View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0756_low_14 (Length: 280)

Name: NF0756_low_14
Description: NF0756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0756_low_14
NF0756_low_14
[»] chr3 (8 HSPs)
chr3 (60-237)||(26755857-26756034)
chr3 (47-164)||(52969920-52970037)
chr3 (47-169)||(48095746-48095868)
chr3 (90-169)||(6159990-6160069)
chr3 (178-224)||(54585944-54585990)
chr3 (72-136)||(25478186-25478250)
chr3 (179-215)||(8735756-8735792)
chr3 (179-215)||(9087997-9088033)
[»] chr7 (5 HSPs)
chr7 (60-169)||(15893053-15893162)
chr7 (61-169)||(19219680-19219788)
chr7 (72-136)||(44711996-44712060)
chr7 (90-169)||(41254951-41255030)
chr7 (72-132)||(19337373-19337433)
[»] chr8 (4 HSPs)
chr8 (60-169)||(757013-757122)
chr8 (47-169)||(23255806-23255928)
chr8 (71-136)||(16667248-16667313)
chr8 (75-136)||(26674697-26674758)
[»] chr5 (7 HSPs)
chr5 (47-169)||(16491664-16491786)
chr5 (47-169)||(34828103-34828225)
chr5 (47-164)||(20234091-20234208)
chr5 (47-169)||(23350923-23351045)
chr5 (47-169)||(25762787-25762908)
chr5 (73-136)||(31043377-31043440)
chr5 (73-136)||(31058603-31058666)
[»] chr1 (5 HSPs)
chr1 (71-169)||(12865284-12865382)
chr1 (47-169)||(45908317-45908439)
chr1 (47-169)||(44710566-44710688)
chr1 (47-160)||(33804392-33804505)
chr1 (47-169)||(50517436-50517559)
[»] chr2 (3 HSPs)
chr2 (60-164)||(30214552-30214656)
chr2 (47-135)||(29810847-29810935)
chr2 (75-136)||(10926795-10926856)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 26755857 - 26756034
Alignment:
Q  60 ggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggcttcttcggatttt 159  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26755857 ggtacatctgtaaccttttcaataaagtattgcatccaaattgggatttggtctttgtgtggtatgtggactttaacgggtgttggcttcttcggatttt 26755956  T
Q  160 ttggaattggtccaaaacgcagggcgcgcgagaagatgacagggtgggaaaagtaaatctcaaattctaatctatctc 237  Q
    ||||||||||||||||||| |||||||||||||||  | | | ||||||||| |||||||||||||||||||||||||    
T  26755957 ttggaattggtccaaaacgaagggcgcgcgagaaggcggctgagtgggaaaattaaatctcaaattctaatctatctc 26756034  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 52969920 - 52970037
Alignment:
Q  47 atggacatcatcaggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggc 146  Q
    |||| ||||| |||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||    
T  52969920 atggccatcaccaggtacatctgtaaccttttcaataaatttatgcatccaaattgggatttggtctttgtgtggtatgttgactttaaccggtgttagc 52970019  T
Q  147 ttcttcggattttttgga 164  Q
    || ||||| |||||||||    
T  52970020 ttgttcgggttttttgga 52970037  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 48095868 - 48095746
Alignment:
Q  47 atggacatcatcaggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggc 146  Q
    |||| ||||||| |||||||||||||||||||||||||| |  |||||||||||| ||||||||||||||| || ||| | ||||||||| |||||||||    
T  48095868 atggccatcatcgggtacatctgtaaccttttcaataaacttatgcatccaaattaggatttggtctttgtgtgatatattgactttaaccggtgttggc 48095769  T
Q  147 ttcttcggattttttggaattgg 169  Q
    || || || ||||||||| ||||    
T  48095768 ttgttagggttttttggagttgg 48095746  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 6159990 - 6160069
Alignment:
Q  90 tgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggcttcttcggattttttggaattgg 169  Q
    |||||| ||||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  6159990 tgcatcaaaattgggatttgatctttgtgtggtatgtcgactttaacgggtgttggcatcttcggattttttggagttgg 6160069  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 54585990 - 54585944
Alignment:
Q  178 gcagggcgcgcgagaagatgacagggtgggaaaagtaaatctcaaat 224  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||    
T  54585990 gcagggcgcgcgagaaggagacagggtggaaaaagtaaatctcaaat 54585944  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 25478186 - 25478250
Alignment:
Q  72 accttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaac 136  Q
    |||||||||||||| || ||||| |||   |||||||| ||||||| ||||||||||||||||||    
T  25478186 accttttcaataaattcatgcatgcaatgcgggatttgttctttgtgtggtatgtggactttaac 25478250  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 8735756 - 8735792
Alignment:
Q  179 cagggcgcgcgagaagatgacagggtgggaaaagtaa 215  Q
    |||||||||||||||||  ||||||||||||||||||    
T  8735756 cagggcgcgcgagaagacaacagggtgggaaaagtaa 8735792  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 9087997 - 9088033
Alignment:
Q  179 cagggcgcgcgagaagatgacagggtgggaaaagtaa 215  Q
    |||||||||||||||||  ||||||||||||||||||    
T  9087997 cagggcgcgcgagaagacaacagggtgggaaaagtaa 9088033  T

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Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 15893162 - 15893053
Alignment:
Q  60 ggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggcttcttcggatttt 159  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||    
T  15893162 ggtacatctgtaaccttttgaataaagtcatgcattcaaattgggatttggtctttgtgtggtatgtggactttaacaggtgtttgcttcttcggatttt 15893063  T
Q  160 ttggaattgg 169  Q
    ||||||||||    
T  15893062 ttggaattgg 15893053  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 19219788 - 19219680
Alignment:
Q  61 gtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggcttcttcggattttt 160  Q
    |||||||| |||||||||||||||| |  |||||||||||||   |||||||||||| |||||||| ||||||||  ||||||||||| ||||| |||||    
T  19219788 gtacatctataaccttttcaataaatttatgcatccaaattgaactttggtctttgtgtggtatgttgactttaaacggtgttggcttgttcgggttttt 19219689  T
Q  161 tggaattgg 169  Q
    |||| ||||    
T  19219688 tggagttgg 19219680  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 44712060 - 44711996
Alignment:
Q  72 accttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaac 136  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |||||||||    
T  44712060 accttttcaataaagtcatgcatccaaattggaatttggtctttgtgtggtatgtcgactttaac 44711996  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 41254951 - 41255030
Alignment:
Q  90 tgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggcttcttcggattttttggaattgg 169  Q
    |||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||||| |||   ||||||||| ||||    
T  41254951 tgcatccaaattgggatttggtctttgtgtggtatattgactttaaccggtgttggcttgttcatgttttttggagttgg 41255030  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 19337373 - 19337433
Alignment:
Q  72 accttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactt 132  Q
    ||||||||| |||| || |||||||||  || ||||| |||||||| ||||||||||||||    
T  19337373 accttttcattaaattcatgcatccaatgtgagatttagtctttgtgtggtatgtggactt 19337433  T

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Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 757122 - 757013
Alignment:
Q  60 ggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggcttcttcggatttt 159  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||||||    
T  757122 ggtagatctgtaaccttttcaataaagtcatgcatccaaattgggatttggtctttgtgtggtatgtcgactttaacgggtgttggcatctttggatttt 757023  T
Q  160 ttggaattgg 169  Q
    ||||| ||||    
T  757022 ttggagttgg 757013  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 23255928 - 23255806
Alignment:
Q  47 atggacatcatcaggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggc 146  Q
    |||| ||||| | |||||||||||||||||||||||||| |   |||||||||| ||||||||||||||||  ||||||| ||||||||| |||||||||    
T  23255928 atggccatcaccgggtacatctgtaaccttttcaataaatttaggcatccaaatcgggatttggtctttgtgcggtatgttgactttaaccggtgttggc 23255829  T
Q  147 ttcttcggattttttggaattgg 169  Q
    || ||||||||||||||| ||||    
T  23255828 ttgttcggattttttggagttgg 23255806  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 16667313 - 16667248
Alignment:
Q  71 aaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaac 136  Q
    ||||||||||||||| |  |||||||||  ||||||||||||||||| |||||| |||||||||||    
T  16667313 aaccttttcaataaattgatgcatccaatgtgggatttggtctttgtgtggtatatggactttaac 16667248  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 26674697 - 26674758
Alignment:
Q  75 ttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaac 136  Q
    ||||||||| | || |||||||||  | ||||||||||||||| ||||||||||||| ||||    
T  26674697 ttttcaatagattcatgcatccaatgtaggatttggtctttgtgtggtatgtggactataac 26674758  T

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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 47 - 169
Target Start/End: Original strand, 16491664 - 16491786
Alignment:
Q  47 atggacatcatcaggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggc 146  Q
    |||| ||||| | ||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | ||||||||||||||||| |    
T  16491664 atggccatcaccgggtacatccctaaccttttcaataaagtcatgcatccaaattgggatttggtctttgtgtggtatatagactttaacgggtgttgac 16491763  T
Q  147 ttcttcggattttttggaattgg 169  Q
    |||||||||||||| ||||||||    
T  16491764 ttcttcggatttttgggaattgg 16491786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 47 - 169
Target Start/End: Original strand, 34828103 - 34828225
Alignment:
Q  47 atggacatcatcaggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggc 146  Q
    |||| ||||| |||||||||||||||||||||||||||| |  |||||| ||||||||||||||||||||| |||||||| || |||||  |||||||||    
T  34828103 atggccatcaccaggtacatctgtaaccttttcaataaatttatgcatcaaaattgggatttggtctttgtgtggtatgttgaatttaatcggtgttggc 34828202  T
Q  147 ttcttcggattttttggaattgg 169  Q
    || ||||| ||||||||| ||||    
T  34828203 ttgttcgggttttttggagttgg 34828225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 20234091 - 20234208
Alignment:
Q  47 atggacatcatcaggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggc 146  Q
    |||| ||||||| ||||||||||||||| |||||||||| |  |  ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||    
T  20234091 atggccatcatcgggtacatctgtaaccctttcaataaatttatatatccaaattgggatttggtctttgtgtggtatgttgactttaaccggtgttggc 20234190  T
Q  147 ttcttcggattttttgga 164  Q
    || ||||| |||||||||    
T  20234191 ttgttcgggttttttgga 20234208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 169
Target Start/End: Original strand, 23350923 - 23351045
Alignment:
Q  47 atggacatcatcaggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggc 146  Q
    |||| ||||| |||||||||||||||||||||||||||| |  ||||||||||||| |||||||||||| | || ||||| ||||||||| | |||||||    
T  23350923 atggccatcaccaggtacatctgtaaccttttcaataaatttatgcatccaaattgagatttggtctttatgtgatatgttgactttaaccgatgttggc 23351022  T
Q  147 ttcttcggattttttggaattgg 169  Q
    || ||||| ||||||||| ||||    
T  23351023 ttgttcgggttttttggagttgg 23351045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 25762908 - 25762787
Alignment:
Q  47 atggacatcatcaggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggc 146  Q
    |||| ||||| | ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| | |||||| |||||| || |||||||||    
T  25762908 atggccatcaccgggtacatctgtaaccttttcaataaagttatgcatccaaattgggatttggtctttgtgttgtatgttgacttt-accggtgttggc 25762810  T
Q  147 ttcttcggattttttggaattgg 169  Q
    || ||||  ||||||||| ||||    
T  25762809 ttgttcgagttttttggagttgg 25762787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 31043377 - 31043440
Alignment:
Q  73 ccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaac 136  Q
    ||||||||||||| || |||||||||  ||||||||| ||||||| ||||||||||||||||||    
T  31043377 ccttttcaataaattcatgcatccaatgtgggatttgttctttgtgtggtatgtggactttaac 31043440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 31058603 - 31058666
Alignment:
Q  73 ccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaac 136  Q
    ||||||||||||| || |||||||||  ||||||||||||||||| |||||||| |||||||||    
T  31058603 ccttttcaataaattcatgcatccaatatgggatttggtctttgtgtggtatgttgactttaac 31058666  T

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Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 12865284 - 12865382
Alignment:
Q  71 aaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggcttcttcggattttttggaattgg 169  Q
    |||||||  |||||| || |||||||||||||||||||||||||||| ||||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  12865284 aacctttctaataaattcatgcatccaaattgggatttggtctttgtgtggtatgtggactttaaccagtgctggcttcttcggattttttggaattgg 12865382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 47 - 169
Target Start/End: Original strand, 45908317 - 45908439
Alignment:
Q  47 atggacatcatcaggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggc 146  Q
    |||| ||||| | |||||||||||||||||||||||||| |  |||||||||||||||||||||||||||| |||||| | ||||||||| |||||||||    
T  45908317 atggccatcaccgggtacatctgtaaccttttcaataaatttatgcatccaaattgggatttggtctttgtgtggtatattgactttaaccggtgttggc 45908416  T
Q  147 ttcttcggattttttggaattgg 169  Q
    || | ||| ||||||||| ||||    
T  45908417 ttgtccgggttttttggagttgg 45908439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 169
Target Start/End: Original strand, 44710566 - 44710688
Alignment:
Q  47 atggacatcatcaggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggc 146  Q
    |||| ||||| | |||||||||||||||||||||||||| |  |||||||||||| ||||||||||||||| |||||| |  |||||||| |||||||||    
T  44710566 atggccatcaccgggtacatctgtaaccttttcaataaatttatgcatccaaattaggatttggtctttgtgtggtatattaactttaaccggtgttggc 44710665  T
Q  147 ttcttcggattttttggaattgg 169  Q
    || ||||| ||||||||| ||||    
T  44710666 ttgttcgggttttttggagttgg 44710688  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 33804505 - 33804392
Alignment:
Q  47 atggacatcatcaggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggc 146  Q
    |||| ||||| | ||||||| |||||||||||||||||| |  |||||||||||||||||||||| ||||| ||||||||  |||||||| |||||||||    
T  33804505 atggccatcaccgggtacatttgtaaccttttcaataaatttatgcatccaaattgggatttggtttttgtgtggtatgttaactttaaccggtgttggc 33804406  T
Q  147 ttcttcggattttt 160  Q
    || ||||| |||||    
T  33804405 ttgttcgggttttt 33804392  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 50517559 - 50517436
Alignment:
Q  47 atggacatcatcaggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaa-cgggtgttgg 145  Q
    |||| ||||| | |||||||||||| ||||||||||||| |  ||||| |||||||||||||||||||||| | |||| |  ||||||| ||||||||||    
T  50517559 atggccatcaccgggtacatctgtacccttttcaataaatttatgcattcaaattgggatttggtctttgtgtcgtatatttactttaatcgggtgttgg 50517460  T
Q  146 cttcttcggattttttggaattgg 169  Q
    ||| ||||| ||||||||| ||||    
T  50517459 cttgttcgggttttttggagttgg 50517436  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 164
Target Start/End: Complemental strand, 30214656 - 30214552
Alignment:
Q  60 ggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaacgggtgttggcttcttcggatttt 159  Q
    |||||||||||||||||||||||||| |  |||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||||| || || ||||    
T  30214656 ggtacatctgtaaccttttcaataaatttatgcatccaaattgggatttggtctttgtgtggtatattgactttaaccggtgttggcttgttggggtttt 30214557  T
Q  160 ttgga 164  Q
    |||||    
T  30214556 ttgga 30214552  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 29810935 - 29810847
Alignment:
Q  47 atggacatcatcaggtacatctgtaaccttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaa 135  Q
    |||| ||||| | |||||||||||||||||||||||||| |  |||||||||||||| ||||||||||||| | |||||| ||||||||    
T  29810935 atggccatcaccgggtacatctgtaaccttttcaataaatttatgcatccaaattggaatttggtctttgtgtagtatgttgactttaa 29810847  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 10926856 - 10926795
Alignment:
Q  75 ttttcaataaagtcttgcatccaaattgggatttggtctttgtatggtatgtggactttaac 136  Q
    ||||||||||  | ||||||||||  |||||||||||||||||  |||||||||||||||||    
T  10926856 ttttcaataattttttgcatccaatgtgggatttggtctttgtgaggtatgtggactttaac 10926795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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