View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0756_low_15 (Length: 279)

Name: NF0756_low_15
Description: NF0756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0756_low_15
NF0756_low_15
[»] chr3 (9 HSPs)
chr3 (48-238)||(5374948-5375138)
chr3 (48-130)||(5363178-5363260)
chr3 (48-130)||(5368394-5368476)
chr3 (58-142)||(5369222-5369306)
chr3 (53-143)||(5356541-5356631)
chr3 (170-210)||(5363276-5363316)
chr3 (173-210)||(5368495-5368532)
chr3 (60-121)||(7126688-7126749)
chr3 (53-129)||(7178718-7178794)
[»] chr6 (2 HSPs)
chr6 (54-121)||(33839541-33839608)
chr6 (61-121)||(33843461-33843521)
[»] chr8 (1 HSPs)
chr8 (53-125)||(30054498-30054570)
[»] chr7 (1 HSPs)
chr7 (56-121)||(44500709-44500774)
[»] chr4 (1 HSPs)
chr4 (60-121)||(36590659-36590720)
[»] scaffold0210 (1 HSPs)
scaffold0210 (61-121)||(15608-15668)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 5374948 - 5375138
Alignment:
Q  48 gcaaccctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggccgatatatttatattttg 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5374948 gcaaccctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggccgatatatttatattttg 5375047  T
Q  148 ttcttcaattgcttgtattttccgtttctttatatataaattttgtctaaaatatataactatccttctttccttcgataggttctctcct 238  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375048 ttcttcaattgcttgtatttttcgtttctttatatataaattttgtctaaaatatataactatccttctttccttcgataggttctctcct 5375138  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 5363178 - 5363260
Alignment:
Q  48 gcaaccctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggcc 130  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5363178 gcaaccctactcagctggctgcttgagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggcc 5363260  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 5368394 - 5368476
Alignment:
Q  48 gcaaccctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggcc 130  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5368394 gcaaccctactcagctggctgctcgagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggcc 5368476  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 5369222 - 5369306
Alignment:
Q  58 tcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggccgatatatttata 142  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  5369222 tcagctggctgcaagagcttgctaatatcaaatcattgacagtctcttctaatactcttcaggttttgaggccgttatatttata 5369306  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 5356541 - 5356631
Alignment:
Q  53 cctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggccgatatatttatat 143  Q
    |||| |||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| | |||||||||||    
T  5356541 cctactcagctggctgctagagcttgccaatataaaatcattgacagtctcttctaatactcttcaggttttgaggctgctatatttatat 5356631  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 5363276 - 5363316
Alignment:
Q  170 cgtttctttatatataaattttgtctaaaatatataactat 210  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  5363276 cgtttctttatatataaattttgtctaaaatgtataactat 5363316  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 5368495 - 5368532
Alignment:
Q  173 ttctttatatataaattttgtctaaaatatataactat 210  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  5368495 ttctttatatataaatttggtctaaaatgtataactat 5368532  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 7126688 - 7126749
Alignment:
Q  60 agctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 121  Q
    |||||| ||| |||||||||| ||| |||| |||| || |||||||| ||||||||||||||    
T  7126688 agctggttgcaagagcttgctgataccaaaacattgaccgtctcttcgaatactcttcaggt 7126749  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 7178718 - 7178794
Alignment:
Q  53 cctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttgaggc 129  Q
    |||| ||| |||||| || ||| |||||||||||| |||||| ||  |||||| || ||||||||||||||| ||||    
T  7178718 cctactcaactggcttctcgagtttgctaatatcacatcattgacgatctcttatagtactcttcaggttttaaggc 7178794  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 33839608 - 33839541
Alignment:
Q  54 ctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 121  Q
    |||||||||||||||||||| |||||||| ||  ||||||||||||||||||| | ||||||||||||    
T  33839608 ctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggt 33839541  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 33843521 - 33843461
Alignment:
Q  61 gctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 121  Q
    ||||||||||||| ||||||||  |  |||||||||||||| |||| || |||||||||||    
T  33843521 gctggctgctagaccttgctaacttagaatcattaacagtcacttcaaaaactcttcaggt 33843461  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 125
Target Start/End: Complemental strand, 30054570 - 30054498
Alignment:
Q  53 cctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggttttg 125  Q
    |||| ||| |||||| ||| || || |||||||||||||||| || ||||||||| |||||||||||||||||    
T  30054570 cctactcaactggctactacagttttctaatatcaaatcattgactgtctcttctgatactcttcaggttttg 30054498  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 44500774 - 44500709
Alignment:
Q  56 attcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 121  Q
    |||||||||||| |||||||||||||| || |||||||| || |||||| | | ||||||||||||    
T  44500774 attcagctggctactagagcttgctaacataaaatcattgacggtctctacaactactcttcaggt 44500709  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 36590720 - 36590659
Alignment:
Q  60 agctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 121  Q
    ||||||||| |||| |||||||||||||||||||| || |||||| | | ||||||||||||    
T  36590720 agctggctgttagaacttgctaatatcaaatcattgacggtctctgcgagtactcttcaggt 36590659  T

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Target: scaffold0210 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 15668 - 15608
Alignment:
Q  61 gctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 121  Q
    |||||||| | |||||  |||||||||||||||| |||||| |||| | ||||||||||||    
T  15668 gctggctggtcgagctcactaatatcaaatcattgacagtcccttcaagtactcttcaggt 15608  T

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