View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_low_93 (Length: 301)
Name: NF0755_low_93
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_low_93 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 19615244 - 19615534
Alignment:
| Q |
1 |
tcatcatttgacacaatttaaaatgttcgaggagtgtaccagctactaacggcagcagaacctcccaatcgtgatgaatatcagaatataatttggaata |
100 |
Q |
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| T |
19615244 |
tcatcatttgacacaatttaaaatgttcgaggagtgtaccagctactaacgggagcagaacctcccaatcgtgatgaatatcacgatataatttggaata |
19615343 |
T |
|
| Q |
101 |
aaacaatacctttaaaagtaacaatttttgcgtggtttctatttcgaaatcgtattgcaatgaaagatgatatggtgcagcatgggatcatccaatcgaa |
200 |
Q |
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| T |
19615344 |
aaacaatacctttaaaagtaacaatttttgcgtggtttctatttcggaatcgtattgcaatgaaagataatatgatgcagcatgggatcatccaatcgaa |
19615443 |
T |
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| Q |
201 |
tcaaaatgtgtgtagttacgggtgtggtcaagctaaaccaatcgatcattcgttctttgaatatagtcattttggcagcatttggtctctg |
291 |
Q |
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| T |
19615444 |
tcaaaatgtgtgtagttacgggtgtggtcaagctaaaccaatcaatcattcgttctttgaatatagtcattttggcagcatttggtctctg |
19615534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 19621003 - 19621278
Alignment:
| Q |
17 |
tttaaaatgttcgaggagtgtaccagctactaacggcagcagaacctcccaa-tcgtgatgaatatcagaatataatttggaataaaacaatacctttaa |
115 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19621003 |
tttataatgttttaggagtgtaccagctactaacggcagcagaacctcccaaatcgtgatgaatatcgtcatataatttggaataaaacaatacctttaa |
19621102 |
T |
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| Q |
116 |
aagtaacaatttttgcgtggtttctatttcgaaatcgtattgcaatgaaagatgatatggtgcagcatgggatcatccaatcgaatcaaaatgtgtgtag |
215 |
Q |
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| T |
19621103 |
aagtaacaatttttgtgtggtggctatttcggaatcgtattgcaacaaaagacaatttggtgcagcatgggaacatccaatcgaatcaaaatgtgtgtag |
19621202 |
T |
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| Q |
216 |
ttacgggtgtggtcaagctaaaccaatcgatcattcgttctttgaatatagtcattttggcagcatttggtctctg |
291 |
Q |
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|||| ||||| |||||||| ||||||||||||||| ||||||||||| || ||||||||||||||||||| ||||| |
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| T |
19621203 |
ttacaggtgttgtcaagctgaaccaatcgatcatttgttctttgaatgtaatcattttggcagcatttggcctctg |
19621278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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