View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_87 (Length: 316)
Name: NF0755_low_87
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_87 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 37213909 - 37214207
Alignment:
| Q |
18 |
ctttgtcgatgaaaggttcctatctctagatacctctgtaagataactgtccacaagccttgccactcttgccttggcattcaggttacttcccacatgc |
117 |
Q |
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| T |
37213909 |
ctttgtcgatgaaaggtttctatctctagatacctctgtaagataactgtccacaagccttgccactcttgccttggcattcaggttacttcccacattc |
37214008 |
T |
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| Q |
118 |
ttgtgatcagaaagggattgtctacttggactataaccttcagtttgttcttgaacaagaaaatgctccaacaacctctgaacaagatccacatcataca |
217 |
Q |
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| T |
37214009 |
ttgtgatcagaaagggattgtctacttggactataaccttcagtttgttcttgaacaagaaaatgctccaacaacctctgaacaagatccacatcataca |
37214108 |
T |
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| Q |
218 |
tagtttcacttttctcatagcaaggaattagaagatcagaaagtgtagcttgctcaaactgcattccaacccttttctctaaatcagtaatcaatgcat |
316 |
Q |
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| T |
37214109 |
tagtttcacttttctcatagcaaggaattagaagatcagaaagtgtagcttgctcaaactgcattccaacccttttctctaaatcagtaatcaatgcat |
37214207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 1885251 - 1884948
Alignment:
| Q |
18 |
ctttgtcgatgaaaggttcctatctctagatacctctgtaagataactgtccacaagccttgccactcttgccttggcattcaggttacttcccacatgc |
117 |
Q |
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||||||| |||||||||| |||||||| || |||||||||||||||||||| ||||| ||||| |||||||| || ||||| ||||||| ||||| | |
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| T |
1885251 |
ctttgtcaatgaaaggtttctatctcttgaaacctctgtaagataactgtcaacaagtcttgctactcttgctttagcattaaggttacatcccaatccc |
1885152 |
T |
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| Q |
118 |
ttgtgat---cagaaagggattgtctacttggactataaccttcagtttgttcttgaacaagaaaatgctccaacaacctctgaacaagatccacatcat |
214 |
Q |
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| || | |||||| || ||||| | |||||| || |||||| |||||| |||||||||||||| | || |||| ||||||||| ||||||| |
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| T |
1885151 |
atatgtttctcagaaaatgactgtcttttcggactagaattttcagtcacttcttgtacaagaaaatgctcaagcagcctcataacaagatcaacatcat |
1885052 |
T |
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| Q |
215 |
acatagtt---tcacttttctcatagcaaggaattagaagatcagaaagtgtagcttgctcaaactgcattccaacccttttctctaaatcagtaatcaa |
311 |
Q |
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|||| || || | ||| | ||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |
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| T |
1885051 |
acatcattgtctctcctttattataacaaggaattaatagatcagcaagtgtagcttgctcaaattgcattccaacccttttctctaattcagtaaccaa |
1884952 |
T |
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| Q |
312 |
tgca |
315 |
Q |
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|||| |
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| T |
1884951 |
tgca |
1884948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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