View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0756_high_3 (Length: 281)
Name: NF0756_high_3
Description: NF0756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0756_high_3 |
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| [»] scaffold0200 (1 HSPs) |
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| [»] scaffold0299 (1 HSPs) |
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Alignment Details
Target: scaffold0200 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 11190 - 11161
Alignment:
| Q |
201 |
ttgtgtggtctaagttattatgtgatgatg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11190 |
ttgtgtggtctaagttattatgtgatgatg |
11161 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 1859711 - 1859740
Alignment:
| Q |
201 |
ttgtgtggtctaagttattatgtgatgatg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1859711 |
ttgtgtggtctaagttattatgtgatgatg |
1859740 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 15464333 - 15464304
Alignment:
| Q |
201 |
ttgtgtggtctaagttattatgtgatgatg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
15464333 |
ttgtgtggtctaagttattatgtgatgatg |
15464304 |
T |
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Target: scaffold0299 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 6249 - 6221
Alignment:
| Q |
201 |
ttgtgtggtctaagttattatgtgatgat |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
6249 |
ttgtgtggtctaagttattatgtgatgat |
6221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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