View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0756_low_22 (Length: 251)
Name: NF0756_low_22
Description: NF0756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0756_low_22 |
 | |
|
| [»] scaffold0117 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 42923565 - 42923375
Alignment:
| Q |
20 |
ggacatcatcattaccagcaaggcttctgtttttcacactctccgtgagggaaattaatgcgcagattttcttgtaaagttggaagcggcttcagattct |
119 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| | |
|
|
| T |
42923565 |
ggacctcatcgttaccagcaaggcttctgtttttcacactctccgtgagggaaattaatgcgcaaattttcttgtaaagttgcaagcggcttcaaatttt |
42923466 |
T |
|
| Q |
120 |
gtgttgacgattcatgcctcacctcctgatgggatgatttagctgattaaagatgatgcttgagaaactctcttcctttggggctaactag |
210 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
42923465 |
gtgttgacgattcatgcctcacctcctaatgggatgatttagctgattaaagatgatgcttgagaaactctcttccctaggggctaactag |
42923375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 1577233 - 1577058
Alignment:
| Q |
20 |
ggacatcatcattaccagcaaggcttctgtttttcacactctccgtgagggaaattaatgcgcagattttcttgtaaagttggaagcggcttcagattct |
119 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| ||||||||| |||||| |
|
|
| T |
1577233 |
ggacctcatcattaccagcaagacttttgtttttcacactctccgtgagggaaattattgcgcagatttttttgcaaagttgggagcggcttcggattct |
1577134 |
T |
|
| Q |
120 |
gtgttgacgattcatgcctcacctcctgatgggatgatttagctgattaaagatgatgcttgagaaactctcttcc |
195 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1577133 |
gtgttgaagattcatgcctcacctcctgatgggatgattcagctgattaaagatgatgcttgaggaactctcttcc |
1577058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 14116157 - 14116332
Alignment:
| Q |
20 |
ggacatcatcattaccagcaaggcttctgtttttcacactctccgtgagggaaattaatgcgcagattttcttgtaaagttggaagcggcttcagattct |
119 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| ||||||||| || ||| |
|
|
| T |
14116157 |
ggacctcatcattactagcaaggcttctgtttttcacactctccgtgagggaaattactgcgcaaattttcttgcaaagttgggagcggcttcggactct |
14116256 |
T |
|
| Q |
120 |
gtgttgacgattcatgcctcacctcctgatgggatgatttagctgattaaagatgatgcttgagaaactctcttcc |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||||||| |
|
|
| T |
14116257 |
gtgttgacgattcatgcctcacctcctgatgggatgattcaactgattaaagatgatactttggaaactctcttcc |
14116332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 31727622 - 31727440
Alignment:
| Q |
28 |
tcattaccagcaaggcttctgtttttcacactctccgtgagggaaattaatgcgcagattttcttgtaaagttggaagcggcttcagattctgtgttgac |
127 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| |||||||||||| ||| |||||||||||| |||||||| |||||||||||| |||||||||| |
|
|
| T |
31727622 |
tcattaccaacaaggcttctatttttcacactctccttgagggaaattattgcccagattttcttgcaaagttgggagcggcttcagaccctgtgttgac |
31727523 |
T |
|
| Q |
128 |
gattcatgcctcacctcctgatgggatgatttagctgattaaagatgatgcttgagaaactctcttcctttggggctaactag |
210 |
Q |
| |
|
|||||| |||||||||| |||||| |||||| | |||||||||||||||||||| | ||||||||||| | ||||||| |||| |
|
|
| T |
31727522 |
gattcacgcctcacctcttgatggaatgattcaactgattaaagatgatgcttggggaactctcttccctaggggctagctag |
31727440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 27032 - 27198
Alignment:
| Q |
28 |
tcattaccagcaaggcttctgtttttcacactctccgtgagggaaattaatgcgcagattttcttgtaaagttggaagcggcttcagattctgtgttgac |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||| ||||||||| || ||||||||||| |
|
|
| T |
27032 |
tcattaccagcaaggcttctgtttttcacactctttgtgagggaaattactgcgcagattttcttgaaatgttgggagcggcttcggactctgtgttgac |
27131 |
T |
|
| Q |
128 |
gattcatgcctcacctcctgatgggatgatttagctgattaaagatgatgcttgagaaactctcttc |
194 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | |||||||||| || |||||| |||||||||||| |
|
|
| T |
27132 |
gattcatgtctcacctcctgatgggatgattcaactgattaaagttggtgcttgggaaactctcttc |
27198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 30 - 195
Target Start/End: Original strand, 43924355 - 43924519
Alignment:
| Q |
30 |
attaccagcaaggcttctgtttttcacactctccgtgagggaaattaatgcgcagattttcttgtaaagttggaagcggcttcagattctgtgttgacga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| ||||||||| || | ||||||||||| |
|
|
| T |
43924355 |
attaccagcaaggcttctgtttttcacactcttcgtgagggaaattactgcgcagattttcttgcaaagttgggagcggcttctgactatgtgttgacga |
43924454 |
T |
|
| Q |
130 |
ttcatgcctcacctcctgatgggatgatttagctgattaaagatgatgcttgagaaactctcttcc |
195 |
Q |
| |
|
|||||| |||||||||||||||||||||| | |||| ||||||||||||||| | ||||||||||| |
|
|
| T |
43924455 |
ttcatgtctcacctcctgatgggatgattcaactgactaaagatgatgcttg-ggaactctcttcc |
43924519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 48850247 - 48850422
Alignment:
| Q |
20 |
ggacatcatcattaccagcaaggcttctgtttttcacactctccgtgagggaaattaatgcgcagattttcttgtaaagttggaagcggcttcagattct |
119 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| || |||||||| |||||||| |||||||||||| || |
|
|
| T |
48850247 |
ggacctcatcattaccagcaatgcttctgtttttcacactctccgtgagggatattactgcacattttttcttgcaaagttgggagcggcttcagacact |
48850346 |
T |
|
| Q |
120 |
gtgttgacgattcatgcctcacctcctgatgggatgatttagctgattaaagatgatgcttgagaaactctcttcc |
195 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||| | ||||||||||| |
|
|
| T |
48850347 |
gtgttgacgattcatgtctcacctcctgaagggatgattcaactgattaaagatgatgcttggggaactctcttcc |
48850422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 40924456 - 40924639
Alignment:
| Q |
27 |
atcattaccagcaaggcttctgtttttcacactctccgtgagggaaattaatgcgcagattttcttgtaaagttggaagcggcttcagattctgtgttga |
126 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||| || ||||||||||| | ||| || |||||||||||| ||||||||| |
|
|
| T |
40924456 |
atcattaccagcgaggcttctgtttttcacactctccatgagggaaattactgtgcagattttctagctaagatgagagcggcttcagactctgtgttgg |
40924555 |
T |
|
| Q |
127 |
cgattcatgcctcacctcctgatgggatgatttagctgattaaagatgatgcttgagaaactctcttcctttggggctaactag |
210 |
Q |
| |
|
|||||||| |||| ||| || ||||||| ||| |||||||||||||||||||| | |||| |||||| | ||||||| |||| |
|
|
| T |
40924556 |
cgattcatacctccccttctaatgggataattccgctgattaaagatgatgcttagggaactttcttccctaggggctagctag |
40924639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 55416527 - 55416373
Alignment:
| Q |
27 |
atcattaccagcaaggcttctgtttttcacactctccgtgagggaaattaatgcgcagattttcttgtaaagttggaagcggcttcagattctgtgttga |
126 |
Q |
| |
|
|||||||||| |||| ||||||||| || |||||||| ||||||||||| || |||||||||| | ||| ||| ||| ||||||||||||||||||| |
|
|
| T |
55416527 |
atcattaccaacaagtcttctgtttatcgcactctccaggagggaaattattgtacagattttctagctaagatgggagcagcttcagattctgtgttga |
55416428 |
T |
|
| Q |
127 |
cgattcatgcctcacctcctgatgggatgatttagctgattaaagatgatgcttg |
181 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
55416427 |
cgattcataccttcccttctgatgggatgattccattgattaaagatgatgcttg |
55416373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University