View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0756_low_21 (Length: 251)
Name: NF0756_low_21
Description: NF0756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0756_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 17722646 - 17722878
Alignment:
| Q |
1 |
ttatgggtttattgtttaggttgttgattttgtggatttaaaagttatcctttatttgttgttagatctgggttcaattcttacctccttgattttttgt |
100 |
Q |
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| T |
17722646 |
ttatgggtttattgtttaggttgttgattttgtggatttaaaagttatcatttatttgttgttagatctgggttcaattcttacctccttgattttttgt |
17722745 |
T |
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| Q |
101 |
gctggtaaaattcatttcattggtttgagcttgtcttgttttattgcttaaattcatttcattgaataacaataaagatataaaatgcagagaaaagaac |
200 |
Q |
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| T |
17722746 |
gctggtaaaattcatttcattggtttgagcttgtcttgttttatggcttaaattcatttcattgaataacaataaatatataaaatgcagagaaaagaac |
17722845 |
T |
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| Q |
201 |
gggaacaagattttgttgctaaaattctttatg |
233 |
Q |
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| T |
17722846 |
gagaacaagattttgttgctaaaattctttatg |
17722878 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 15942098 - 15942147
Alignment:
| Q |
136 |
ttgttttattgcttaaattcatttcattgaataacaataaagatataaaa |
185 |
Q |
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| T |
15942098 |
ttgttctatttcttaaattcatttcattgaagaacaatagagataaaaaa |
15942147 |
T |
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