View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_8 (Length: 519)
Name: NF0755_low_8
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_8 |
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| [»] scaffold1583 (1 HSPs) |
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Alignment Details
Target: scaffold1583 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold1583
Description:
Target: scaffold1583; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 474
Target Start/End: Complemental strand, 1142 - 688
Alignment:
| Q |
20 |
gacatcatcagaaggttattttggagcagcatctctgtggtttgcttcatcttcagaattaggaattttgtgtgctgtagtatggacactttgagttttt |
119 |
Q |
| |
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||||||| |||||| || | ||||| |||| ||||||||||||| |||||||||||||| |||||||| ||| ||||||||| ||||||||||||||| |
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|
| T |
1142 |
gacatcaacagaagattctgttggaacagcttctctgtggtttgtttcatcttcagaatcaggaatttcatgtactgtagtatctacactttgagttttt |
1043 |
T |
|
| Q |
120 |
ccgattccaattccagccctaatcctatttgatcttcgaacaccaatcaattgagaagattttgtcttctttggtttcaattgagagaaagtcttgagat |
219 |
Q |
| |
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| ||||| |||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| | ||||||| |
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| T |
1042 |
ctcattcctattccagccctaattctgtttgatctacgaacaccaattgattgagaagattttgtcttctttggttttgattgagagaaatttttgagat |
943 |
T |
|
| Q |
220 |
gaggagcggtttgagtgatgactggtggagaagcttgaaacaagggtttagaaatcatgtctagaggcatgatgtttagtggtggttcatcttctgaagt |
319 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
942 |
gaggagcggtttgagtgatgattggtggagaagcttgaaacaagggtttactaatcatgtctagaggcatgatgtttagtggtggttcatcttctggagt |
843 |
T |
|
| Q |
320 |
gtttggttgttgttgagttagaagaggatacagagatgtctttaatggcggcggtgagagtggtggagattttggagatggtggtcttttgtttaggtca |
419 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||| | | |||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |
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| T |
842 |
gtttggttggtgttgagttagaagaggagacagagatgaatctgatggcggcggtgagagtggtggcgagtttggagatggtggtgttttgtttaggtct |
743 |
T |
|
| Q |
420 |
ggtggagtaggtggtggaggacgagaaggtgaccacggtgaaggtggtggtgatg |
474 |
Q |
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| T |
742 |
ggtggagaaggtggtggaggaggagaaggtgaccatggtgaaggcggtggcgatg |
688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 469
Target Start/End: Complemental strand, 12922110 - 12921650
Alignment:
| Q |
20 |
gacatcatcagaaggttattttggagcagcatctctgtggtttgcttcatcttcagaattaggaattttgtgtgctgtagtatggacactttgagttttt |
119 |
Q |
| |
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||||||| ||||||||| | ||||| |||| |||||||||||||||||||||||||||| |||||||| ||| ||||||| | ||||||||||||||| |
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| T |
12922110 |
gacatcaacagaaggttctgttggaacagcttctctgtggtttgcttcatcttcagaatcaggaatttcatgtactgtagtgtctacactttgagttttt |
12922011 |
T |
|
| Q |
120 |
ccgattccaattccagccctaatcctatttgatcttcgaacaccaatcaattgagaagattttgtcttctttggtttcaattgagagaaagtcttgagat |
219 |
Q |
| |
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| |||||| ||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| ||||||||| |||||||||| || ||||||| |
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| T |
12922010 |
ctgattcctattccagccctaatcctgtttgatctacgaacaccaatcgattgagaagattttgtcttatttggtttcgattgagagaaggttttgagat |
12921911 |
T |
|
| Q |
220 |
gaggagcggtttgagtgatgactgg-----------tggagaagcttgaaacaagggtttagaaatcatgtctagaggcatgatgtttagtggtggttca |
308 |
Q |
| |
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||||||||||||||||||||| | | | ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
12921910 |
gaggagcggtttgagtgatgattcggccaaattatttagagaagcttgaaacaagggtttattaatcatgtctagaggcatgatgtttaatggtggttca |
12921811 |
T |
|
| Q |
309 |
tcttctgaagtgtttggttgttgttgagttagaagaggatacagagatgtctttaatggcggcggtgagagtggtggagattttggagatggtggtcttt |
408 |
Q |
| |
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||||||| || |||||||||||||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||||| |||| | |||||||| ||| |
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| T |
12921810 |
tcttctggagagtttggttgttgttgagttagaagaggagacagagatgtctctgatggcggtggtgagagtggtggagagtttgaaaatggtggtgttt |
12921711 |
T |
|
| Q |
409 |
tgtttaggtcaggtggagtaggtggtggaggacgagaaggtgaccacggtgaaggtggtgg |
469 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
12921710 |
tgtttaggtcaggtggagaaggtggtggaggaggagaaggtgaccacggtgaaggcggtgg |
12921650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 20 - 474
Target Start/End: Original strand, 14275545 - 14275999
Alignment:
| Q |
20 |
gacatcatcagaaggttattttggagcagcatctctgtggtttgcttcatcttcagaattaggaattttgtgtgctgtagtatggacactttgagttttt |
119 |
Q |
| |
|
||||||| ||||||||| | ||||| || | ||||||||||| | |||||||||||||| | |||||| ||| ||||||||| |||| |||||||||| |
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| T |
14275545 |
gacatcaacagaaggttctgttggaacaacttctctgtggttggtttcatcttcagaatcatgaatttcatgtactgtagtatctacacattgagttttt |
14275644 |
T |
|
| Q |
120 |
ccgattccaattccagccctaatcctatttgatcttcgaacaccaatcaattgagaagattttgtcttctttggtttcaattgagagaaagtcttgagat |
219 |
Q |
| |
|
| | ||| ||| |||| ||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | ||||||| |
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|
| T |
14275645 |
ctcaatcctatttcagctctaattctgtttgatctacgaacaccaattgattgagaagattttgtcttctttggtttcgattgagagaaatttttgagat |
14275744 |
T |
|
| Q |
220 |
gaggagcggtttgagtgatgactggtggagaagcttgaaacaagggtttagaaatcatgtctagaggcatgatgtttagtggtggttcatcttctgaagt |
319 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14275745 |
gaggagcggtttgagtgatgattggtggagaagcttgaaacaagggtttactaatcatgtctagaggcatgatgtttagtggtggttcatcttctggagt |
14275844 |
T |
|
| Q |
320 |
gtttggttgttgttgagttagaagaggatacagagatgtctttaatggcggcggtgagagtggtggagattttggagatggtggtcttttgtttaggtca |
419 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||| | | ||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |
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| T |
14275845 |
gtttggttggtgttgagttagaagaggagacagagatgaatctgatggcggcggtgagagtggtggagagtttggagatggcggtgttttgtttaggtca |
14275944 |
T |
|
| Q |
420 |
ggtggagtaggtggtggaggacgagaaggtgaccacggtgaaggtggtggtgatg |
474 |
Q |
| |
|
||||||| ||||||||||||| |||| ||||||| |||||||| ||||| |||| |
|
|
| T |
14275945 |
ggtggagaaggtggtggaggaggagacagtgaccatggtgaaggcggtggcgatg |
14275999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 474
Target Start/End: Original strand, 14638266 - 14638721
Alignment:
| Q |
19 |
ggacatcatcagaaggttattttggagcagcatctctgtggtttgcttcatcttcagaattaggaattttgtgtgctgtagtatggacactttgagtttt |
118 |
Q |
| |
|
|||||||| ||||||||| | ||||| |||| ||||||||| | | |||||||||||||| |||||||| ||| ||||||||| |||||||||||||| |
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| T |
14638266 |
ggacatcaacagaaggttctgttggaacagcttctctgtgggtagtttcatcttcagaatcaggaatttcatgtactgtagtatctacactttgagtttt |
14638365 |
T |
|
| Q |
119 |
tccgattccaattccagccctaatcctatttgatcttcgaacaccaatcaattgagaagattttgtcttctttggtttcaattgagagaaagtcttgaga |
218 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||||| |||||| ||||||| | || || ||| |
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|
| T |
14638366 |
ccttattcctattccagccctaatcctgtttgatctacgaataccaatcgattgagaagattttgtcttcttgggtttcgattgagaaagagcttttaga |
14638465 |
T |
|
| Q |
219 |
tgaggagcggtttgagtgatgactggtggagaagcttgaaacaagggtttagaaatcatgtctagaggcatgatgtttagtggtggttcatcttctgaag |
318 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
14638466 |
tgaggagcggtttgagtgattattgatggagaagcttgaaacaagggtttactaatcatgtctagaggcatgatgtttagtggtggttcatcttctggag |
14638565 |
T |
|
| Q |
319 |
tgtttggttgttgttgagttagaagaggatacagagatgtctttaatggcggcggtgagagtggtggagattttggagatggtggtcttttgtttaggtc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| | | |||| ||||||||||||||||| || ||||||||||||||| ||||||| ||||| |
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|
| T |
14638566 |
tgtttggttgttgttgagttagaagaggagacagagatgaatctgatggtggcggtgagagtggtggcgagtttggagatggtggtgttttgttcaggtc |
14638665 |
T |
|
| Q |
419 |
aggtggagtaggtggtggaggacgagaaggtgaccacggtgaaggtggtggtgatg |
474 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||| |||||||||||||| |||| |
|
|
| T |
14638666 |
tggtggagaaggtggtggaggaggagaatgtgaccgtggtgaaggtggtggcgatg |
14638721 |
T |
|
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