View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0756_low_11 (Length: 309)
Name: NF0756_low_11
Description: NF0756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0756_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 29 - 303
Target Start/End: Original strand, 1696126 - 1696396
Alignment:
| Q |
29 |
attaccctggtgcgaagaacagtccaaacgagataacattccctgcattcaaatttcagnnnnnnnnntcaatcagaaacatgtatgattaatcgattaa |
128 |
Q |
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| T |
1696126 |
attacgctggtgagaagaacagtccaaacgagataacattccctgcattcaaatttca----caaaaatcaatcagaaacatgtatgattaatcgattaa |
1696221 |
T |
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| Q |
129 |
cataaaaagctaaaatcaatcgtaactgaactaaagacttctaaaatcgattatcagaaaaagttaaaattatactttatgcatgcgtgcatgataatcg |
228 |
Q |
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| T |
1696222 |
cataaaaagctaaaatcaatcgtaactgaactaaaaacttccaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcg |
1696321 |
T |
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| Q |
229 |
attatgagaaaaagttaaaataaactgaaatgatactgaaaagagaagaagaagtgattaacaaacctatgatac |
303 |
Q |
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| T |
1696322 |
attatgataaaaagttaaaataaactgaaatgatactgaaaagagaagaagaagtgattaacaaacctatgatac |
1696396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 30 - 303
Target Start/End: Original strand, 1685578 - 1685839
Alignment:
| Q |
30 |
ttaccctggtgcgaagaacagtccaaacgagataacattccctgcattcaaa-tttcagnnnnnnnnntcaatcagaaacatgtatgattaatcgattaa |
128 |
Q |
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| T |
1685578 |
ttaccctggtgcgaagaacagtccaaacgagataacattcccttcattcaaaatttcagaaaaaaa--tcaatcagaaacatgtatgattaatcgattaa |
1685675 |
T |
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| Q |
129 |
cataaaaagctaaaatcaatcgtaactgaactaaagacttctaaaatcgattatcagaaaaagttaaaattatactttatgcatgcgtgcatgataatcg |
228 |
Q |
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| T |
1685676 |
cacaaaaagctaaaatcaatcgtaactgaactaaaaacttcaaaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcg |
1685775 |
T |
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| Q |
229 |
attatgagaaaaagttaaaataaactgaaatgatactgaaaagagaagaagaagtgattaacaaacctatgatac |
303 |
Q |
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| T |
1685776 |
attatgataaaaagttaaaataa-----------actgaaaagagaagaagaagtgattaacaaacctatgatac |
1685839 |
T |
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