View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0756_low_20 (Length: 251)

Name: NF0756_low_20
Description: NF0756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0756_low_20
NF0756_low_20
[»] chr1 (12 HSPs)
chr1 (23-209)||(16584864-16585050)
chr1 (23-155)||(25785805-25785937)
chr1 (23-201)||(8083994-8084173)
chr1 (23-185)||(1161433-1161594)
chr1 (23-154)||(11619973-11620104)
chr1 (23-207)||(18461120-18461295)
chr1 (51-209)||(42009997-42010155)
chr1 (51-201)||(512961-513111)
chr1 (117-210)||(32678514-32678607)
chr1 (119-201)||(8414674-8414756)
chr1 (32-164)||(11911629-11911762)
chr1 (119-186)||(27320560-27320627)
[»] chr8 (12 HSPs)
chr8 (23-251)||(17722420-17722637)
chr8 (23-209)||(35948827-35949013)
chr8 (23-209)||(7956340-7956516)
chr8 (23-209)||(44223327-44223503)
chr8 (72-209)||(9505015-9505153)
chr8 (51-156)||(3767684-3767789)
chr8 (51-209)||(16570890-16571047)
chr8 (72-209)||(32321799-32321936)
chr8 (51-201)||(34760834-34760975)
chr8 (34-108)||(9040513-9040587)
chr8 (157-209)||(9040427-9040479)
chr8 (124-160)||(8266063-8266099)
[»] chr4 (7 HSPs)
chr4 (30-209)||(23107918-23108097)
chr4 (23-206)||(4413456-4413640)
chr4 (23-210)||(24466315-24466502)
chr4 (23-187)||(28319290-28319454)
chr4 (72-201)||(53393204-53393333)
chr4 (72-206)||(8606181-8606315)
chr4 (120-209)||(39839064-39839153)
[»] chr5 (8 HSPs)
chr5 (33-210)||(16746550-16746727)
chr5 (37-209)||(31895896-31896068)
chr5 (23-206)||(19947711-19947894)
chr5 (23-150)||(16746421-16746548)
chr5 (72-187)||(1498243-1498358)
chr5 (58-201)||(29126091-29126234)
chr5 (161-199)||(41092125-41092163)
chr5 (118-178)||(30126223-30126283)
[»] scaffold0879 (1 HSPs)
scaffold0879 (23-210)||(580-767)
[»] chr7 (13 HSPs)
chr7 (23-210)||(39695086-39695268)
chr7 (39-209)||(7352385-7352555)
chr7 (23-148)||(46993309-46993434)
chr7 (30-156)||(7994998-7995124)
chr7 (51-209)||(48070614-48070772)
chr7 (72-209)||(3996991-3997128)
chr7 (23-154)||(11727328-11727449)
chr7 (73-177)||(46265353-46265457)
chr7 (37-177)||(2922986-2923125)
chr7 (118-201)||(12013026-12013109)
chr7 (58-209)||(27226938-27227089)
chr7 (145-201)||(12471855-12471911)
chr7 (145-197)||(35738239-35738291)
[»] chr2 (11 HSPs)
chr2 (23-209)||(31111413-31111599)
chr2 (23-207)||(13852269-13852453)
chr2 (23-156)||(4638207-4638340)
chr2 (51-209)||(29109190-29109348)
chr2 (50-197)||(3919882-3920029)
chr2 (90-209)||(12893980-12894099)
chr2 (23-90)||(36009278-36009345)
chr2 (25-156)||(38607020-38607150)
chr2 (78-164)||(37630375-37630461)
chr2 (72-201)||(5526225-5526353)
chr2 (123-210)||(30906942-30907029)
[»] chr3 (12 HSPs)
chr3 (30-209)||(46655514-46655694)
chr3 (58-206)||(44471020-44471168)
chr3 (34-210)||(11503337-11503513)
chr3 (58-210)||(30554574-30554726)
chr3 (112-201)||(46892612-46892701)
chr3 (72-173)||(27524053-27524154)
chr3 (58-154)||(779533-779629)
chr3 (113-201)||(23307117-23307205)
chr3 (144-207)||(12937849-12937912)
chr3 (51-209)||(26757593-26757751)
chr3 (78-164)||(44285605-44285691)
chr3 (109-209)||(23659401-23659501)
[»] scaffold0565 (1 HSPs)
scaffold0565 (23-149)||(1844-1970)
[»] chr6 (7 HSPs)
chr6 (73-206)||(7176529-7176662)
chr6 (72-179)||(23301441-23301548)
chr6 (119-209)||(11971456-11971546)
chr6 (51-179)||(23300455-23300583)
chr6 (52-154)||(7551423-7551525)
chr6 (78-199)||(9826747-9826868)
chr6 (72-149)||(23585913-23585990)
[»] scaffold0070 (1 HSPs)
scaffold0070 (119-209)||(33729-33819)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 16584864 - 16585050
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| |||||||||||    
T  16584864 atcatcagattggttcatcggtttcacggatctcgaaataaaaaaccatgaaccaaaccaaactagatcggtatcgattggttcggatcggtttcaaacc 16584963  T
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  16584964 gaaccaaacaaggttggatattttttcgttttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 16585050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 25785937 - 25785805
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  25785937 atcatcggattggttcatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactatatcggtttcgattggttcggatcggtttcaaacc 25785838  T
Q  123 gaaccaaacaaggttggatattttttcggtttg 155  Q
    |||||||||||||| ||||||||||||||||||    
T  25785837 gaaccaaacaaggtcggatattttttcggtttg 25785805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 8084173 - 8083994
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| ||||| |||||| ||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8084173 atcatcggattgattcatcagtttcacggatcttgaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcggattggtttcaaacc 8084074  T
Q  123 gaaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 201  Q
     ||||||||||||| ||||||| ||||||||||| ||  ||||||||||||| |||| |||||| | | |||||||||||    
T  8084073 aaaccaaacaaggtcggatatttttttcggtttgatttagtttggactttcgatttcgttggttatgtccgaaccactta 8083994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 1161433 - 1161594
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| |||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||    
T  1161433 atcatcggattggttcatcggtttcacggatatcgaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggcttggattggtttcaaacc 1161532  T
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggtt 185  Q
    |||||||| ||||| ||||| |||||||||||||||||||||  ||||| | |||| ||||||    
T  1161533 gaaccaaataaggtcggata-tttttcggtttggttcggtttaaacttttgatttcgttggtt 1161594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 11620104 - 11619973
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||     
T  11620104 atcatcggattggttcatcggtttcacagatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattagtttggatcggtttcaaact 11620005  T
Q  123 gaaccaaacaaggttggatattttttcggttt 154  Q
    |||||||||||| | ||||||||||| |||||    
T  11620004 gaaccaaacaagatcggatatttttttggttt 11619973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 18461295 - 18461120
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| || | ||| | ||| |||||    
T  18461295 atcatcggattggttcatcggtttcacggatctcgaaataaaaaatcatgaaccaaaccaaactaaatcggttttgattggtccagatcgatttgaaacc 18461196  T
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 207  Q
    |||| ||||||||| |||||         ||||||| |||||||||||| |||||| |||||||| || |||||||||| |||||    
T  18461195 gaactaaacaaggtcggata---------tttggtttggtttggacttttggtttcgttggttttgtttgaaccacttacacccc 18461120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 51 - 209
Target Start/End: Original strand, 42009997 - 42010155
Alignment:
Q  51 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 150  Q
    |||||| |||| ||||| |||||  ||||| |||||||||||||||| ||| ||| |||| |||||||||||||||||||||| || |||||||||||||    
T  42009997 gatctcaaaatgaaaaaccatgagtcaaactaaactagatcggtttcaattggtttggatcggtttcaaaccgaaccaaacaatgtcggatattttttcg 42010096  T
Q  151 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    ||||||| | ||||||||| |||||||| ||||||| || |||||| |||| |||||||    
T  42010097 gtttggtccagtttggactatcggtttcgttggtttaatccgaaccgcttacaccccta 42010155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 513111 - 512961
Alignment:
Q  51 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 150  Q
    |||||| |||| |||||| | ||| | || |||||||||||||||| | || |||||| |||||||  |||||||||||||||| ||||||| |||||||    
T  513111 gatctcaaaattaaaaattaagaatcgaatcaaactagatcggtttaggttggttcggtttggttttgaaccgaaccaaacaagattggatactttttcg 513012  T
Q  151 gtttggttcggtttggactttcggtttcattggttttattcgaaccactta 201  Q
    |||||||||| |||||  ||| | ||||||  ||||| | |||||||||||    
T  513011 gtttggttcgatttgggtttttgatttcatcagttttgtccgaaccactta 512961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 210
Target Start/End: Original strand, 32678514 - 32678607
Alignment:
Q  117 caaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 210  Q
    |||||| ||||||||||||| |||||||||||||| || |||||||||| | ||||| |||||| |||||| ||||||||||||| ||| ||||    
T  32678514 caaaccaaaccaaacaaggtcggatattttttcggcttagttcggtttgaattttcgatttcatcggttttgttcgaaccacttacacctctat 32678607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 8414674 - 8414756
Alignment:
Q  119 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 201  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| ||||||| |||| ||||||| |||||| | |||||||||||    
T  8414674 aaccaaaccaaacaaggtcggatactttttcggttttgttcagtttggattttcagtttcatcggttttgtccgaaccactta 8414756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 11911762 - 11911629
Alignment:
Q  32 ttggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaac 131  Q
    ||||||||||||||   | ||| || |||| ||||| || |||| ||| |||||||||||||||| | || |||||| | |||||  |||||||||||||    
T  11911762 ttggttcatcggttcatcggatttcaaaattaaaaaccaagaactaaatcaaactagatcggtttaggttggttcggttcggttttgaaccgaaccaaac 11911663  T
Q  132 aaggttggata-ttttttcggtttggttcggttt 164  Q
    ||||| ||||| ||||||||  |||||| |||||    
T  11911662 aaggtcggatacttttttcgaattggtttggttt 11911629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 27320560 - 27320627
Alignment:
Q  119 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttt 186  Q
    |||||||||||||||||| ||||| ||||| | |||| ||| |||| || |||||||||||| |||||    
T  27320560 aaccgaaccaaacaaggtcggatacttttttgatttgattcagtttagattttcggtttcatcggttt 27320627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 17722420 - 17722637
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17722420 atcatcggattggttcatcggtttcacagatctcgaaatgaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 17722519  T
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctatctctcgttgann 222  Q
    ||||||||||||||||||||||||          | ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||      
T  17722520 gaaccaaacaaggttggatatttt----------tccggtttggactttcggtttcattggttttatccgaaccatttacacccctatctctcgttga-t 17722608  T
Q  223 nnnnncgtcaattttcgtcatcccttttt 251  Q
         | ||||||||||||||||||||||    
T  17722609 tttttcttcaattttcgtcatcccttttt 17722637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 35949013 - 35948827
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| |||||||||||||||||||  ||||||||||| ||||| |||||| ||||||||||||||||| ||| || |  ||||||| |||||||||||    
T  35949013 atcatcggattggttcatcggtttcatggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcgattttgaatgattcggatcggtttcaaacc 35948914  T
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    ||||||||||| || ||||||||||| | ||||||||  |||||||||||| |||| |||||||| | |||| |||||| |||||||    
T  35948913 gaaccaaacaaagtcggatatttttttgttttggttcaatttggactttcgttttcgttggttttgtccgaaacacttacaccccta 35948827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 7956340 - 7956516
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| ||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||    
T  7956340 atcatcggattggttcatcggtttcacatatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcgattggttcgaatcggtttcaaacc 7956439  T
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
     ||| || |||||| | |||||||          |||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  7956440 aaacaaagcaaggtcgaatatttt----------ttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 7956516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 44223327 - 44223503
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||| ||||| ||||     
T  44223327 atcatcggattggttcatcggtttcacggatctcgaaatgaaaaatcatgaaccaaaccaaactagattggtttcgattggttcagatcggttttaaact 44223426  T
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    |||||||||||| |   |||||||          |||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  44223427 gaaccaaacaagatcatatatttt----------ttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 44223503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 209
Target Start/End: Complemental strand, 9505153 - 9505015
Alignment:
Q  72 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatatttttt-cggtttggttcggtttggactt 170  Q
    ||||| |||||||||| |||||||| | || |||||| | | |||  || ||||||||||||||||||||||||||| || ||||||| |||||||| ||    
T  9505153 gaaccgaaccaaactatatcggttttggttggttcggttcgattttgaatcgaaccaaacaaggttggatatttttttcgttttggttaggtttggattt 9505054  T
Q  171 tcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    |||||||||| |||||||| | ||||||||| |||||||    
T  9505053 tcggtttcatcggttttatccaaaccacttacaccccta 9505015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 3767684 - 3767789
Alignment:
Q  51 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 150  Q
    |||||| |||||||||| |  ||||||||||||||||||||||||| |||| |||||| | |||||  |||||||| ||||||||| ||||| |||||||    
T  3767684 gatctcaaaataaaaaaccgagaaccaaaccaaactagatcggtttagattggttcggttcggttttgaaccgaactaaacaaggtcggatactttttcg 3767783  T
Q  151 gtttgg 156  Q
    ||||||    
T  3767784 gtttgg 3767789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 209
Target Start/End: Original strand, 16570890 - 16571047
Alignment:
Q  51 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 150  Q
    |||||| |||| |||||||  ||||| ||||||| ||||||||||| | || ||| || | |||||  |||| ||||||||||||||||||||||||| |    
T  16570890 gatctcaaaattaaaaatcgagaacctaaccaaattagatcggtttaggttggtttggttcggttttgaaccaaaccaaacaaggttggatatttttt-g 16570988  T
Q  151 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    ||||||||||||||| | ||| | |||||| |||||| | | ||||| ||| |||||||    
T  16570989 gtttggttcggtttgaatttttgatttcatcggttttgtccaaaccaattacaccccta 16571047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 209
Target Start/End: Complemental strand, 32321936 - 32321799
Alignment:
Q  72 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 171  Q
    ||||| ||||||| |||||||||||   ||  ||||| ||| ||| ||||||||||||||||||| | ||| |||||||||||| || ||||| |  |||    
T  32321936 gaaccgaaccaaattagatcggtttatgttgattcggtttgtttttaaaccgaaccaaacaaggtcgaatactttttcggtttgatttggtttaggtttt 32321837  T
Q  172 cggtttcattggttttattcgaaccacttaaaccccta 209  Q
    |||||||||  ||||||| ||||||||||  |||||||    
T  32321836 cggtttcatcagttttatccgaaccacttgcaccccta 32321799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 201
Target Start/End: Original strand, 34760834 - 34760975
Alignment:
Q  51 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 150  Q
    |||||| |||| ||||| || ||||||||||||||||||||||||| | || |||||| | | |||  |||||||||||||||| |  |||| |||||      
T  34760834 gatctcaaaatcaaaaaccaagaaccaaaccaaactagatcggtttaggttggttcggttcgattttgaaccgaaccaaacaagatcagatacttttt-- 34760931  T
Q  151 gtttggttcggtttggactttcggtttcattggttttattcgaaccactta 201  Q
           |||||||||| |||||||||||| |||||| |||||||| ||||    
T  34760932 -------tcggtttggattttcggtttcatcggttttgttcgaaccgctta 34760975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 9040587 - 9040513
Alignment:
Q  34 ggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcgg 108  Q
    ||||||||||||||  ||||||| |||| ||||| |  |||||||||||||| |||||||||| |||| ||||||    
T  9040587 ggttcatcggtttcttagatctcaaaatgaaaaaccgagaaccaaaccaaacaagatcggtttagattggttcgg 9040513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 9040479 - 9040427
Alignment:
Q  157 ttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    ||||||||||||||||| |||||| |||||||| |||||| |||| |||||||    
T  9040479 ttcggtttggactttcgatttcatcggttttatccgaaccgcttataccccta 9040427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 8266099 - 8266063
Alignment:
Q  124 aaccaaacaaggttggatattttttcggtttggttcg 160  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  8266099 aaccaaataaggttggatactttttcggtttggttcg 8266063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 30 - 209
Target Start/End: Original strand, 23107918 - 23108097
Alignment:
Q  30 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 129  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  23107918 gattggttcatcggtttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggttcggatcggtttcaaaccaaaccaa 23108017  T
Q  130 acaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    ||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||    
T  23108018 acaaggtcggatatttttcctgtttggttcggtttggactttcggtttcgttggttttgtccgaaccacttacaccccta 23108097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 4413640 - 4413456
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| |||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||    
T  4413640 atcatcggattggtttatcggtttcacggatctcgaaatgaaaaaccatgaaccaaagcaaactagatcggtttcgattggttcggatcggttttaaacc 4413541  T
Q  123 gaaccaaacaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 206  Q
    |||||||||||| | ||||||| |||||||| | |||| ||||| ||||| |||||| |||||||||| ||||||||||| ||||    
T  4413540 gaaccaaacaagatcggatatttttttcggtctagttcagtttgaacttttggtttcgttggttttatccgaaccacttacaccc 4413456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 24466315 - 24466502
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| |||||||||||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||    
T  24466315 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatcggtttcaaacc 24466414  T
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 210  Q
    |||||||||||| |  ||||||||||| |||||||  |||||||||| |||||||| |||||||  |  |||||||||| ||||||||    
T  24466415 gaaccaaacaagatcagatattttttcagtttggtctggtttggactatcggtttcgttggtttagtctgaaccacttacacccctat 24466502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 28319290 - 28319454
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||||||||| |||||| | |||||  |||||||||| ||||| |||||||||||||||| || |||| ||| |||| |||||||  |||||||||||    
T  28319290 atcatcagattgattcatcaggttcacgaatctcgaaatgaaaaaccatgaaccaaaccaaattaaatcgattttgattggttcggaacggtttcaaacc 28319389  T
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggtttt 187  Q
    ||||||||||| ||  |||||||||||||||||||||| ||| |||||||| |||| ||||||||    
T  28319390 gaaccaaacaatgtcagatattttttcggtttggttcgatttagactttcgatttcgttggtttt 28319454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 201
Target Start/End: Original strand, 53393204 - 53393333
Alignment:
Q  72 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 171  Q
    ||||| ||||||||||||||||||| | || |||||| |  |||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||    
T  53393204 gaaccgaaccaaactagatcggtttaggttggttcggttcagttttaaaccgaaccaaacaaggtcggatacttttttggtttggttcggtttggatttt 53393303  T
Q  172 cggtttcattggttttattcgaaccactta 201  Q
    ||||||||| |||||| | |||||||||||    
T  53393304 cggtttcatcggttttgtccgaaccactta 53393333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 8606181 - 8606315
Alignment:
Q  72 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 171  Q
    ||||| |||||| | |||||||||| |||| |||||  |||||||  |||||| |||||||| |||||||| |||||||||||||||   ||| |||| |    
T  8606181 gaaccgaaccaaccaagatcggtttagattggttcgatttggttttgaaccgagccaaacaaagttggatactttttcggtttggtttaattttgactat 8606280  T
Q  172 cggtttcattggttttattcgaaccacttaaaccc 206  Q
    | ||||| | |||||| | ||||||||||| ||||    
T  8606281 cagtttcgtcggttttgtccgaaccacttacaccc 8606315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 39839064 - 39839153
Alignment:
Q  120 accgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    |||||||||||||||||   ||| |||||| ||||| || |||||||| |||||||||||| |||||  | ||||||||||| |||||||    
T  39839064 accgaaccaaacaaggtcaaatactttttcagtttgatttggtttggattttcggtttcatcggtttcgtccgaaccacttacaccccta 39839153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 33 - 210
Target Start/End: Original strand, 16746550 - 16746727
Alignment:
Q  33 tggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaaca 132  Q
    |||||||||| |||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||    
T  16746550 tggttcatcgatttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaaccgaaccaaaca 16746649  T
Q  133 aggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 210  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| | ||||||||||| | ||||||    
T  16746650 aggttggatattttttcgatttggttcggtttagactttcggtttcgttggttttgtccgaaccacttacatccctat 16746727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 37 - 209
Target Start/End: Complemental strand, 31896068 - 31895896
Alignment:
Q  37 tcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggt 136  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||    
T  31896068 tcatcggtttcacggatcacgaaataaaaaatcatgaaccaaaccaaactagatcggtttggattggttcagatcggtttcaaaccgaaccaaacaaggt 31895969  T
Q  137 tggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
     |||||||||||||||||||||| ||||||||||||| |||  |||||||| | ||||||||||| |||||||    
T  31895968 cggatattttttcggtttggttcagtttggactttcgattttgttggttttgtccgaaccacttacaccccta 31895896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 19947894 - 19947711
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| |||||||||||||||||||| ||||| ||||| ||||| ||||||||||| |||| |||||| | ||||||| ||| |||| ||||||||||     
T  19947894 atcatcggattggttcatcggtttcacggatcttgaaatgaaaaaccatgaaccaaatcaaagtagatcagattcgattggtttggatcggtttcaaact 19947795  T
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 206  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||| |||| | ||||||||||| ||||    
T  19947794 gaaccaaacaatgtcggatattttttcggtttggttcggtttggactttcggattcgttgattttgtccgaaccacttacaccc 19947711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 16746421 - 16746548
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| ||||||||||||| |||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||| |||| |||||||||||    
T  16746421 atcatcggattggttcatcgatttcacggatctcgaaatgaaaaaccatgaatcaaaccaaactagatcggtttcgattggtttggatcggtttcaaacc 16746520  T
Q  123 gaaccaaacaaggttggatattttttcg 150  Q
    ||||||||||||||||||||||||||||    
T  16746521 gaaccaaacaaggttggatattttttcg 16746548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 1498243 - 1498358
Alignment:
Q  72 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 171  Q
    |||||||||  ||||| |||||||| | || |||| | | |||||  |||||||||||||||||| ||||||||| || ||||| ||||||||||| |||    
T  1498243 gaaccaaacttaactacatcggtttaggttggttcagttcggttttgaaccgaaccaaacaaggtcggatattttctcagtttgattcggtttggatttt 1498342  T
Q  172 cggtttcattggtttt 187  Q
    ||||||||| ||||||    
T  1498343 cggtttcatcggtttt 1498358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 201
Target Start/End: Complemental strand, 29126234 - 29126091
Alignment:
Q  58 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 157  Q
    |||||||||||   ||||||||| |||||||| |||||| | || |||  | | |||||||||| || ||||||||  | ||||| ||||||||||||||    
T  29126234 aaataaaaaattgagaaccaaactaaactagaccggtttaggttggtttagttcggtttcaaactgacccaaacaaaatcggatactttttcggtttggt 29126135  T
Q  158 tcggtttggactttcggtttcattggttttattcgaaccactta 201  Q
    |||||||  | | ||  |||| |||||||| | |||||||||||    
T  29126134 tcggtttaaattctccatttcgttggttttgtccgaaccactta 29126091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 41092125 - 41092163
Alignment:
Q  161 gtttggactttcggtttcattggttttattcgaaccact 199  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  41092125 gttttgactttcggtttcattggttttgttcgaaccact 41092163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 30126223 - 30126283
Alignment:
Q  118 aaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttc 178  Q
    |||| |||||||||||||| | |||||||||  ||||| ||||||||||| ||||| ||||    
T  30126223 aaacagaaccaaacaaggtcgaatattttttttgtttgattcggtttggagtttcgatttc 30126283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 580 - 767
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| |||||||||||||||||||| |||||| |||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||    
T  580 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaatcaaactagatcggtttcaattggttcggatcggtttcaaacc 679  T
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 210  Q
    |||||||||||| |  ||||||||||| |||||||  |||||||||| |||||||| |||||||  |  |||||||||| ||||||||    
T  680 gaaccaaacaagatcagatattttttcagtttggtctggtttggactatcggtttcgttggtttagtctgaaccacttacacccctat 767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 39695268 - 39695086
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    ||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||| ||| ||||||||| |||| ||| |||||||||||    
T  39695268 atcatcagattggttcatcggtttcacggacctcgaaatgaaaaaccatgaaccaaaccaaactatatcagtttcgattggttcagatcggtttcaaacc 39695169  T
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 210  Q
    |||||||||||||| |||||| | ||||||||     || |||||||||||||||| ||||||||   ||||||||||| ||||||||    
T  39695168 gaaccaaacaaggtcggatatctcttcggttt-----gggttggactttcggtttcgttggttttgcccgaaccacttacacccctat 39695086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 39 - 209
Target Start/End: Original strand, 7352385 - 7352555
Alignment:
Q  39 atcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttg 138  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| || || |    
T  7352385 atcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagaccggtttcgattggttcggatcggtttcaaaccaaaccaaataaagtcg 7352484  T
Q  139 gatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    ||||||||||||||| |||| | ||||||||||||||||| |||||||| |  |||||| ||| |||||||    
T  7352485 gatattttttcggttcggtttgatttggactttcggtttcgttggttttgtctgaaccaattacaccccta 7352555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 46993434 - 46993309
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| |||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||  |||||||   |||||||||    
T  46993434 atcatcggattggttaatcggtttcacggatctcgaaatgaaaaaccatgaaccaaaccaaactagatcagtttcgattgattcggatcaatttcaaacc 46993335  T
Q  123 gaaccaaacaaggttggatatttttt 148  Q
    || ||||||||||| | |||||||||    
T  46993334 gacccaaacaaggtcgaatatttttt 46993309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 7995124 - 7994998
Alignment:
Q  30 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 129  Q
    ||||||||||||||||||||  ||||| |||| ||||| ||||||||||||||||||||||||||||| ||| |||||||| | |||  |||||||||||    
T  7995124 gattggttcatcggtttcacgaatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcggatcgattttcaaccgaaccaa 7995025  T
Q  130 acaaggttggatattttttcggtttgg 156  Q
    |||||||   |||||||||| ||||||    
T  7995024 acaaggtcaaatattttttcagtttgg 7994998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 209
Target Start/End: Complemental strand, 48070772 - 48070614
Alignment:
Q  51 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 150  Q
    |||||| |||| ||||| |  ||||| || |||||||||||||||| | ||||||||| | |||||  |||| || |||||||||| ||||||||||| |    
T  48070772 gatctcaaaattaaaaaccgagaaccgaatcaaactagatcggtttaggttagttcggttcggttttgaaccaaatcaaacaaggtcggatatttttttg 48070673  T
Q  151 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    |||| ||||||||| || ||||||||| || | |||| | ||||||||||| |||||||    
T  48070672 gtttagttcggtttagattttcggtttgatcgattttgtccgaaccacttacaccccta 48070614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 209
Target Start/End: Original strand, 3996991 - 3997128
Alignment:
Q  72 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 171  Q
    ||||| |||||||| || | ||||| |||| ||| || | |||||  |||| |||||||||| || ||||  || ||||||||||| |||||||||||||    
T  3996991 gaaccgaaccaaacaaggttggtttagattggttaggttcggttttgaaccaaaccaaacaaagtcggattcttcttcggtttggtacggtttggacttt 3997090  T
Q  172 cggtttcattggttttattcgaaccacttaaaccccta 209  Q
    |||||||||||||||| | ||||||||||| |||||||    
T  3997091 cggtttcattggttttgtccgaaccacttacaccccta 3997128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 11727328 - 11727449
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| |||||||| |||||||| || ||||||||||| ||||| || |||||||||||||||||||||||||           |||||||||||||||    
T  11727328 atcatcggattggtttatcggttttacggatctcgaaatgaaaaaccacgaaccaaaccaaactagatcggttt----------tgattggtttcaaacc 11727417  T
Q  123 gaaccaaacaaggttggatattttttcggttt 154  Q
    ||||||||||||||   |||||||||||||||    
T  11727418 gaaccaaacaaggtcatatattttttcggttt 11727449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 46265353 - 46265457
Alignment:
Q  73 aaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttc 172  Q
    ||||||||||||| |||||||||| ||||  ||||| | |||||  |||||||||  ||||||| |||||  |||| |||||||||||||||||||||||    
T  46265353 aaccaaaccaaacaagatcggtttagattgattcggttcggttttgaaccgaacccgacaaggtcggatacatttttggtttggttcggtttggactttc 46265452  T
Q  173 ggttt 177  Q
    |||||    
T  46265453 ggttt 46265457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 177
Target Start/End: Complemental strand, 2923125 - 2922986
Alignment:
Q  37 tcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggt 136  Q
    |||||||||||   |||||| |||| |||||||| ||||| || ||||| || ||||| | |||| |||||| | |||||  |||||||||| |||||||    
T  2923125 tcatcggtttcttggatctcaaaatgaaaaatcaagaaccgaatcaaacaaggtcggtgtagattggttcggttcggttttgaaccgaaccatacaaggt 2923026  T
Q  137 tggatattttttcggtttggttcggtttggactttcggttt 177  Q
    || |||  |||| |||||||||| |||||||||||||||||    
T  2923025 tgaatacatttttggtttggttc-gtttggactttcggttt 2922986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 12013026 - 12013109
Alignment:
Q  118 aaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 201  Q
    ||||||||||||| ||||| ||||| |||||||||| |||||  |||  | ||||| |||||| |||||||||| |||||||||    
T  12013026 aaaccgaaccaaataaggtcggatactttttcggttcggttcaatttaaattttcgatttcatcggttttattcaaaccactta 12013109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 209
Target Start/End: Original strand, 27226938 - 27227089
Alignment:
Q  58 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 157  Q
    |||| ||||| || ||||| |||||||| || ||||||| |||| |||||| | || ||  | || ||||| ||||| | |||||  ||||  ||||| |    
T  27226938 aaattaaaaaccaagaaccgaaccaaacaaggtcggtttagattggttcggttcggctttgatccaaaccagacaagatgggataccttttaagtttgtt 27227037  T
Q  158 tcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    |||||||||||||| | |||||| |||||| | ||||| ||||| |||||||    
T  27227038 tcggtttggacttttgatttcatcggttttgtccgaacaacttacaccccta 27227089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 12471855 - 12471911
Alignment:
Q  145 ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 201  Q
    ||||| |||| |||||||||||| ||||  |||||| |||||||| |||||||||||    
T  12471855 ttttcagttttgttcggtttggattttcaatttcatcggttttatccgaaccactta 12471911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 35738239 - 35738291
Alignment:
Q  145 ttttcggtttggttcggtttggactttcggtttcattggttttattcgaacca 197  Q
    ||||||||| |||||||||||||||||| ||||| | | |||||| |||||||    
T  35738239 ttttcggttcggttcggtttggactttccgtttcgtcgattttatccgaacca 35738291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 31111599 - 31111413
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||| |||||||||| ||||||||||  |||||| |||| ||||| ||||||||||||||||||||||||||||| ||| |||| |||  ||||||||||    
T  31111599 atcaccagattggtttatcggtttcaaggatctcaaaatgaaaaaccatgaaccaaaccaaactagatcggtttcaattggttcagatcagtttcaaacc 31111500  T
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    |||||||||||||| ||||||||||||||||||||||  |||||| |||||||||| ||| |||| |   ||||||||| |||||||    
T  31111499 gaaccaaacaaggtcggatattttttcggtttggttcaatttggattttcggtttcgttgattttgtctaaaccacttacaccccta 31111413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 13852269 - 13852453
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||| |||||||||||||||||||||| |||||| |||| |||||  ||||||||||||||||||||||||||| |||| ||| |||| |||||||||||    
T  13852269 atcaacagattggttcatcggtttcacggatctcaaaatgaaaaactatgaaccaaaccaaactagatcggttttgattggtttggatcggtttcaaacc 13852368  T
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 207  Q
    ||| ||||||| ||  |||||||||| | |||| |||  |||||||||||| |||| |||||||| | ||||| ||||| |||||    
T  13852369 gaatcaaacaaagtcagatatttttttgatttgattcaatttggactttcgatttcgttggttttgtccgaactacttacacccc 13852453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 4638340 - 4638207
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| |||||||||||||||||||| |||||| |||| ||||| ||||||||||||||||||| ||| || | |||| |||||||| | |||||||||    
T  4638340 atcatcggattggttcatcggtttcacggatctcaaaatgaaaaaccatgaaccaaaccaaactaaatcagtattgattggttcggatcgatttcaaacc 4638241  T
Q  123 gaaccaaacaaggttggatattttttcggtttgg 156  Q
    ||||| |||||||| |||||||||||||||||||    
T  4638240 gaaccgaacaaggtcggatattttttcggtttgg 4638207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 209
Target Start/End: Original strand, 29109190 - 29109348
Alignment:
Q  51 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 150  Q
    |||||| |||| ||||| |  ||||||||||||||||||| ||||| | ||  ||||| | |||||  ||| |||||||||||||| ||||| ||||||     
T  29109190 gatctcaaaattaaaaaccgagaaccaaaccaaactagattggtttaggttgcttcggttcggttttgaactgaaccaaacaaggtcggataatttttca 29109289  T
Q  151 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    ||||||||||||||||| |||| |||||||  ||||| | ||||||||||| |||||||    
T  29109290 gtttggttcggtttggattttcagtttcatcagttttgtccgaaccacttacaccccta 29109348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 197
Target Start/End: Original strand, 3919882 - 3920029
Alignment:
Q  50 agatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttc 149  Q
    ||||||| |||| |||||| | ||||||||||||||||||||||||| | || |||||| | |||||  |||| |||||||||| || | ||  ||||||    
T  3919882 agatctcaaaattaaaaattaagaaccaaaccaaactagatcggtttagtttggttcggttcggttttgaaccaaaccaaacaaagtcgaatgctttttc 3919981  T
Q  150 ggtttggttcggtttggactttcggtttcattggttttattcgaacca 197  Q
    |||||| ||| ||||| | ||| ||||||||||||||| ||| |||||    
T  3919982 ggtttgattcagtttgaattttaggtttcattggttttgttccaacca 3920029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 12893980 - 12894099
Alignment:
Q  90 tcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttat 189  Q
    ||||||| |||| |||||| || ||||  |||||||||||||||||| |||||  |||| |||||||||| ||||||||||| | |||| |||||||| |    
T  12893980 tcggtttagattggttcggttttgttttgaaccgaaccaaacaaggtcggatacatttttggtttggttcagtttggacttttgatttcgttggttttgt 12894079  T
Q  190 tcgaaccacttaaaccccta 209  Q
      |||||||| | |||||||    
T  12894080 ctgaaccactcacaccccta 12894099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 36009345 - 36009278
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagat 90  Q
    |||||| ||||| |||||||||||||  ||||||||||| ||||| ||||||||||||||||||||||    
T  36009345 atcatcggattgattcatcggtttcatggatctcgaaatgaaaaaccatgaaccaaaccaaactagat 36009278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 38607150 - 38607020
Alignment:
Q  25 catcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccga 124  Q
    ||||| || ||||||||||||| |  |||||| |||| ||||| || ||||| |||||||| || || |||| |||| |||||| | |||||  || |||    
T  38607150 catcaaatcggttcatcggttttatggatctcaaaatgaaaaaccaagaaccgaaccaaacaaggtcagtttagattggttcggttcggttttgaatcga 38607051  T
Q  125 accaaacaaggttggatattttttcggtttgg 156  Q
    | |||||||||| |||||| ||||||||||||    
T  38607050 a-caaacaaggtcggatatattttcggtttgg 38607020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 37630461 - 37630375
Alignment:
Q  78 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggttt 164  Q
    |||||||||||||| |||| | || ||| |||| | |||  |||| |||||| ||||||| |||| |||||||||||||||||||||    
T  37630461 aaccaaactagatcagtttaggttggtttggatcgattttgaaccaaaccaagcaaggttcgatactttttcggtttggttcggttt 37630375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 5526353 - 5526225
Alignment:
Q  72 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 171  Q
    ||||| ||||||||||||||||||| | || |||||  |  ||||  |||||||| ||||||||| |||||  ||||||||||||||   |||||| |||    
T  5526353 gaaccgaaccaaactagatcggtttaggttggttcgt-tcagttttgaaccgaacaaaacaaggtcggatacgttttcggtttggtttaatttggatttt 5526255  T
Q  172 cggtttcattggttttattcgaaccactta 201  Q
    || |||| |||||||| | || ||||||||    
T  5526254 cgatttctttggttttgtccggaccactta 5526225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 30906942 - 30907029
Alignment:
Q  123 gaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 210  Q
    |||||||||||||| | | | ||||| |||||||||| || |||| |||||||||||| | |||| | | ||||||||| ||||||||    
T  30906942 gaaccaaacaaggtcgaaaacttttttggtttggttcagtctggattttcggtttcatcgattttgtccaaaccacttacacccctat 30907029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 209
Target Start/End: Complemental strand, 46655694 - 46655514
Alignment:
Q  30 gattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaa 129  Q
    |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||    
T  46655694 gattggttcatcggtttcacggatctcgaaatgaaaaagcatgaaccaaaccaaactagattggttttgattggttcggatcggtttcaaaccgaaccaa 46655595  T
Q  130 acaaggttggatatt-ttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
      ||||| ||||||| |||| ||||||||| |||| ||| ||||| |||| |||| ||||| ||||||||||  |||||||    
T  46655594 gtaaggtcggatattttttttggtttggtttggttcggattttcgatttcgttggatttatccgaaccacttgcaccccta 46655514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 206
Target Start/End: Complemental strand, 44471168 - 44471020
Alignment:
Q  58 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 157  Q
    |||| ||||| || ||||| ||||||||||||||||||| |||| ||| || | |||||  |||||||| ||||||||| |||||  |||||||||||||    
T  44471168 aaattaaaaaccaagaaccgaaccaaactagatcggtttagattggtttggttcggttttgaaccgaactaaacaaggtcggatacattttcggtttggt 44471069  T
Q  158 tcggtttggactttcggtttcattggttttattcgaaccacttaaaccc 206  Q
    |||||||||| ||||| |||||| |||||| | ||||||||||| ||||    
T  44471068 tcggtttggattttcgatttcatcggttttgtccgaaccacttacaccc 44471020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 210
Target Start/End: Original strand, 11503337 - 11503513
Alignment:
Q  34 ggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa 133  Q
    |||| |||||||||   |||||| |||| |||||||  |||||||||||||  ||||||||||||||| |||||| | |||||  ||||  |||| ||||    
T  11503337 ggtttatcggtttcttggatctcaaaatgaaaaatcgagaaccaaaccaaataagatcggtttcgattggttcggttcggttttgaaccttaccagacaa 11503436  T
Q  134 ggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 210  Q
    ||| |||||  |||| ||||||||||||||||||||||| ||||||| ||||||||   |||| |||| ||||||||    
T  11503437 ggtcggatacatttttggtttggttcggtttggactttcagtttcatcggttttatcttaaccgcttacacccctat 11503513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 210
Target Start/End: Original strand, 30554574 - 30554726
Alignment:
Q  58 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggt 157  Q
    |||| |||||||  ||||| ||||||||||||||||||| |||| |||||| | | |||  |||||||| ||||||||| ||||| ||||||||||| |     
T  30554574 aaattaaaaatcgagaaccgaaccaaactagatcggtttagattggttcggttcgattttgaaccgaactaaacaaggtcggatactttttcggtttagc 30554673  T
Q  158 tcggtttggactttcggtttcattggttttattcgaaccacttaaacccctat 210  Q
    ||| |||||| |||||||||||| | |||| ||||||||| ||| ||||||||    
T  30554674 tcgatttggattttcggtttcatcgattttgttcgaaccatttacacccctat 30554726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 46892701 - 46892612
Alignment:
Q  112 ggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 201  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| | |||  ||||||| ||||||   |||||||||||    
T  46892701 ggttttaaaccgaaccaaacaaggtcggatattttttcggtttggttcggtttgaattttttgtttcatcggttttgcccgaaccactta 46892612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 27524154 - 27524053
Alignment:
Q  72 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 171  Q
    ||||| |||||||| || ||| ||| |||| ||| || |||||||  | |||||||||||||||| | |||  ||||||||||||||  |||||||||||    
T  27524154 gaaccgaaccaaacaaggtcgatttagattggtttggtttggttttgatccgaaccaaacaaggtcgaataccttttcggtttggtttagtttggacttt 27524055  T
Q  172 cg 173  Q
    ||    
T  27524054 cg 27524053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 779533 - 779629
Alignment:
Q  58 aaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggttt 154  Q
    |||| ||||| || ||||| ||||||||||||| ||||| | || |||||  |  ||||  |||||||| ||||||||||||||| |||||||||||    
T  779533 aaattaaaaaccaagaaccgaaccaaactagattggtttaggttggttcgattctgttttgaaccgaactaaacaaggttggatactttttcggttt 779629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 23307117 - 23307205
Alignment:
Q  113 gtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccactta 201  Q
    |||| |||||||||||  |||||||| ||| | |||| |||||||| ||||| |||||||  |||||| | |||| |||||||||||||    
T  23307117 gttttaaaccgaaccattcaaggttgaatactatttcagtttggtttggtttagactttcaatttcatcgattttgttcgaaccactta 23307205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 12937849 - 12937912
Alignment:
Q  144 tttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccc 207  Q
    ||||||| ||| |||||||||||| |||||||||||| | |||||| |||| |||||| |||||    
T  12937849 tttttcgatttagttcggtttggattttcggtttcatcgattttatccgaatcacttacacccc 12937912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 209
Target Start/End: Complemental strand, 26757751 - 26757593
Alignment:
Q  51 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 150  Q
    |||||| |||| ||||  || ||||| |||||| ||| |||| ||| | || |||||| |  |||| ||||  |||||||||| || | ||| |||||||    
T  26757751 gatctcaaaattaaaatccaagaaccgaaccaatctatatcgatttaggttggttcggttcagttttaaactaaaccaaacaacgtcgaatactttttcg 26757652  T
Q  151 gtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
     ||| ||| | |||||| ||||| ||||||||||||| | | ||||||||| |||||||    
T  26757651 attttgtttgatttggattttcgatttcattggttttgtccaaaccacttacaccccta 26757593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 44285691 - 44285605
Alignment:
Q  78 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggttt 164  Q
    |||||||||| |||| ||| | || |||||| | |||||  ||||||||||||||||||   |||||||||||||||  ||||||||    
T  44285691 aaccaaactaaatcgatttaggttggttcggttcggttttgaaccgaaccaaacaaggtcatatattttttcggtttaattcggttt 44285605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 23659501 - 23659401
Alignment:
Q  109 attggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaacccct 208  Q
    ||||||||  |||||||||||||||  || |||| ||||||| ||| |  ||||||| | |||||||||||| | |||| |  |||||||||| ||||||    
T  23659501 attggttttgaaccgaaccaaacaaaattagatactttttcgatttagaacggtttgaattttcggtttcatcgattttgtctgaaccacttatacccct 23659402  T
Q  209 a 209  Q
    |    
T  23659401 a 23659401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 1844 - 1970
Alignment:
Q  23 atcatcagattggttcatcggtttcacagatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaacc 122  Q
    |||||| ||||||||||||||||||||  |||||||||| ||||| |||||||||||||||| |||||| |||| |||| |||| ||| | |||||||||    
T  1844 atcatcggattggttcatcggtttcacgaatctcgaaattaaaaaccatgaaccaaaccaaagtagatcagttttgattggttccgatcgatttcaaacc 1943  T
Q  123 gaaccaaacaaggttggatattttttc 149  Q
    |||||||||||||| ||||||||||||    
T  1944 gaaccaaacaaggtcggatattttttc 1970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 7176529 - 7176662
Alignment:
Q  73 aaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttc 172  Q
    |||| ||||||||||||||||||| | || |||||| | | |||  |||| ||||||||||||||||||| |||||||| ||||||||||| |   ||||    
T  7176529 aaccgaaccaaactagatcggtttaggttggttcggttcgattttgaaccaaaccaaacaaggttggatactttttcgggttggttcggttagagttttc 7176628  T
Q  173 ggtttcattggttttattcgaaccacttaaaccc 206  Q
    |||||||| |||||| | |||| |||||| ||||    
T  7176629 ggtttcatcggttttgtccgaaacacttacaccc 7176662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 23301548 - 23301441
Alignment:
Q  72 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcggtttggttcggtttggacttt 171  Q
    ||||| |||||||||||||| |||| | || |||||| | |||||  |||||||||||||||||| | ||  |||||||||||||||| ||||| | |||    
T  23301548 gaaccgaaccaaactagatcagtttaggttggttcggttcggttttgaaccgaaccaaacaaggtcgaattatttttcggtttggttcagtttgaatttt 23301449  T
Q  172 cggtttca 179  Q
    ||||||||    
T  23301448 cggtttca 23301441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 11971546 - 11971456
Alignment:
Q  119 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    |||||||||||||||| | |||||  |||||||||| ||||||||| |  ||||| |||||||||||||||   ||||||||| |||||||    
T  11971546 aaccgaaccaaacaagatcggatacattttcggtttagttcggtttaggttttcgatttcattggttttatctaaaccacttacaccccta 11971456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 179
Target Start/End: Complemental strand, 23300583 - 23300455
Alignment:
Q  51 gatctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcg 150  Q
    |||||| |||| ||||| |  ||||| ||| |||||||||| |||| | || |||||| |  ||||  |||||||||||||||||| |  |  |||||||    
T  23300583 gatctcaaaattaaaaaccgagaaccgaactaaactagatcagtttaggttggttcggttcagttttgaaccgaaccaaacaaggtcgatttctttttcg 23300484  T
Q  151 gtttggttcggtttggactttcggtttca 179  Q
    ||||||||||||||| | |||||||||||    
T  23300483 gtttggttcggtttgaattttcggtttca 23300455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 7551423 - 7551525
Alignment:
Q  52 atctcgaaataaaaaatcatgaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttcgg 151  Q
    |||||||||| |||||||| ||||| | |||||| |   |||||| |||| |||||| |||||||  | ||||||||||||| ||||||||  |||||||    
T  7551423 atctcgaaatgaaaaatcaagaaccgacccaaacaaagccggtttagattggttcggtttggttttgatccgaaccaaacaatgttggataccttttcgg 7551522  T
Q  152 ttt 154  Q
    |||    
T  7551523 ttt 7551525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 9826868 - 9826747
Alignment:
Q  78 aaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaa-ggttggatattttttcggtttggttcggtttggactttcggtt 176  Q
    |||||||||||||||||||   || |||||| | |||||  |||||||||||| || ||| ||||| |||| ||||||||||| ||||| | ||| ||||    
T  9826868 aaccaaactagatcggtttatgttggttcggttcggttttcaaccgaaccaaataaaggtcggatactttt-cggtttggttcagtttgaatttttggtt 9826770  T
Q  177 tcattggttttattcgaaccact 199  Q
    || | |||||| | |||||||||    
T  9826769 tcttcggttttctccgaaccact 9826747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 23585990 - 23585913
Alignment:
Q  72 gaaccaaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttttc 149  Q
    |||||||||||||||| ||||||||   |||||| || | |||||  |||||||| ||||||||| ||||| ||||||    
T  23585990 gaaccaaaccaaactatatcggtttacgttagtttggttcggttttgaaccgaacaaaacaaggtcggatactttttc 23585913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 33819 - 33729
Alignment:
Q  119 aaccgaaccaaacaaggttggatattttttcggtttggttcggtttggactttcggtttcattggttttattcgaaccacttaaaccccta 209  Q
    |||| ||||| |||||||  ||||  |||||||||||||||  ||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  33819 aaccaaaccagacaaggtcagatacattttcggtttggttcaatttggactttcagtttcattggttttatccgaaccacttacaccccta 33729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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