||||  ||||| |||||||||||| ||||| || |||||||    
T  12217885 tgttctggactggccaaaaggacctttggcccatttacttagtcctaatacaatccacagcccaaacaccgcgtttagcaaaattac 12217799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 17282412 - 17282461
Alignment:
Q  261 tccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 310  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||| |||||    
T  17282412 tccaaagcccagacaccacgtttggcaaaattactcgcgacacacccctt 17282461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 118
Target Start/End: Complemental strand, 10491387 - 10491356
Alignment:
Q  87 gacatcatcaaaacacaaacctataactaaag 118  Q
    ||||||||||||||||||||||||||||||||    
T  10491387 gacatcatcaaaacacaaacctataactaaag 10491356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 294
Target Start/End: Complemental strand, 3268665 - 3268579
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattac 294  Q
    ||||| |||||||||||||| | ||||| |||||| |||||||| ||| |  ||||| ||||||||||||   |||||| |||||||    
T  3268665 tgttcgggaccggccaaaaggacctttggcccatttacttaggctcaaaacaatccacagcccaaacaccgattttggcaaaattac 3268579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 28892243 - 28892167
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 284  Q
    ||||||||||||| |||||| ||||| |  ||||| | ||||||||||||  ||| ||||  |||||||||||||||    
T  28892243 tgttctggaccggtcaaaaggatcttaggtccatttatttaggcccaatacaatctaaagttcaaacaccacgtttg 28892167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 27347499 - 27347397
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    ||||||||||||| |||||| ||||||| |||||| ||||| |||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||| ||    
T  27347499 tgttctggaccggtcaaaaggatctttggcccatttacttaagcccaataccatccaaagcccaaacatcacgtttggcaaaattactcgcgacacaccc 27347400  T
Q  308 ctt 310  Q
    |||    
T  27347399 ctt 27347397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 25133793 - 25133895
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||||||||| ||||||||  |||||||||||||| ||||||||||| ||  ||||||||||||||||||||||||||| || ||||  |||||||| ||    
T  25133793 tgttctggacgggccaaaaagatctttgacccatttacttaggcccattacaatccaaagcccaaacaccacgtttggcaaagttacttgcgacacaccc 25133892  T
Q  308 ctt 310  Q
    |||    
T  25133893 ctt 25133895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 3770591 - 3770513
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||||||||||||| | ||||| |||||| ||||||||||||||  || ||||||||||||||||||||||||    
T  3770591 tgttctggaccggccaaaaggacctttggcccatttacttaggcccaatacaattcaaagcccaaacaccacgtttggc 3770513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 23933010 - 23932908
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||||| ||||||||||||| ||||||| |||||| ||||||||| ||||  |||||||||||||||||||||| || | | |||||  |||||||| ||    
T  23933010 tgttctagaccggccaaaaggatctttggcccatttacttaggcctaatacaatccaaagcccaaacaccacgtctgacaacattacttgcgacacaccc 23932911  T
Q  308 ctt 310  Q
    |||    
T  23932910 ctt 23932908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 23755687 - 23755764
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttgg 285  Q
    |||||||||||||||||||| | ||||| |||||| || |||||||||||  ||||||||||||||||||| ||||||    
T  23755687 tgttctggaccggccaaaaggacctttggcccatttacctaggcccaatacaatccaaagcccaaacaccatgtttgg 23755764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 41266064 - 41266143
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||||||| |||||| || || |||||||| ||||||||||||||  |||||||  |||||||||| |||||||    
T  41266064 ttgttctggaccggtcaaaaggattttagacccatttacttaggcccaatacgatccaaaatccaaacaccatgtttggc 41266143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 19093051 - 19092949
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    ||||||||| ||| |||||| |  ||||| ||||| ||||||||||||||| || |||||||||||||||| ||||||  | |||||  |||||||| ||    
T  19093051 tgttctggatcggacaaaaggagatttgatccatttacttaggcccaatattattcaaagcccaaacaccatgtttggtaacattacttgcgacacatcc 19092952  T
Q  308 ctt 310  Q
    |||    
T  19092951 ctt 19092949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 3105536 - 3105459
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 284  Q
    ||||||||||| ||||||||| | ||||   ||||| |||||||||||| |  |||||||||||||||||||||||||    
T  3105536 ttgttctggactggccaaaaggacctttagtccatttacttaggcccaacacaatccaaagcccaaacaccacgtttg 3105459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 26154875 - 26154953
Alignment:
Q  232 tttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 310  Q
    ||||||||||| ||||||| ||||||| ||  ||||  ||||||||||||||||| || ||||  |||||||| |||||    
T  26154875 tttgacccatttacttaggtccaatataatttaaagttcaaacaccacgtttggcaaagttacttgcgacacatccctt 26154953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 302
Target Start/End: Complemental strand, 25821047 - 25820953
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgaca 302  Q
    |||||||||||||||||||| ||||||| || ||| | || |||| |||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  25821047 tgttctggaccggccaaaaggatctttggccaatttatttgggccgaataccatccaaagcccaaacaccacgtttggcaaaattactcgcgaca 25820953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 310
Target Start/End: Complemental strand, 11709709 - 11709609
Alignment:
Q  210 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccct 309  Q
    |||||||||||||||||| ||||||| |||||| ||||||||||||||  |||||||||||||| |||||||||| | | |||||  |||||||| ||||    
T  11709709 ttctggaccggccaaaaggatctttggcccatttacttaggcccaatacaatccaaagcccaaataccacgtttgacaatattacttgcgacacacccct 11709610  T
Q  310 t 310  Q
    |    
T  11709609 t 11709609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 22609355 - 22609438
Alignment:
Q  200 ttggttcttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 284  Q
    ||||||| |||||||||||| ||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||    
T  22609355 ttggttcctgttctggaccgaccaaaaggatctttgatccatttacttaggcccaata-catccaaagcccaaacaccatgtttg 22609438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 41280676 - 41280773
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacaca 304  Q
    |||||||||||||| |||||| | |||||||||||| |||||||||||| |  ||||||||||||||||||| ||||||| | |||||  ||||||||    
T  41280676 ttgttctggaccggacaaaaggacctttgacccatttacttaggcccaacacaatccaaagcccaaacaccatgtttggcaacattacttgcgacaca 41280773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 284
Target Start/End: Original strand, 32008884 - 32008959
Alignment:
Q  209 gttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttg 284  Q
    ||||||||||||||||||| | |||||||||||  ||||||||||||||  ||| |||||||||||||||||||||    
T  32008884 gttctggaccggccaaaaggacctttgacccatatacttaggcccaatacaatcgaaagcccaaacaccacgtttg 32008959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 7454521 - 7454599
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||||||||||||| ||||||| || ||| |||||||||||| |  ||||||||||||||| |||||||||||    
T  7454521 tgttctggaccggccaaaaggatctttggcctatttacttaggcccaacacaatccaaagcccaaactccacgtttggc 7454599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 33273391 - 33273469
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||| ||||||| ||||||| ||||||| |||||| ||||||||| ||||  |||||||||||||||||||||||||||    
T  33273391 tgttatggaccgaccaaaaggatctttggcccatttacttaggcctaatactatccaaagcccaaacaccacgtttggc 33273469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 310
Target Start/End: Complemental strand, 7999980 - 7999877
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaac 306  Q
    ||||||||||||||||||||| |  |||| |||||| ||||||||||||||  ||||| | ||| |||||| |||||||| |||||||  |||||||| |    
T  7999980 ttgttctggaccggccaaaaggacatttggcccatttacttaggcccaatacaatccacaacccgaacaccgcgtttggcaaaattacttgcgacacacc 7999881  T
Q  307 cctt 310  Q
    ||||    
T  7999880 cctt 7999877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 18040356 - 18040426
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacacca 278  Q
    ||||||||||||||||||||| | ||||| |||||| ||||||| ||||||| |||||||||||||||||||    
T  18040356 ttgttctggaccggccaaaaggacctttggcccatttacttagg-ccaatataatccaaagcccaaacacca 18040426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 310
Target Start/End: Original strand, 18573889 - 18573988
Alignment:
Q  211 tctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 310  Q
    ||||||||||||||||| || ||||  ||||| ||||||||| ||||  || |||||||||||||||||||||||| || ||||  |||||||| |||||    
T  18573889 tctggaccggccaaaaggatttttggtccatttacttaggcctaatacaatgcaaagcccaaacaccacgtttggcaaagttacttgcgacacatccctt 18573988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 10532633 - 10532687
Alignment:
Q  232 tttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    ||||||||||| |||||||||||||| ||| |||||| ||||| |||||||||||    
T  10532633 tttgacccatttacttaggcccaataccattcaaagctcaaacgccacgtttggc 10532687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 24060888 - 24060815
Alignment:
Q  209 gttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtt 282  Q
    |||||||||||| |||||| | ||||| |||||| ||||||||||||||  |||||||| | ||| ||||||||    
T  24060888 gttctggaccggtcaaaaggagctttggcccatttacttaggcccaatacaatccaaagtcgaaataccacgtt 24060815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 17775926 - 17775848
Alignment:
Q  232 tttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 310  Q
    |||| |||||| || |||| ||||||  |||||||||||||||| |||||||||| || ||||  |||||||| |||||    
T  17775926 tttggcccatttacctaggtccaatacaatccaaagcccaaacatcacgtttggcaaagttacttgcgacacacccctt 17775848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 22739977 - 22739948
Alignment:
Q  88 acatcatcaaaacacaaacctataactaaa 117  Q
    ||||||||||||||||||||||||||||||    
T  22739977 acatcatcaaaacacaaacctataactaaa 22739948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 7217 - 7314
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacaca 304  Q
    ||||| ||||||||| ||||| ||||||| |||||| | ||| | ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  7217 ttgttttggaccggctaaaaggatctttggcccatttatttatgtccaatatcatccaaagcccaaacaccaagtttggcaaaattactcgcgacaca 7314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1272 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1272
Description:

Target: scaffold1272; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 310
Target Start/End: Complemental strand, 2075 - 1972
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaac 306  Q
    ||||||||||||||||||||| |  |||| |||||| |||| || ||||||  || |||||||||||||||||||||||| |||||||  |||||||| |    
T  2075 ttgttctggaccggccaaaaggagttttggcccatttacttgggtccaatactattcaaagcccaaacaccacgtttggcaaaattacttgcgacacacc 1976  T
Q  307 cctt 310  Q
    ||||    
T  1975 cctt 1972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 151164 - 151238
Alignment:
Q  212 ctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||||||||| ||||||| |||||| ||||||||| ||||  ||||||||||||||||| |||||||||    
T  151164 ctggaccggccaaaaggatctttggcccatttacttaggcctaatacaatccaaagcccaaacactacgtttggc 151238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 253644 - 253542
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||| ||||| ||||||||||| ||||| ||||||  |||||||||||||  ||||||| ||||||||||||||||||| | |||||  |||||||| ||    
T  253644 tgttttggacaggccaaaagaacctttggcccattttcttaggcccaatacaatccaaatcccaaacaccacgtttggcaacattacgtgcgacacaccc 253545  T
Q  308 ctt 310  Q
    |||    
T  253544 ctt 253542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 310
Target Start/End: Complemental strand, 243002 - 242902
Alignment:
Q  210 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccct 309  Q
    ||||| |||||||||||| | ||||| |||||| ||||||||||||||  ||| ||||||||||||||| ||||||| | |||||  |||||||| ||||    
T  243002 ttctgtaccggccaaaaggacctttgtcccatttacttaggcccaatacaatctaaagcccaaacaccaagtttggcaacattacttgcgacacacccct 242903  T
Q  310 t 310  Q
    |    
T  242902 t 242902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 304
Target Start/End: Complemental strand, 12652 - 12555
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacaca 304  Q
    ||||||||||||||||||||| | ||||| |||||| ||||||||| ||||  || ||||||||||||||||||||| || | |||||  ||||||||    
T  12652 ttgttctggaccggccaaaaggagctttggcccatttacttaggcctaatacaattcaaagcccaaacaccacgttttgcaacattacttgcgacaca 12555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 54473 - 54574
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||||||||||||||||||| ||||||| |||||| |||||| |||||||   | |||||||||||  ||||||||||| ||||||| || |||||| ||    
T  54473 tgttctggaccggccaaaaggatctttggcccatttacttagacccaatacactacaaagcccaaaatccacgtttggcaaaattactcgagacacaccc 54572  T
Q  308 ct 309  Q
    ||    
T  54573 ct 54574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 56229 - 56329
Alignment:
Q  210 ttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccct 309  Q
    |||||||| | | ||||| | ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| || ||||  |||||||| ||||    
T  56229 ttctggactgacaaaaaggacctttggcccatttacttaggcccaatacaatccaaagcccaaacaccacgtttggcgaagttacttgcgacacacccct 56328  T
Q  310 t 310  Q
    |    
T  56329 t 56329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 909 - 984
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgttt 283  Q
    ||||||||||||| |||||| | ||||| |||||| ||||||| ||||||  ||||||||||||||||||||||||    
T  909 tgttctggaccggtcaaaaggacctttggcccatttacttaggtccaatacaatccaaagcccaaacaccacgttt 984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 29926 - 30004
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||||||||||||| | ||||| |||||| | |||||||||| |  |||||||||||||||| ||||||||||    
T  29926 tgttctggaccggccaaaaggacctttggcccatttaattaggcccaacacaatccaaagcccaaacagcacgtttggc 30004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 69004 - 68902
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    ||||||| |||||||||||| ||||||| |||||| ||||||||||||||  || ||||||||| || |||||||| || | |||||  |||||||| ||    
T  69004 tgttctgaaccggccaaaaggatctttggcccatttacttaggcccaatacaattcaaagcccagactccacgttttgcaacattacttgcgacacaccc 68905  T
Q  308 ctt 310  Q
    |||    
T  68904 ctt 68902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 31530488 - 31530537
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaata 257  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  31530488 tgttctggaccggccaaaagaatctttgacccatttacttagacccaata 31530537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 19790606 - 19790537
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacacc 277  Q
    |||| ||||| ||||||||| ||| ||| |||||| |||||||||||||| |||||||| ||||||||||    
T  19790606 tgttatggactggccaaaaggatcattggcccatttacttaggcccaataccatccaaaacccaaacacc 19790537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 117
Target Start/End: Original strand, 42369934 - 42369964
Alignment:
Q  87 gacatcatcaaaacacaaacctataactaaa 117  Q
    |||||||||||||||||||||||||||||||    
T  42369934 gacatcatcaaaacacaaacctataactaaa 42369964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 16852878 - 16852954
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttgg 285  Q
    ||||||||||||||||||||  | ||||  ||||| ||||||||||||||  ||||||||| ||||  ||||||||||    
T  16852878 tgttctggaccggccaaaagggtttttggaccatt-acttaggcccaatacaatccaaagctcaaattccacgtttgg 16852954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 4065 - 4143
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||||||||||||| || |||| | |||| ||||||| | ||||  |||||||| ||||||||||||||||||    
T  4065 tgttctggaccggccaaaaggatatttggctcatttacttaggtcaaatacaatccaaagtccaaacaccacgtttggc 4143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 310
Target Start/End: Complemental strand, 9464 - 9359
Alignment:
Q  205 tcttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacaca 304  Q
    ||||||| |||||||||| | || |  |||| |||||| |||| || ||||||  || |||||||||||||||||||||||| |||||||  ||||||||    
T  9464 tcttgttatggaccggcctagaggagttttggcccatttacttgggtccaatactattcaaagcccaaacaccacgtttggcaaaattacttgcgacaca 9365  T
Q  305 accctt 310  Q
     |||||    
T  9364 cccctt 9359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 37094 - 37173
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    |||||||||||||| |||||| | |||||||||||| |||||||| |||||  ||||||| |  ||| ||||||||||||    
T  37094 ttgttctggaccggtcaaaaggagctttgacccatttacttaggctcaatacaatccaaatctaaaataccacgtttggc 37173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 16185 - 16287
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||||||||| ||||||||| | |||||  ||||| ||||||||||||||  | ||||||||||||||| | ||||||  || ||||  |||||||| ||    
T  16185 tgttctggactggccaaaaggacctttggtccatttacttaggcccaatacaacccaaagcccaaacactatgtttggaaaagttacatgcgacacaccc 16284  T
Q  308 ctt 310  Q
    |||    
T  16285 ctt 16287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1121 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1121
Description:

Target: scaffold1121; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 118
Target Start/End: Complemental strand, 409 - 378
Alignment:
Q  87 gacatcatcaaaacacaaacctataactaaag 118  Q
    ||||||||||||||||||||||||||||||||    
T  409 gacatcatcaaaacacaaacctataactaaag 378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 391792 - 391713
Alignment:
Q  207 ttgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggc 286  Q
    ||||||||||||| ||||||| | || ||  ||||| ||||||| ||||||  ||||||| ||||||||||||| |||||    
T  391792 ttgttctggaccgaccaaaaggacctgtggtccatttacttaggtccaatacaatccaaaccccaaacaccacggttggc 391713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 278
Target Start/End: Complemental strand, 381092 - 381022
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacacca 278  Q
    |||| ||||||||||||||| |  | || |||||| ||||| ||||||||  |||||||||||||||||||    
T  381092 tgttatggaccggccaaaaggacatgtggcccatttacttacgcccaatacaatccaaagcccaaacacca 381022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 1444 - 1494
Alignment:
Q  260 atccaaagcccaaacaccacgtttggctaaattacccgcgacacaaccctt 310  Q
    ||||||||||||||||||||||||||| || ||||  |||||||| |||||    
T  1444 atccaaagcccaaacaccacgtttggcgaagttacttgcgacacatccctt 1494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 2697 - 2799
Alignment:
Q  208 tgttctggaccggccaaaagaatctttgacccattcacttaggcccaatatcatccaaagcccaaacaccacgtttggctaaattacccgcgacacaacc 307  Q
    |||| ||||||| ||||||| | ||||| |||||| || |||||| ||||  || ||||||||||||||||  |||||| | |||||  || ||||||||    
T  2697 tgttttggaccgaccaaaaggagctttggcccatttacataggcctaatacaattcaaagcccaaacaccatctttggcaacattacttgctacacaacc 2796  T
Q  308 ctt 310  Q
    |||    
T  2797 ctt 2799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5836 times since January 2019
Visitors: 4860