View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0756_high_6 (Length: 221)
Name: NF0756_high_6
Description: NF0756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0756_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 2854101 - 2853968
Alignment:
| Q |
1 |
accacaaacattgataacggttgaacattagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgat |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854101 |
accacaaacattgataacggttgaacactagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgat |
2854002 |
T |
|
| Q |
101 |
attggagtctaatacacacaagtgatgatgatgt |
134 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2854001 |
attggagtctaatacacacaagtgatgatgatgt |
2853968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 2906129 - 2905996
Alignment:
| Q |
1 |
accacaaacattgataacggttgaacattagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgat |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906129 |
accacaaacattgataacggttgaacactagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgat |
2906030 |
T |
|
| Q |
101 |
attggagtctaatacacacaagtgatgatgatgt |
134 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2906029 |
attggagtctaatacacacaagtgatgatgatgt |
2905996 |
T |
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