View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0756_low_2 (Length: 568)
Name: NF0756_low_2
Description: NF0756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0756_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 13 - 539
Target Start/End: Original strand, 40568256 - 40568782
Alignment:
| Q |
13 |
taggccaaggtggtcagggaactgtttacaaaggaattttacaaaataaaagaattgtagcaataaaaaagtccaaagtcagtgactcaaaccagattga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40568256 |
taggccaaggtggtcagggaactgtttacaaaggagttttacaaaataaaagaattgtagcaataaaaaagtccaaagtcagtgacccaaaccagattga |
40568355 |
T |
|
| Q |
113 |
gccgttcatcaatgaagtggtcattctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcccttgcttgtt |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40568356 |
gccgttcatcaatgaagtggtcgttctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcccttgcttgtt |
40568455 |
T |
|
| Q |
213 |
tatgaattcattcccaacggcactgtttacgagcatcttcatgatcaaaaccaaactataaaacttacatggaaaaccagattaagaatagcaaaagaaa |
312 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40568456 |
tatgaattcatttccaacggcactgtttacgagcatcttcatgatcaaaaccaaactataaaacttacatggaaaaccagattaagaatagcaaaagaaa |
40568555 |
T |
|
| Q |
313 |
ctgctggagtcctggcatacttgcactctgcggcttctacaccaatcatacatagagatgtgaaatctacaaatatactcctagatcacaatctcactgc |
412 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40568556 |
ctgctggagtcctggcatacttacactctgcggcttcaacaccaatcatacatagagatgtgaaatctacaaatatactcctagatcacaatctcactgc |
40568655 |
T |
|
| Q |
413 |
gaaggtttctgactttggagcttcaaggattgttcctcttgatcatagtcagataaccactctagtacaagggacattagggtatcttgacccagaatac |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40568656 |
gaaggtttctgactttggagcttcaaggattgttcctcttgatcatagtcagataaccactctagtacaagggacattagggtatcttgacccagaatac |
40568755 |
T |
|
| Q |
513 |
ttcctcacaagccagttaacagagaag |
539 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
40568756 |
ttcctcacaagccagttaacagagaag |
40568782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 539
Target Start/End: Original strand, 40579314 - 40579840
Alignment:
| Q |
13 |
taggccaaggtggtcagggaactgtttacaaaggaattttacaaaataaaagaattgtagcaataaaaaagtccaaagtcagtgactcaaaccagattga |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| | |||||| | ||||||||||| |
|
|
| T |
40579314 |
taggccaaggtggtcagggaattgtttacaaaggagttttacaagataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccagattga |
40579413 |
T |
|
| Q |
113 |
gccgttcatcaatgaagtggtcattctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcccttgcttgtt |
212 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||| |||||||||| || |||||| |
|
|
| T |
40579414 |
gtcgttcatcaatgaagtggtcattctttcccaaatcaatcatagaaatgtggtaaagattttgggttgttgtttagagacagaagttccgttacttgtt |
40579513 |
T |
|
| Q |
213 |
tatgaattcattcccaacggcactgtttacgagcatcttcatgatcaaaaccaaactataaaacttacatggaaaaccagattaagaatagcaaaagaaa |
312 |
Q |
| |
|
|| ||||| |||||||| || |||||||| ||||||||||||||| ||| |||| |||| || |||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
40579514 |
tacgaatttattcccaatggtactgtttatgagcatcttcatgatgaaacccaatctatgaagcttacatggaaaacaagattaagaatagcaaaggaag |
40579613 |
T |
|
| Q |
313 |
ctgctggagtcctggcatacttgcactctgcggcttctacaccaatcatacatagagatgtgaaatctacaaatatactcctagatcacaatctcactgc |
412 |
Q |
| |
|
||||||| || |||||||| || |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
40579614 |
ctgctggtgtgctggcatatttacactctgctgcttctacaccaatcatacatagagatgtgaaatcttcaaatatactcctagatcaaaatctcactgc |
40579713 |
T |
|
| Q |
413 |
gaaggtttctgactttggagcttcaaggattgttcctcttgatcatagtcagataaccactctagtacaagggacattagggtatcttgacccagaatac |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40579714 |
aaaggtttctgactttggagcttcaaggattgttcctcttgatcatagtcaaataaacactctagtacaaggaacattagggtatcttgacccagaatac |
40579813 |
T |
|
| Q |
513 |
ttcctcacaagccagttaacagagaag |
539 |
Q |
| |
|
|||| ||||||||| |||||||||||| |
|
|
| T |
40579814 |
ttccacacaagccaattaacagagaag |
40579840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 539
Target Start/End: Original strand, 40572857 - 40573383
Alignment:
| Q |
13 |
taggccaaggtggtcagggaactgtttacaaaggaattttacaaaataaaagaattgtagcaataaaaaagtccaaagtcagtgactcaaaccagattga |
112 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||| | |||||| |||| |
|
|
| T |
40572857 |
taggccaaggtggtcaaggaattgtttacaaaggagttttacaaaataacagaattgtagcaataaaaaagtccaaaataagtgacccgaaccaggttga |
40572956 |
T |
|
| Q |
113 |
gccgttcatcaatgaagtggtcattctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcccttgcttgtt |
212 |
Q |
| |
|
| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||| |||| |
|
|
| T |
40572957 |
gtcgttcatcaatgaagtggtcgtactttcccaaatcaaccatagaaatgtggtaaagatcttgggctgttgtttagagacagaagttcccttagttgtg |
40573056 |
T |
|
| Q |
213 |
tatgaattcattcccaacggcactgtttacgagcatcttcatgatcaaaaccaaactataaaacttacatggaaaaccagattaagaatagcaaaagaaa |
312 |
Q |
| |
|
|||||||| |||||||| || |||||||| |||||||||||||| ||| |||| ||||||| |||||||||||||| || |||||||| ||||||||| |
|
|
| T |
40573057 |
tatgaatttattcccaatggtactgtttatgagcatcttcatgacgaaacccaatctataaagcttacatggaaaacaaggttaagaatttcaaaagaaa |
40573156 |
T |
|
| Q |
313 |
ctgctggagtcctggcatacttgcactctgcggcttctacaccaatcatacatagagatgtgaaatctacaaatatactcctagatcacaatctcactgc |
412 |
Q |
| |
|
|| || |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
40573157 |
tagccggtgtcctggcatacttacactctgctgcttcgacaccaatcatacatagagatgtgaaatcttcaaatatactcctagatcaaaatctcactgc |
40573256 |
T |
|
| Q |
413 |
gaaggtttctgactttggagcttcaaggattgttcctcttgatcatagtcagataaccactctagtacaagggacattagggtatcttgacccagaatac |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40573257 |
aaaggtttctgactttggagcttcaaggattgttcctcttgatcatagtcaaataaacactctagtacaaggaacattagggtatcttgacccagaatac |
40573356 |
T |
|
| Q |
513 |
ttcctcacaagccagttaacagagaag |
539 |
Q |
| |
|
|||| ||||||||| |||||||||||| |
|
|
| T |
40573357 |
ttccacacaagccaattaacagagaag |
40573383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 13 - 514
Target Start/End: Original strand, 40591162 - 40591663
Alignment:
| Q |
13 |
taggccaaggtggtcagggaactgtttacaaaggaattttacaaaataaaagaattgtagcaataaaaaagtccaaagtcagtgactcaaaccagattga |
112 |
Q |
| |
|
||||| ||||| ||||||||| |||||||||||| |||||||| ||||||| |||||||||||||||||||||||| ||| |||| |||||||||||| |
|
|
| T |
40591162 |
taggcaaaggttctcagggaacagtttacaaaggagttttacaagataaaagtattgtagcaataaaaaagtccaaaatcaatgaccaaaaccagattga |
40591261 |
T |
|
| Q |
113 |
gccgttcatcaatgaagtggtcattctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcccttgcttgtt |
212 |
Q |
| |
|
||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
40591262 |
gccattcatcaatgaagtggtcgttctttctcaaatcaaccatagaaatgtggtaagaattttgggttgttgtttagagacagaagttccattgcttgtt |
40591361 |
T |
|
| Q |
213 |
tatgaattcattcccaacggcactgtttacgagcatcttcatgatcaaaaccaaactataaaacttacatggaaaaccagattaagaatagcaaaagaaa |
312 |
Q |
| |
|
||||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||| || ||||||||||| || ||||||||||||||||||| |
|
|
| T |
40591362 |
tatgaattcattcccaatggaactgtttacgatcatcttcatgatcaaaaccaatctataaagctgacatggaaaacaaggttaagaatagcaaaagaaa |
40591461 |
T |
|
| Q |
313 |
ctgctggagtcctggcatacttgcactctgcggcttctacaccaatcatacatagagatgtgaaatctacaaatatactcctagatcacaatctcactgc |
412 |
Q |
| |
|
|||||||||||||||||||||| || ||||| |||||||| |||||||| ||||||||| | ||||||||||| || ||||| ||| |||||||| ||| |
|
|
| T |
40591462 |
ctgctggagtcctggcatacttacattctgctgcttctactccaatcattcatagagatataaaatctacaaacatcctcctcgatgtcaatctcattgc |
40591561 |
T |
|
| Q |
413 |
gaaggtttctgactttggagcttcaaggattgttcctcttgatcatagtcagataaccactctagtacaagggacattagggtatcttgacccagaatac |
512 |
Q |
| |
|
||||||||||| |||||||| |||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||| |||||||| |||||||||||| |
|
|
| T |
40591562 |
aaaggtttctgattttggagcatcaaagattgttcctcttgatcacagtctgataaccactctagtgcaagggacattggggtatctcgacccagaatac |
40591661 |
T |
|
| Q |
513 |
tt |
514 |
Q |
| |
|
|| |
|
|
| T |
40591662 |
tt |
40591663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 539
Target Start/End: Original strand, 40601812 - 40602338
Alignment:
| Q |
13 |
taggccaaggtggtcagggaactgtttacaaaggaattttacaaaataaaagaattgtagcaataaaaaagtccaaagtcagtgactcaaaccagattga |
112 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||| |||| |||||||| |||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
40601812 |
taggccaaggtggtcagggaacagtttacaaaggagttttacaagataacagaattgtcgcaataaaaaagtccacaatcagtgaccaaaaccagattga |
40601911 |
T |
|
| Q |
113 |
gccgttcatcaatgaagtggtcattctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcccttgcttgtt |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
40601912 |
gccgttcatcaatgaagtgatcattctttctcaaatcaaccatagaaatgtggtacagcttttgggttgctgtttagaaacagaagttccattgcttgtt |
40602011 |
T |
|
| Q |
213 |
tatgaattcattcccaacggcactgtttacgagcatcttcatgatcaaaaccaaactataaaacttacatggaaaaccagattaagaatagcaaaagaaa |
312 |
Q |
| |
|
||||| || ||| |||| || |||||||| || |||||||||||||||||||| ||||||| ||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
40602012 |
tatgagtttatttccaatggtactgtttatgatcatcttcatgatcaaaaccagtctataaagcttacatggaacacaagattaagaatagcaacagaaa |
40602111 |
T |
|
| Q |
313 |
ctgctggagtcctggcatacttgcactctgcggcttctacaccaatcatacatagagatgtgaaatctacaaatatactcctagatcacaatctcactgc |
412 |
Q |
| |
|
||||||||||| |||||||||| || ||||| |||||||| |||||||| ||||||||| | ||||||||||| || ||||||||| |||||||| ||| |
|
|
| T |
40602112 |
ctgctggagtcttggcatacttacattctgctgcttctactccaatcattcatagagatataaaatctacaaacatcctcctagatggcaatctcattgc |
40602211 |
T |
|
| Q |
413 |
gaaggtttctgactttggagcttcaaggattgttcctcttgatcatagtcagataaccactctagtacaagggacattagggtatcttgacccagaatac |
512 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||| | |||||||| |||||| || || |||||||| ||||||||||||||||||||| |
|
|
| T |
40602212 |
aaaggtttctgattttggagcttcaaagattgttcctcttgatcacactcagataaacactcttgtgcaggggacattggggtatcttgacccagaatac |
40602311 |
T |
|
| Q |
513 |
ttcctcacaagccagttaacagagaag |
539 |
Q |
| |
|
|||| |||||| |||||| |||||| |
|
|
| T |
40602312 |
ttccagacaagcatgttaactgagaag |
40602338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 40597644 - 40598022
Alignment:
| Q |
13 |
taggccaaggtggtcagggaactgtttacaaaggaattttacaaaataaaagaattgtagcaataaaaaagtccaaagtcagtgactcaaaccagattga |
112 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||| || ||||||| |||||||||||||| ||||| ||| |||||||| ||||||||||||| |
|
|
| T |
40597644 |
taggccaaggtggtcagggaacagtttacaaaggagttttagaagataaaagtattgtagcaataaagaagtcaaaaatcagtgacccaaaccagattga |
40597743 |
T |
|
| Q |
113 |
gccgttcatcaatgaagtggtcattctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcccttgcttgtt |
212 |
Q |
| |
|
| |||||||||||||||||| | | |||||||||||||||||||| ||||||||||| || | |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
40597744 |
gtcgttcatcaatgaagtggccgtgctttcccaaatcaaccataggaatgtggtaaaacttgtaggttgttgtttagaaacagaagttccattgcttgtt |
40597843 |
T |
|
| Q |
213 |
tatgaattcattcccaacggcactgtttacgagcatcttcatgatcaaaaccaaactataaaacttacatggaaaaccagattaagaatagcaaaagaaa |
312 |
Q |
| |
|
|||||||| |||||||| || || ||||| |||||| ||||||| |||||| || ||| ||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
40597844 |
tatgaatttattcccaatggtacagtttatgagcatattcatgaccaaaacgaatctagaaagcttacatggaaaacaagattgagaatagcaaaagaaa |
40597943 |
T |
|
| Q |
313 |
ctgctggagtcctggcatacttgcactctgcggcttctacaccaatcatacatagagatgtgaaatctacaaatatact |
391 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40597944 |
ctgctggagtcctggcatacttacattctgctgcttccacaccaatcatacatagagatgtcaaatctacaaatatact |
40598022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 363 - 539
Target Start/End: Original strand, 40598114 - 40598290
Alignment:
| Q |
363 |
catagagatgtgaaatctacaaatatactcctagatcacaatctcactgcgaaggtttctgactttggagcttcaaggattgttcctcttgatcatagtc |
462 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||| | ||||||||||| ||||| |||||||||||||||||| ||| |||||||||||| | | || |
|
|
| T |
40598114 |
catagagatatcaaatctacaaatatactactagatgaaaatctcactgcaaaggtggctgactttggagcttcaaagatcgttcctcttgataaaactc |
40598213 |
T |
|
| Q |
463 |
agataaccactctagtacaagggacattagggtatcttgacccagaatacttcctcacaagccagttaacagagaag |
539 |
Q |
| |
|
|||||||||| ||||| ||||||||| | |||||||||||||| || ||||||| |||||||||||||||||||||| |
|
|
| T |
40598214 |
agataaccaccctagtgcaagggacactcgggtatcttgaccctgagtacttccacacaagccagttaacagagaag |
40598290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 454
Target Start/End: Original strand, 40588102 - 40588207
Alignment:
| Q |
346 |
cttctacaccaatcatacatagagatgtgaaatctacaaatatactcctagatcacaatctcactgcgaaggtttctgactttggagcttcaaggattgt |
445 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| || ||||| |||| ||||||||||||||||| ||| ||| || ||| ||||||| |||||||| |
|
|
| T |
40588102 |
cttcaacaccaatcatacatagagatgtgaaaacttcaaatgtactt---gatcacaatctcactgcaaagttttgggattttagagcttctaggattgt |
40588198 |
T |
|
| Q |
446 |
tcctcttga |
454 |
Q |
| |
|
||||||||| |
|
|
| T |
40588199 |
tcctcttga |
40588207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 539
Target Start/End: Complemental strand, 2015480 - 2014954
Alignment:
| Q |
13 |
taggccaaggtggtcagggaactgtttacaaaggaattttacaaaataaaagaattgtagcaataaaaaagtccaaagtcagtgactcaaaccagattga |
112 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||| |||||||| |||||||||||||||| || || ||||||||| |||||||| | ||||||||||| |
|
|
| T |
2015480 |
taggccaaggaggtcagggaacagtttacaaaggagttttacaagataaaagaattgtagctattaagaagtccaaaatcagtgaccctaaccagattga |
2015381 |
T |
|
| Q |
113 |
gccgttcatcaatgaagtggtcattctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcccttgcttgtt |
212 |
Q |
| |
|
||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| |
|
|
| T |
2015380 |
gccgttcatcaatgaagtgattgtgctttcacaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagacagaagttcctttacttgtt |
2015281 |
T |
|
| Q |
213 |
tatgaattcattcccaacggcactgtttacgagcatcttcatgatcaaaaccaaactataaaacttacatggaaaaccagattaagaatagcaaaagaaa |
312 |
Q |
| |
|
|| |||||||||||||| || |||||||| |||||||||||||||||||| | |||| |||| |||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
2015280 |
tacgaattcattcccaatggtactgtttatgagcatcttcatgatcaaaatccaactttaaagcttacatggaaaacaagattgagaatagcaaaagaaa |
2015181 |
T |
|
| Q |
313 |
ctgctggagtcctggcatacttgcactctgcggcttctacaccaatcatacatagagatgtgaaatctacaaatatactcctagatcacaatctcactgc |
412 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| || |
|
|
| T |
2015180 |
ctgctggagtcctagcatacttgcattctgctgcatctacaccaatcatacatagagatgtgaaatcttcaaacatactcctagatcgcaatctcacggc |
2015081 |
T |
|
| Q |
413 |
gaaggtttctgactttggagcttcaaggattgttcctcttgatcatagtcagataaccactctagtacaagggacattagggtatcttgacccagaatac |
512 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || |||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
2015080 |
aaaggtttctgactttggagcttctaggattgttcctcttgaccatagtcagataaaaaccctagtacaagggacatgggggtaccttgacccggaatat |
2014981 |
T |
|
| Q |
513 |
ttcctcacaagccagttaacagagaag |
539 |
Q |
| |
|
|||| ||||||||| || ||||||||| |
|
|
| T |
2014980 |
ttccacacaagccaattgacagagaag |
2014954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 11845090 - 11845181
Alignment:
| Q |
135 |
attctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcccttgcttgtttatgaattcattcc |
226 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| ||| | || || |||||||| ||| ||||| |||| ||||||||||||||||||||||| |
|
|
| T |
11845090 |
attctttcacaaatcaacaatagaaatgtggtcaagatattaggatgttgtttggagacagaaattccattgcttgtttatgaattcattcc |
11845181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 11849819 - 11849910
Alignment:
| Q |
135 |
attctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcccttgcttgtttatgaattcattcc |
226 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| ||| | || || |||||||| ||| ||||| |||| ||||||||||||||||||||||| |
|
|
| T |
11849819 |
attctttcacaaatcaacaatagaaatgtggtcaagatattaggatgttgtttggagacagaaattccattgcttgtttatgaattcattcc |
11849910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 123 - 514
Target Start/End: Complemental strand, 13765822 - 13765431
Alignment:
| Q |
123 |
aatgaagtggtcattctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcccttgcttgtttatgaattca |
222 |
Q |
| |
|
||||| || ||||||| ||| ||||||||| || |||||||||||| | ||| |||||||||||||| ||||||||||||| ||| |||| ||||| | |
|
|
| T |
13765822 |
aatgatgtagtcattcattctaaaatcaaccgta-aaatgtggtaaattttttgagttgttgtttagagacagaagttcccttacttctttacgaattta |
13765724 |
T |
|
| Q |
223 |
ttcccaacggcactgtttacgagcatcttcatgatcaaaaccaaactataaaacttacatggaaaaccagattaagaatagcaaaagaaactgctggagt |
322 |
Q |
| |
|
|||| |||| | |||||| | |||| || ||||||||| |||| || ||| |||||||||||||| ||||| ||||||| || |||| || |||||| |
|
|
| T |
13765723 |
ttcctaacgatattgtttatgcgcatattaatgatcaaagccaatctttaatgcttacatggaaaacaagattgagaatagaaatagaagttgatggagt |
13765624 |
T |
|
| Q |
323 |
cctggcatacttgcactctgcggcttctacaccaatcatacatagagatgtgaaatctacaaatatactcctagatcacaatctcactgc-gaaggtttc |
421 |
Q |
| |
|
|||| | ||||| | | | |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
13765623 |
cctgacgaacttgtgttatactgcttctacaccaatcatacatatagatgtgaactctacaaatatactcctagatcacagtctcactacaaaaggtttt |
13765524 |
T |
|
| Q |
422 |
tgactttggagcttcaaggattgttcctcttgatcatagtcagataaccactctagtacaagggacattagggtatcttgacccagaatactt |
514 |
Q |
| |
|
|||||| | || ||||| ||| ||||||||||||||||| |||||||||||||||| || |||||| |||||||||||||| |||||||| |
|
|
| T |
13765523 |
tgacttcgaagattcaataattattcctcttgatcatagttagataaccactctagtgcagatgacattggggtatcttgaccctgaatactt |
13765431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 375 - 514
Target Start/End: Complemental strand, 14153358 - 14153219
Alignment:
| Q |
375 |
aaatctacaaatatactcctagatcacaatctcactgcgaaggtttctgactttggagcttcaaggattgttcctcttgatcatagtcagataaccactc |
474 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14153358 |
aaatatacaaatatactcttagatcacaatctcactgcaaaagttttcgactttagagcttcaaggattgttcctcttgatcatagccagataaccactc |
14153259 |
T |
|
| Q |
475 |
tagtacaagggacattagggtatcttgacccagaatactt |
514 |
Q |
| |
|
|| | || |||||||| |||||||||| |||||||||| |
|
|
| T |
14153258 |
tactgcaggggacattgaggtatcttgatgcagaatactt |
14153219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 122 - 295
Target Start/End: Complemental strand, 14153584 - 14153415
Alignment:
| Q |
122 |
caatgaagtggtcattctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgttt-agagtcagaagttcccttgcttgtttatgaatt |
220 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||| |||||||||||| || |||||||||| ||| |||| |||||||||| |||||||| ||||| |
|
|
| T |
14153584 |
caataaagtggtcgttctttcccaaatcaaccatataaatgtggtaaatcttttgggttgttttttaagagacagaagttcc----cttgtttacgaatt |
14153489 |
T |
|
| Q |
221 |
cattcccaacggcactgtttacgagcatcttcatgatcaaaaccaaactataaaacttacatggaaaaccagatt |
295 |
Q |
| |
|
||| ||| || | |||||| | ||||||||||||||||||||| || |||| |||||||||||||| ||||| |
|
|
| T |
14153488 |
tatt-gcaatggtattgtttattatcatcttcatgatcaaaaccaatctttaaagcttacatggaaaacaagatt |
14153415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 216 - 325
Target Start/End: Complemental strand, 14023002 - 14022893
Alignment:
| Q |
216 |
gaattcattcccaacggcactgtttacgagcatcttcatgatcaaaaccaaactataaaacttacatggaaaaccagattaagaatagcaaaagaaactg |
315 |
Q |
| |
|
||||| ||| |||| || |||||||| |||||||||||||||||||||||| || ||| |||||||||||||| ||||| |||||||||||||||| || |
|
|
| T |
14023002 |
gaatttatttccaatggtactgtttatgagcatcttcatgatcaaaaccaatctttaacgcttacatggaaaacaagattgagaatagcaaaagaaattg |
14022903 |
T |
|
| Q |
316 |
ctggagtcct |
325 |
Q |
| |
|
||||| |||| |
|
|
| T |
14022902 |
ctggactcct |
14022893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 117 - 392
Target Start/End: Original strand, 14155044 - 14155308
Alignment:
| Q |
117 |
ttcatcaatgaagtggtcattctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcccttgcttgtttatg |
216 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||||||||||||||||| || |||||||| |||||| || | |||||| | |
|
|
| T |
14155044 |
ttcatcaatgaaatggttgttctttcccaaatcaatcatagaaatgtggtaaagct-tttggttgttgcttagagaca------------catgtttacg |
14155130 |
T |
|
| Q |
217 |
aattcattcccaacggcactgtttacgagcatcttcatgatcaaaaccaaactataaaacttacatggaaaaccagattaagaatagcaaaagaaactgc |
316 |
Q |
| |
|
|||| |||| ||| || ||||||| |||||||||||||||||||||||| || |||| ||||| ||||| || ||| | ||||| |||||||||||| |
|
|
| T |
14155131 |
aatttattctcaatggtactgtttttgagcatcttcatgatcaaaaccaatctttaaagcttacttggaatacaagaatgagaatggcaaaagaaactat |
14155230 |
T |
|
| Q |
317 |
tgga-----gtcctggcatacttgcactctgcggcttctacaccaatcatacatagagatgtgaaatctacaaatatactc |
392 |
Q |
| |
|
|||| ||||||||||||| || || | ||||||||| |||||||| ||||||||||||||| |||||||||| |
|
|
| T |
14155231 |
tggactcttatcctggcatactttcattcaactgcttctacattaatcatac---gagatgtgaaatctaaaaatatactc |
14155308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 433 - 478
Target Start/End: Original strand, 14155316 - 14155361
Alignment:
| Q |
433 |
cttcaaggattgttcctcttgatcatagtcagataaccactctagt |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14155316 |
cttcaaggattgttcctcttgatcatagtcagaaaaccactctagt |
14155361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 14023221 - 14023326
Alignment:
| Q |
116 |
gttcatcaatgaagtggtcattctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgttt-agagtcagaagttcccttgcttgttta |
214 |
Q |
| |
|
|||| ||||| |||||||| |||||||| ||||||| |||| ||||||||| | || |||||||||| ||| | || ||||||||| ||| |||||||| |
|
|
| T |
14023221 |
gttcgtcaataaagtggtcgttctttccaaaatcaatcatataaatgtggtgattcttttgggttgtttttttaaagacagaagttctcttacttgttta |
14023320 |
T |
|
| Q |
215 |
tgaatt |
220 |
Q |
| |
|
|||||| |
|
|
| T |
14023321 |
tgaatt |
14023326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 510
Target Start/End: Original strand, 14021501 - 14021544
Alignment:
| Q |
467 |
aaccactctagtacaagggacattagggtatcttgacccagaat |
510 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
14021501 |
aaccactctagtgcaagggacatttgggtatcttgacctagaat |
14021544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 14023088 - 14023015
Alignment:
| Q |
117 |
ttcatcaatgaagtggtcattctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagag |
191 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||| ||| |||| ||| ||||||| ||||||| |||||||||| |
|
|
| T |
14023088 |
ttcatcaatgaaatggttattctt-cccaaatcagtcatcgaaaggtgctaaagcttttgggtttttgtttagag |
14023015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 14153407 - 14153369
Alignment:
| Q |
374 |
gaaatctacaaatatactcctagatcacaatctcactgc |
412 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
14153407 |
gaaatatacaaatatactcttagatcacaatctcactgc |
14153369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 1868401 - 1868504
Alignment:
| Q |
117 |
ttcatcaatgaagtggtcattctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcccttgcttgtttatg |
216 |
Q |
| |
|
||||| ||||| ||||| |||| || ||||| || ||||| ||||| || || |||||||| |||||||||||| |||||||||| ||| | ||||||| |
|
|
| T |
1868401 |
ttcattaatgaggtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatg |
1868500 |
T |
|
| Q |
217 |
aatt |
220 |
Q |
| |
|
|||| |
|
|
| T |
1868501 |
aatt |
1868504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 9162044 - 9161978
Alignment:
| Q |
136 |
ttctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcc |
202 |
Q |
| |
|
|||| |||||||| || ||||||||||| || || |||||||| |||||||||||| |||||||||| |
|
|
| T |
9162044 |
ttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttagagacagaagttcc |
9161978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 1842810 - 1842895
Alignment:
| Q |
135 |
attctttcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcccttgcttgtttatgaatt |
220 |
Q |
| |
|
||||| || ||||| || ||||| ||||| || || |||||||| |||||||||||| |||||||||| ||| | ||||||||||| |
|
|
| T |
1842810 |
attctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatgaatt |
1842895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 9229833 - 9229754
Alignment:
| Q |
141 |
tcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcccttgcttgtttatgaatt |
220 |
Q |
| |
|
|||||||| || ||||||||||| || || |||||||| |||||||| ||| || ||||||| || || ||||||||||| |
|
|
| T |
9229833 |
tcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttggagacacaagttcctttactagtttatgaatt |
9229754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 9156127 - 9156066
Alignment:
| Q |
141 |
tcccaaatcaaccatagaaatgtggtaaagctcttgggttgttgtttagagtcagaagttcc |
202 |
Q |
| |
|
|||||||| || || |||||||| || || |||||||| |||||||||||| |||||||||| |
|
|
| T |
9156127 |
tcccaaataaatcacagaaatgttgtcaaactcttgggatgttgtttagagacagaagttcc |
9156066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University