View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0756_low_28 (Length: 210)
Name: NF0756_low_28
Description: NF0756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0756_low_28 |
 | |
|
| [»] scaffold0149 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 15875458 - 15875662
Alignment:
| Q |
1 |
agatcaattcacaaaaaatatagaannnnnnnnnnnaatggaaaagtttattaagtttctgtgagcttaactcaattggtatagatgattcattgtatat |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15875458 |
agatcaattcacaaaaaatatagaatattttttttgaatggaaaagtttattaagtttttgtgagcttaactcaattggtatagatgattcattatatat |
15875557 |
T |
|
| Q |
101 |
gc---ggttatttaagaccccaacaccccaattataggaagaacacacaaaaa-atactcatatctccataatcaattttgctttgtttttgcatccata |
196 |
Q |
| |
|
|| |||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15875558 |
gcagtggttatttgaga-cccaacaccccaattataggaagaacacacaaaaatatactcatatctccataatcaattttgctttgtttttgcatccata |
15875656 |
T |
|
| Q |
197 |
tattat |
202 |
Q |
| |
|
|||||| |
|
|
| T |
15875657 |
tattat |
15875662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 16776381 - 16776521
Alignment:
| Q |
40 |
ggaaaagtttattaagtttctgtgagcttaactcaattggtatagatgattcattgtatatgc---ggtta--tttaagaccccaacaccccaattatag |
134 |
Q |
| |
|
|||||| |||||||||||| | |||| ||||||||||||||| |||||||| ||||||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
16776381 |
ggaaaaatttattaagtttatctgagtttaactcaattggtagagatgatttattgtatatgcattggttgagtttgagaccccaacaccccaattatag |
16776480 |
T |
|
| Q |
135 |
gaagaacacacaaaaaatactcatatctccataatcaatttt |
176 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| | ||||||||| |
|
|
| T |
16776481 |
gaagaaaaca-aaaaaatactcatatctccgtcatcaatttt |
16776521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 33075295 - 33075440
Alignment:
| Q |
44 |
aagtttattaagtttctgtgagcttaactcaattggtatagatgattcattgtatatgc--ggtt--atttaagaccccaacaccccaattataggaaga |
139 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| |||| ||||||||||||||| |||| |||| |||||||||| || |||||| ||||||| |
|
|
| T |
33075295 |
aagtttattaagtttctgtgagctttacttaattggtagagataattcattgtatatgcgtggttgaatttgagaccccaacccctcaattacaggaaga |
33075394 |
T |
|
| Q |
140 |
acacacaaaaaatactcatatctccataatcaattttgctttgtttttg |
188 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
33075395 |
acacacaaaaaa-actc--atctccataatcaattttgctttgtttttg |
33075440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 33070710 - 33070855
Alignment:
| Q |
44 |
aagtttattaagtttctgtgagcttaactcaattggtatagatgattcattgtatatgc--ggtt--atttaagaccccaacaccccaattataggaaga |
139 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||||| |||| ||||||||||||||| |||| |||| |||||||||| || |||||| ||||||| |
|
|
| T |
33070710 |
aagtttattaagtttctgtgagttttacttaattggtagagataattcattgtatatgcgtggttgaatttgagaccccaacccctcaattacaggaaga |
33070809 |
T |
|
| Q |
140 |
acacacaaaaaatactcatatctccataatcaattttgctttgtttttg |
188 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
33070810 |
acacacaaaaaa-actc--atctccataatcaattttgctttgtttttg |
33070855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 18886231 - 18886082
Alignment:
| Q |
40 |
ggaaaagtttattaagtttctgtgagcttaactcaattggtatagatgattcattgtatatgc--ggtt--atttaagaccccaacaccccaattatagg |
135 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| |||||||| ||| ||||||||||||||| |||| |||| |||||||||| | |||||||||| |
|
|
| T |
18886231 |
ggaaaagtttattaagtttatgtgagctttacttaattggtagcgataattcattgtatatgcgtggttgaatttgagaccccaacccttcaattatagg |
18886132 |
T |
|
| Q |
136 |
aagaacacacaaaaaatactcatatctccataatcaattttgctttgtttttg |
188 |
Q |
| |
|
||||||||| |||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
18886131 |
aagaacaca-aaaaaaaactc--atctccataatcaattttgctttgtttttg |
18886082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 22496872 - 22496722
Alignment:
| Q |
40 |
ggaaaagtttattaagtttctgtgagcttaactcaattggtatagatgattcattgtatatgc--ggtt--atttaagaccccaacaccccaattatagg |
135 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| ||||| || ||| ||||||||||||||| |||| |||| |||||||||| || |||||||||| |
|
|
| T |
22496872 |
ggaaaagtttattaagtttatgtgagctttacttaattgatagcgataattcattgtatatgcgtggttgaatttgagaccccaacccctcaattatagg |
22496773 |
T |
|
| Q |
136 |
aagaacacacaaaaaatactcatatctccataatcaattttgctttgtttttg |
188 |
Q |
| |
|
||||||||| || ||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
22496772 |
aagaacacaaaagaaaagctc--atctccataatcaattttgctttgtttttg |
22496722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 24722607 - 24722457
Alignment:
| Q |
40 |
ggaaaagtttattaagtttctgtgagcttaactcaattggtatagatgattcattgtatatgcg--gtt--atttaagaccccaacaccccaattatagg |
135 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||| ||||||| ||| |||||||||||||||| ||| |||| |||||||||| || |||||||||| |
|
|
| T |
24722607 |
ggaaaagtttat-aagtttatgtgagctttactttattggtagcgataattcattgtatatgcgtggttgaatttgagaccccaacccctcaattatagg |
24722509 |
T |
|
| Q |
136 |
aagaacacacaaaaaata-ctcatatctccataatcaattttgctttgtttttg |
188 |
Q |
| |
|
|||||| || |||||| | ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
24722508 |
aagaacccaaaaaaaaaaactcat--ctccataatcaattttgttttgtttttg |
24722457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 48083407 - 48083262
Alignment:
| Q |
44 |
aagtttattaagtttctgtgagcttaactcaattggtatagatgattcattgtatatgc--ggtt--atttaagaccccaacaccccaattataggaaga |
139 |
Q |
| |
|
|||||||||||||||| |||||||| ||| |||||||| |||| ||||||||||||||| |||| |||| |||||||||| || |||||| ||||| |
|
|
| T |
48083407 |
aagtttattaagtttccgtgagctttacttaattggtagagataattcattgtatatgcgtggttgaatttgagaccccaacccctcaattacttgaaga |
48083308 |
T |
|
| Q |
140 |
acacacaaaaaatactcatatctccataatcaattttgctttgtttttg |
188 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
48083307 |
acacacaaaaaa-actc--atctccataatcaattttgctttgtttttg |
48083262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 24831 - 24976
Alignment:
| Q |
44 |
aagtttattaagtttctgtgagcttaactcaattggtatagatgattcattgtatatgc--ggtt--atttaagaccccaacaccccaattataggaaga |
139 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| |||| ||||||||||||||| |||| | |||||| ||| || |||||||||||||| |
|
|
| T |
24831 |
aagtttattaagtttctgtgagctttacttaattggtagagataattcattgtatatgcgtggttgaaaccgagacccgaacccctcaattataggaaga |
24930 |
T |
|
| Q |
140 |
acacacaaaaaatactcatatctccataatcaattttgctttgtttttg |
188 |
Q |
| |
|
||||| ||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
24931 |
acaca-aaaaacaactc--atctccataatcaattttgctttgtttttg |
24976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University